internscience

@internscience source repo

363 skills
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Molclaw Smiles Fg Editor · internscience
SMILES Functional Group Editor

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Molclaw Compound Retrieve · internscience
Retrieve SMILES strings by compound name using PubChem with an NCI resolver fallback.

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Molclaw Docking Screening · internscience
High-level large-scale virtual screening workflow (10+ ligands) combining property filtering, QuickVina docking, EquiScore rescoring, and consensus ranking for target prioritization.

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Meta Analysis Execution · internscience
Perform meta-analysis on scientific studies to synthesize research findings and generate comprehensive reports with statistical summaries.

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Unit Conversion Nanoscale · internscience
Convert physical quantities and units at nanoscale for materials science and nanotechnology applications.

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Protocol To Executable JSON · internscience
Convert laboratory protocols to executable JSON format using Thoth-OP for automated lab equipment control.

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Sciverse Academic Retrieval · internscience
Citation-grade academic literature retrieval (search, semantic chunks, byte-range read, figure fetch) over Sciverse, an open scientific platform indexing peer-reviewed and preprint papers.

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Seismic Waveform Processing · internscience
Process seismic waveform data including reading MinISEED/SAC files, extracting metadata, and visualizing earthquake signals.

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Protocol Extraction From PDF · internscience
Extract laboratory protocols from PDF documents using Thoth-Plan to convert experimental procedures into structured text.

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Uniprot Protein Retrieval · internscience
Retrieve protein sequences and functional information from UniProt database by protein name, enabling protein analysis and bioinformatics workflows.

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Nsfc Justification Writer · internscience bundle
当用户明确要求"写/改 NSFC 立项依据""立项依据写作/重构"时使用。基于最小信息表输出价值与必要性、现状不足、科学问题/假说与项目切入点，并保持模板结构不被破坏。适用于 NSFC 及各类科研基金申请书的立项依据写作场景。

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Migrating Latex Templates · internscience bundle
当用户明确要求"迁移标书""升级模板""跨版本迁移""旧标书转新模板"时使用。智能迁移NSFC LaTeX标书到新版模板，基于五阶段工作流（分析→映射→规划→执行→验证），自动处理结构变化、内容重组、引用更新；支持AI驱动语义匹配与启发式回退，并提供 runs 输出隔离与一键迁移脚本。

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Cell Line Assay Analysis · internscience
Cell Line Assay Analysis - Analyze cell line assays: ChEMBL cell line info, assay search, activity data, and target info. Use this skill for cell biology tasks involving get cell line by id search assay search activity get target by name. Combines 4 tools from 1 SCP server(s).

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Chemical Patent Analysis · internscience
Chemical Patent & Novelty Analysis - Analyze chemical novelty: PubChem substructure CAS search, ChEMBL similarity search, compound synonyms, and literature. Use this skill for patent chemistry tasks involving get substructure cas get similarity by smiles get compound synonyms by name search literature. Combines 4 tools from 3 SCP server(s).

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Natural Product Analysis · internscience
Natural Product Analysis - Analyze natural products: name to SMILES, PubChem lookup, structural analysis, and KEGG natural product search. Use this skill for natural products chemistry tasks involving NameToSMILES search pubchem by name ChemicalStructureAnalyzer kegg find. Combines 4 tools from 4 SCP server(s).

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Smiles To Cas Conversion · internscience
Convert SMILES strings to CAS registry numbers using material informatics tools to identify chemical substances.

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Smiles Comprehensive Analysis · internscience
SMILES Comprehensive Analysis - Comprehensive SMILES analysis: validate, convert name, compute all molecular descriptors, and predict ADMET. Use this skill for cheminformatics tasks involving is valid smiles ChemicalStructureAnalyzer calculate mol basic info pred molecule admet. Combines 4 tools from 3 SCP server(s).

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Variant Clinical Significance · internscience
Query NCBI ClinVar for variant clinical pathogenicity classification (Pathogenic/Benign/VUS), review status and associated diseases.

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Variant Functional Prediction · internscience
Query FAVOR API for variant functional prediction scores (CADD, SIFT, PolyPhen, REVEL, etc.) and gene annotation.

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Measurement Error Analysis · internscience
Analyze measurement errors, uncertainties, and statistical variations in experimental data for quality control.

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Statistical Error Analysis · internscience
Statistical Error Analysis - Analyze measurement errors: absolute error, scientific notation, max value, mean square, and formatting. Use this skill for statistics tasks involving calculate absolute error convert to scientific notation calculate max value calculate mean square format scientific notation. Combines 5 tools from 1 SCP server(s).

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Protein Quality Assessment · internscience
Protein Structure Quality Assessment - Assess structure quality: basic info, geometry analysis, quality metrics, composition, and visualization. Use this skill for structural biology tasks involving calculate pdb basic info calculate pdb structural geometry calculate pdb quality metrics calculate pdb composition info visualize protein. Combines 5 tools from 1 SCP server(s).

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Protein Structure Analysis · internscience
Protein Structure Comprehensive Analysis - Comprehensive structure analysis: download PDB, extract chains, calculate geometry, quality metrics, and composition. Use this skill for structural biology tasks involving retrieve protein data by pdbcode extract pdb chains calculate pdb structural geometry calculate pdb quality metrics calculate pdb composition info. Combines 5 tools from 1 SCP server(s).

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Polymer Property Analysis · internscience
Polymer & Material Property Analysis - Analyze polymer properties: composition, symmetry, density, and lattice parameters for material design. Use this skill for polymer science tasks involving MaterialCompositionAnalyzer CalculateSymmetry CalculateDensity MofLattice. Combines 4 tools from 2 SCP server(s).

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Seawater Freezing Temperature · internscience
Calculate the freezing point temperature of seawater from absolute salinity and pressure using GSW thermodynamic equations.

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Electrical Circuit Analysis · internscience
Electrical Circuit Analysis - Analyze electrical circuit: compute capacitance, convert resistance units, calculate total charge, and duty cycle. Use this skill for electrical engineering tasks involving convert resistance kOhm to Ohm calculate geometric term calculate absolute error. Combines 3 tools from 3 SCP server(s).

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Protein Function Annotation · internscience
Protein Function Annotation Pipeline - Annotate protein function: UniProt metadata, InterPro domains, functional prediction, and GO enrichment. Use this skill for proteomics tasks involving query uniprot query interpro predict protein function get functional enrichment. Combines 4 tools from 2 SCP server(s).

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Protein Interaction Network · internscience
Protein Interaction Network Analysis - Build protein interaction network: map identifiers with STRING, get PPI network, compute enrichment, and link to KEGG pathways. Use this skill for systems biology tasks involving mapping identifiers get string network interaction get ppi enrichment kegg link. Combines 4 tools from 2 SCP server(s).

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Protein Property Comparison · internscience
Cross-Species Protein Comparison - Compare proteins across species: get orthologs from NCBI, compute properties for each, and compare similarity. Use this skill for comparative biology tasks involving get gene orthologs calculate protein sequence properties calculate smiles similarity get homology id. Combines 4 tools from 3 SCP server(s).

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Compound Database Crossref · internscience
Cross-Database Compound Lookup - Cross-reference compound across databases: PubChem, ChEMBL, KEGG, and CAS number lookup. Use this skill for chemical information tasks involving get compound by name get molecule by name kegg find CASToPrice. Combines 4 tools from 4 SCP server(s).

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Functional Group Profiling · internscience
Functional Group Profiling - Profile functional groups: radical assignment, H-bond analysis, aromaticity, and abbreviation condensation. Use this skill for organic chemistry tasks involving AssignRadicals GetHBANum AromaticityAnalyzer CondenseAbbreviationSubstanceGroups. Combines 4 tools from 2 SCP server(s).

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Experimental Data Processing · internscience
Experimental Data Processing - Process experimental data: absolute error, mean square, max value, scientific notation formatting. Use this skill for experimental physics tasks involving calculate absolute error calculate mean square calculate max value format scientific notation convert to scientific notation. Combines 5 tools from 1 SCP server(s).

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Geometric Volume Calculation · internscience
Calculate volumes of geometric shapes for engineering design and mathematical analysis.

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Alphafold Structure Pipeline · internscience
AlphaFold Structure Analysis Pipeline - AlphaFold pipeline: download predicted structure, predict pockets, extract sequence, and compute properties. Use this skill for computational biology tasks involving download alphafold structure run fpocket extract pdb sequence calculate pdb basic info. Combines 4 tools from 3 SCP server(s).

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Interproscan Domain Analysis · internscience
Analyze protein sequences using InterProScan to identify functional domains, protein families, and Gene Ontology (GO) annotations.

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Lab Protocol From Literature · internscience
Lab Protocol from Literature - Extract and generate lab protocol: search PubMed, extract protocol from paper, and generate executable protocol. Use this skill for lab science tasks involving pubmed search extract protocol from pdf protocol generation generate executable json. Combines 4 tools from 2 SCP server(s).

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Structural Homology Modeling · internscience
Structural Homology & Evolution Analysis - Analyze protein evolution: get gene tree from Ensembl, find homologs, compare sequences, and predict structure. Use this skill for evolutionary biology tasks involving get homology symbol get genetree member symbol calculate protein sequence properties pred protein structure esmfold. Combines 4 tools from 3 SCP server(s).

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Nsfc Research Content Writer · internscience bundle
当用户明确要求"写/改研究内容""研究内容+创新+年度计划编排"时使用。为 NSFC 正文"（二）研究内容"写作/重构，并同步编排"特色与创新"和"三年年度研究计划"，输出可直接落到 LaTeX 模板的三个 extraTex 文件。

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Systematic Literature Review · internscience bundle
当用户明确要求"做系统综述/文献综述/related work/相关工作/文献调研"时使用。AI 自定检索词，多源检索→去重→AI 逐篇阅读并评分（1–10分语义相关性与子主题分组）→按高分优先比例选文→自动生成"综/述"字数预算→资深领域专家自由写作（固定摘要/引言/子主题/讨论/展望/结论），保留正文字数与参考文献数硬校验，强制导出 PDF 与 Word。支持多语言翻译与智能编译（en/zh/ja/de/fr/es）。

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Chemical Property Profiling · internscience
Chemical Property Profiling - Profile chemical properties: basic info, hydrophobicity, H-bonds, charges, and molecular complexity. Use this skill for physical chemistry tasks involving calculate mol basic info calculate mol hydrophobicity calculate mol hbond calculate mol charge calculate mol complexity. Combines 5 tools from 1 SCP server(s).

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Chemical Structure Analysis · internscience
Analyze chemical structures from compound names to retrieve SMILES, molecular formulas, molecular weight, and LogP values.

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Molecular Format Conversion · internscience
Convert between molecular formats including SMILES, InChI, InChIKey, and SELFIES for cheminformatics applications.

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Molecular Similarity Search · internscience
Search for similar molecules using Tanimoto similarity with Morgan fingerprints to identify structurally related compounds.

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Comprehensive Variant Annotation · internscience
Given an rsID, query multiple databases (dbSNP, FAVOR, GWAS Catalog, ClinVar, gnomAD, PharmGKB, ClinGen) for comprehensive annotation. Use when user asks a general question about a variant without specifying which aspect.

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Optical Frequency Calculation · internscience
Calculate optical frequency and wavelength relationships for photonics and electromagnetic analysis.

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Binding Site Characterization · internscience
Binding Site Characterization - Characterize binding sites: predict pockets with fpocket and P2Rank, get binding site info from ChEMBL, and visualize. Use this skill for structural biology tasks involving run fpocket pred pocket prank get binding site by id visualize protein. Combines 4 tools from 3 SCP server(s).

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Molecular Visualization Suite · internscience
Molecular Visualization Suite - Visualize molecules: convert SMILES to formats, visualize molecule, visualize protein, visualize complex. Use this skill for chemical visualization tasks involving convert smiles to format visualize molecule visualize protein visualize complex. Combines 4 tools from 1 SCP server(s).

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Daily Paper Push Writing · internscience bundle
A research/push notification writing guide. Use this skill with high priority when users ask you to perform tasks like daily paper push.

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Substructure Activity Search · internscience
Substructure-Activity Relationship - Analyze substructure-activity: ChEMBL substructure search, activity data, PubChem compounds, and similarity. Use this skill for medicinal chemistry tasks involving get substructure by smiles search activity search pubchem by smiles calculate smiles similarity. Combines 4 tools from 3 SCP server(s).

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Atmospheric Science Calculations · internscience
Calculate atmospheric parameters including Coriolis parameter, geostrophic wind, heat index, potential temperature, and dewpoint for meteorology and climate science.

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Seawater Sound Speed Calculation · internscience
Calculate sound speed in seawater from practical salinity, temperature, and pressure using the Gibbs Seawater Oceanographic Toolbox.

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Comprehensive Protein Analysis · internscience
Comprehensive protein analysis combining InterProScan domain identification with BLAST similarity search to provide complete functional and evolutionary annotation.

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Peptide Properties Calculation · internscience
Calculate peptide sequence properties including molecular weight, isoelectric point, extinction coefficient, and chemical formula.

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Protein Properties Calculation · internscience
Calculate comprehensive protein sequence properties including isoelectric point, molecular weight, hydrophobicity, and physicochemical parameters.

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Chemical Structure Comparison · internscience
Chemical Structure Comparison - Compare chemical structures: get SMILES, analyze structures, compute similarity, and check PubChem records. Use this skill for cheminformatics tasks involving NameToSMILES ChemicalStructureAnalyzer calculate smiles similarity get compound by name. Combines 4 tools from 4 SCP server(s).

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Oceanographic Seawater Properties · internscience
Calculate seawater thermodynamic properties using TEOS-10 standard including density, salinity, sound speed, and freezing temperature for oceanography.

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Protein Classification Analysis · internscience
Protein Classification Analysis - Classify protein: ChEMBL protein classification, UniProt entry, InterPro domains, and Ensembl biotypes. Use this skill for protein science tasks involving search protein classification get uniprotkb entry by accession query interpro get info biotypes. Combines 4 tools from 4 SCP server(s).

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Protein Solubility Optimization · internscience
Protein Solubility Optimization - Optimize protein solubility: calculate properties, predict solubility, predict hydrophilicity, and suggest mutations. Use this skill for protein engineering tasks involving calculate protein sequence properties predict protein function ComputeHydrophilicity zero shot sequence prediction. Combines 4 tools from 3 SCP server(s).

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Nsfc Research Foundation Writer · internscience bundle
当用户明确要求"写/改研究基础""研究基础+工作条件+风险应对编排"时使用。为 NSFC 正文"（三）研究基础"写作/重构，并同步编排"工作条件"和"研究风险应对"，用证据链证明项目可行、资源条件对位研究内容、风险预案可执行。

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Molecular Fingerprint Analysis · internscience
Molecular Fingerprint Analysis - Fingerprint analysis: topology descriptors, structure complexity, similarity calculation, and AromaticityAnalysis. Use this skill for cheminformatics tasks involving calculate mol topology calculate mol structure complexity calculate smiles similarity AromaticityAnalyzer. Combines 4 tools from 2 SCP server(s).

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Buoyancy Acceleration Calculation · internscience
Calculate buoyancy forces and acceleration for fluid mechanics and hydrodynamics analysis.

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Molecular Descriptors Calculation · internscience
Calculate advanced molecular descriptors including shape indices, connectivity indices, and structural features for QSAR and drug discovery.

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Molecular Properties Calculation · internscience
Calculate basic molecular properties from SMILES including molecular weight, formula, atom counts, and exact mass.

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Chemical Mass Percent Calculation · internscience
Calculate mass percentages and stoichiometric ratios for chemical reactions and compound compositions.

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Material Density Volume Calculation · internscience
Calculate material density and volume from mass and geometric dimensions for materials mechanics analysis.

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Daily Paper Push Writing Wo Image · internscience bundle
A research/push notification writing guide. Use this skill with high priority when users ask you to perform tasks like daily paper push.

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Acpx · internscience
Use the ACPX CLI through DrClaw's existing exec/long_exec tools to run Codex in the current project workspace.

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Cron · internscience
Schedule and manage recurring or one-time jobs for main/project agents.

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Memory · internscience
Two-layer memory system with grep-based recall.

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Clawhub · internscience
Search and install agent skills from ClawHub, the public skill registry.

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Planner · internscience
A guideline for how to plan, split, assign tasks, and report back. Governs how the main agent triages user instructions, plans multi-agent work, splits plans into execution blocks, assigns blocks to project agents via route_to_project, tracks progress with beads, and reports outcomes.

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Local Skill Hub · internscience
Manage dormant local skill templates and attach them to project agents or equipment agents.

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Ssh Long Session · internscience
Manage long-running remote SSH jobs through tmux and inspect their output safely.

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Failure Escalation · internscience
Terminate on unrecoverable external blockers and report precise error details.

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Group Meeting Skill V1 0 0 · internscience bundle
DeepSlides - Group Meeting Slides Generator

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Fetch · internscience
Fetch metadata and links from arXiv for a given query.

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Generate Image · internscience bundle
Generate or edit images using AI models (FLUX, Gemini). Use for general-purpose image generation including photos, illustrations, artwork, visual assets, concept art, and any image that isn't a technical diagram or schematic. For flowcharts, circuits, pathways, and technical diagrams, use the scientific-schematics skill instead.

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Claude Code · internscience bundle
Claude Code integration for OpenClaw. This skill provides interfaces to: - Query Claude Code documentation from https://code.claude.com/docs - Manage subagents and coding tasks - Execute AI-assisted coding workflows - Access best practices and common workflows Use this skill when users want to: - Get help with coding tasks - Query Claude Code documentation - Manage AI-assisted development workflows - Execute complex programming tasks

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Claude Code Skill · internscience
Control Claude Code via MCP protocol. Execute commands, read/write files, search code, and use all Claude Code tools programmatically with agent team support.

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Nsfc Qc · internscience bundle
当用户明确要求"标书QC/质量控制/润色前质检/引用真伪核查/篇幅与结构检查"时使用。对 NSFC 标书进行只读质量控制：并行多线程独立检查文风生硬、引用假引/错引风险、篇幅与章节分布、逻辑清晰度等，最终输出标准化 QC 报告；中间文件默认归档到“交付目录内的隐藏工作区（.nsfc-qc/）”，并兼容 legacy `.nsfc-qc/`。

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UI UX Pro Max · internscience bundle
[Frontend] Frontend UI/UX design intelligence - activate FIRST when user requests beautiful, stunning, gorgeous, or aesthetic interfaces. 50 styles, 21 palettes, 50 font pairings, 20 charts, 8 stacks. Triggers on ui design, ux design, design system, color palette, typography, glassmorphism, claymorphism, neumorphism, bento grid, font pairing, ui-ux-pro-max, stunning interface, beautiful ui.

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DOCX · internscience bundle
Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when extracting or reorganizing content from .docx files, inserting or replacing images in documents, performing find-and-replace in Word files, working with tracked changes or comments, or converting content into a polished Word document. If the user asks for a 'report', 'memo', 'letter', 'template', or similar deliverable as a Word or .docx file, use this skill. Do NOT use for PDFs, spreadsheets, Google Docs, or general coding tasks unrelated to document generation.

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Ssh Essentials · internscience bundle
Essential SSH commands for secure remote access, key management, tunneling, and file transfers.

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Scientific Writing · internscience bundle
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.

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Nsfc Code · internscience bundle
根据 NSFC 标书正文内容，结合申请代码推荐库，为你给出 5 组申请代码1/2（主/次）推荐与理由；输出到 NSFC-CODE-vYYYYMMDDHHmm.md（只读，不修改标书）

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Drugsda Admet · internscience
Predict the ADMET (absorption, distribution, metabolism, excretion, and toxicity) properties of the input molecules.

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Drugsda Dleps · internscience
Calculate disease reversal scores for the provided molecules relative to a specific disease.

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Today Paper Summary · internscience bundle
Retrieves papers the user browsed today, downloads PDFs, generates summaries, and returns an enriched list. Use when the user asks what papers they read today, wants a summary of today's papers, or asks about their recent reading activity.

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Drugsda P2rank · internscience
P2Rank Pocket Location

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Drugsda Prosst · internscience
Given a protein sequence and its structure, employ ProSST model to predict mutation effects and obtain the top-k mutated sequences.

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Virus Genomics · internscience
Virus Genomics Analysis - Analyze virus genomics: NCBI virus dataset, annotation, taxonomy, and literature search. Use this skill for virology tasks involving get virus dataset report get virus annotation report get taxonomy search literature. Combines 4 tools from 2 SCP server(s).

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Nsfc Budget · internscience bundle
当用户明确要求“写/生成 NSFC 预算说明书”“写预算说明”“生成 budget.tex / budget.pdf”“写国自然预算 justification”时使用。基于用户标书正文或补充材料，输出一份可提交的预算说明书 LaTeX 项目并渲染 `budget.pdf`。若用户未指定工作目录，必须暂停并先要求其指定。⚠️ 不适用：用户只是想了解预算原则；用户仅要预算表数字而不写说明书；或用户是 2026 青年 A/B/C 默认包干制且无需预算说明书的场景。

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Scientific Schematics · internscience bundle
Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review. Only regenerates if quality is below threshold for your document type. Specialized in neural network architectures, system diagrams, flowcharts, biological pathways, and complex scientific visualizations.

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Drugsda Esmfold · internscience
Use ESMFold model to predict 3D structure of the input protein sequence.

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Biomedical Web Search · internscience
Search biomedical literature and web content using Tavily search engine for research and clinical information.

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Pubmed Article Search · internscience
Search PubMed database for scientific articles and publications to retrieve biomedical literature.

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Nsfc Roadmap · internscience bundle
当用户明确要求"生成 NSFC 技术路线图/技术路线图绘制/roadmap/flowchart"或需要把标书研究内容转成"可打印、A4 可读"的技术路线图时使用。默认输出可编辑源文件（`.drawio`）与可嵌入文档的渲染结果（`.svg`/`.png`/`.pdf`）；当用户主动提及 Nano Banana/Gemini 图片模型时，可切换为 PNG-only 模式。⚠️ 不适用：用户只是想修改某张已有图片的格式/尺寸（应使用图片处理技能）、只是想润色技术路线文字描述（应直接改写正文）。

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Epigenetics Drug · internscience
Epigenetics & Drug Response - Link epigenetics to drug response: gene regulation, variant effects, drug interactions, and expression. Use this skill for epigenetic pharmacology tasks involving get overlap region get vep hgvs get drug interactions by drug name get gene expression across cancers. Combines 4 tools from 3 SCP server(s).

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Go Term Analysis · internscience
Gene Ontology Analysis - Analyze GO terms: ChEMBL GO slim, STRING functional enrichment, STRING annotation, and Ensembl ontology. Use this skill for functional genomics tasks involving get go slim by id get functional enrichment get functional annotation get ontology name. Combines 4 tools from 3 SCP server(s).

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Kegg Gene Search · internscience
Search KEGG database for gene information to retrieve pathway associations, functional annotations, and disease links.

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363 published skills · page 2 of 4