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Lord1Egypt

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• 5.4k skills
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• 2 repo stars
• 2 weeks ago last updated

1. ▌
   Beautifulsoup Scraping · lord1egypt

   Parsing HTML web structures, searching tags, and extracting text using BeautifulSoup4.
   2 repo stars
2. ▌
   Crispr Screen Analysis · lord1egypt

   CRISPR genetic screen analysis using MAGeCK, CRISPRclean, and crispy. Use for pooled CRISPR knockout/activation screens, sgRNA count normalization, gene essentiality scoring, hit calling, pathway enrichment, and QC of CRISPR screen data. Supports both positive and negative selection screens.
   2 repo stars
3. ▌
   Data Tool Use Concepts · lord1egypt

   Conceptual foundations of tool use with the Claude API including tool definitions, tool choice, and best practices
   2 repo stars
4. ▌
   Labarchive Integration · lord1egypt bundle

   Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
   2 repo stars
5. ▌
   Markdown Documentation · lord1egypt

   Structuring technical markdown docs, wikis, and building clean developer layout grids.
   2 repo stars
6. ▌
   Python Requests Client · lord1egypt

   Performing synchronous HTTP requests, managing sessions, passing headers, and query parameters using Requests.
   2 repo stars
7. ▌
   Skill Computer Use MCP · lord1egypt

   Instructions for using computer-use MCP tools including tool selection tiers, app access tiers, link safety, and financial action restrictions
   2 repo stars
8. ▌
   Tool Description Skill · lord1egypt

   Tool description for executing skills in the main conversation
   2 repo stars
9. ▌
   Get Available Resources · lord1egypt bundle

   This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file with resource information and strategic recommendations that inform computational approach decisions such as whether to use parallel processing (joblib, multiprocessing), out-of-core computing (Dask, Zarr), GPU acceleration (PyTorch, JAX), or memory-efficient strategies. Use this skill before running analyses, training models, processing large datasets, or any task where resource constraints matter.
   2 repo stars
10. ▌
    Iso 13485 Certification · lord1egypt bundle

    Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing documentation, (2) creating Quality Manuals, (3) developing required procedures and work instructions, (4) preparing Medical Device Files, (5) understanding ISO 13485 requirements, or (6) identifying missing documentation for medical device certification. Also use when users mention medical device regulations, QMS certification, FDA QMSR, EU MDR, or need help with quality system documentation.
    2 repo stars
11. ▌
    Market Research Reports · lord1egypt bundle

    Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, deep integration with research-lookup for data gathering, and multi-framework strategic analysis including Porter Five Forces, PESTLE, SWOT, TAM/SAM/SOM, and BCG Matrix.
    2 repo stars
12. ▌
    Ngs Pipeline Management · lord1egypt

    Next-generation sequencing pipeline management with Snakemake and Nextflow. Use for building, running, and debugging reproducible NGS workflows for RNA-seq, WGS, ChIP-seq, ATAC-seq, and amplicon sequencing. Covers pipeline design patterns, HPC/cloud execution, containerization, and workflow optimization.
    2 repo stars
13. ▌
    Protocolsio Integration · lord1egypt bundle

    Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
    2 repo stars
14. ▌
    Audio Intelligence · lord1egypt

    Native audio understanding, transcription, speech tone analysis, sound classification, and multi-speaker transcription.
    2 repo stars
15. ▌
    Data Anthropic CLI · lord1egypt

    Reference documentation for the ant CLI covering installation, authentication, command structure, input and output shaping, managed agents workflows, and scripting patterns
    2 repo stars
16. ▌
    Git Workflow Utils · lord1egypt

    Advanced git operations including branching, commits, merge conflicts, tag creation, and history manipulation.
    2 repo stars
17. ▌
    Image Optimization · lord1egypt

    Resizing, compressing formats, and applying image filters using Pillow.
    2 repo stars
18. ▌
    Logging Monitoring · lord1egypt

    Configuring Python logging library, formatting streams, and managing rotating logs.
    2 repo stars
19. ▌
    Playwright Browser · lord1egypt

    Automated headless web browser testing, page interactions, screenshot capture, and web scraping.
    2 repo stars
20. ▌
    Prometheus Metrics · lord1egypt

    Instrumenting system diagnostics, counting requests, and exporting metrics to Prometheus monitoring systems.
    2 repo stars
21. ▌
    Scholar Evaluation · lord1egypt bundle

    Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and actionable feedback.
    2 repo stars
22. ▌
    Scientific Writing · lord1egypt bundle

    Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.
    2 repo stars
23. ▌
    Skill Verify Skill · lord1egypt

    Skill for opinionated verification workflow for validating code changes.
    2 repo stars
24. ▌
    Websockets Network · lord1egypt

    Asynchronous bi-directional WebSocket client and server configuration in Python.
    2 repo stars
25. ▌
    Citation Management · lord1egypt bundle

    Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.
    2 repo stars
26. ▌
    Proteomics Analysis · lord1egypt

    Mass spectrometry-based proteomics data analysis with pyteomics, spectrum_utils, and MaxQuant/DIA-NN output processing. Use for peptide identification, protein quantification (LFQ, TMT, SILAC), differential expression, PTM analysis, and proteomics data visualization. Covers both DDA and DIA proteomics workflows.
    2 repo stars
27. ▌
    Pydantic Validation · lord1egypt

    Data validation, data parsing, configuration management, and type coercion using Pydantic.
    2 repo stars
28. ▌
    Regular Expressions · lord1egypt

    Designing, parsing, and searching string parameters using Python regular expressions.
    2 repo stars
29. ▌
    Semantic Versioning · lord1egypt

    Configuring release versions, package numbering schemes, and tracking dependency compatibilities.
    2 repo stars
30. ▌
    Stripe Payments API · lord1egypt

    Integrating Stripe payments, managing subscription billing checkout sessions, and validation signatures on webhooks.
    2 repo stars
31. ▌
    Claude System Prompt · lord1egypt

    Operational rules, safety instructions, reasoning guidelines, and behavioral patterns from the Claude 3.7 Sonnet system prompt.
    2 repo stars
32. ▌
    Dnanexus Integration · lord1egypt bundle

    DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
    2 repo stars
33. ▌
    Docker Compose Utils · lord1egypt

    Configuring, spinning up, and orchestrating multi-container local runtime environments with Docker Compose.
    2 repo stars
34. ▌
    Latchbio Integration · lord1egypt bundle

    Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
    2 repo stars
35. ▌
    Linux Bash Scripting · lord1egypt

    Writing automation scripts, file directory operations, and loop controls in Linux Bash shell.
    2 repo stars
36. ▌
    Neuropixels Analysis · lord1egypt bundle

    Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology. Use when working with neural recordings, spike sorting, extracellular electrophysiology, or when the user mentions Neuropixels, SpikeGLX, Open Ephys, Kilosort, quality metrics, or unit curation.
    2 repo stars
37. ▌
    Neuroscience Imaging · lord1egypt

    Neuroimaging data analysis with nilearn, nibabel, and fMRIPrep outputs. Use for fMRI/MRI data loading, brain atlas parcellation, functional connectivity analysis, GLM-based task fMRI, resting-state network analysis, and publication-quality brain visualizations. Covers structural MRI, task fMRI, and rs-fMRI workflows.
    2 repo stars
38. ▌
    Statistical Analysis · lord1egypt bundle

    Guided statistical analysis with test selection and reporting. Use when you need help choosing appropriate tests for your data, assumption checking, power analysis, and APA-formatted results. Best for academic research reporting, test selection guidance. For implementing specific models programmatically use statsmodels.
    2 repo stars
39. ▌
    Benchling Integration · lord1egypt bundle

    Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
    2 repo stars
40. ▌
    Climate Data Analysis · lord1egypt

    Climate and Earth system data analysis using xarray, cartopy, cfgrib, and CMIP6/ERA5 datasets. Use for loading NetCDF/GRIB climate data, computing climatologies, spatial aggregation, anomaly detection, bias correction, and publication-quality climate maps. Best for atmospheric, oceanic, and land surface data analysis.
    2 repo stars
41. ▌
    Hypothesis Generation · lord1egypt bundle

    Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to formulate testable hypotheses with predictions, propose mechanisms, and design experiments to test them. Follows scientific method framework. For open-ended ideation use scientific-brainstorming; for automated LLM-driven hypothesis testing on datasets use hypogenic.
    2 repo stars
42. ▌
    Metabolomics Analysis · lord1egypt

    Untargeted and targeted metabolomics data analysis using pyMZML, mzTab-M processing, and metabolite identification. Use for LC-MS/GC-MS feature detection, metabolite annotation, differential metabolite analysis, pathway mapping, and metabolic flux visualization. Covers XCMS-compatible workflows in Python.
    2 repo stars
43. ▌
    Opentrons Integration · lord1egypt bundle

    Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware with full access to Protocol API v2 features. Best for production Opentrons protocols, official API compatibility. For multi-vendor automation or broader equipment control use pylabrobot.
    2 repo stars
44. ▌
    Pandas Data Wrangling · lord1egypt

    Cleaning, filtering, merging, and aggregating massive tabular data structures using Pandas.
    2 repo stars
45. ▌
    Performance Profiling · lord1egypt

    Measuring CPU performance metrics and memory bottlenecks in Python code blocks.
    2 repo stars
46. ▌
    Search Grounding · lord1egypt

    Real-time Google Search grounding, live web query integration, and web source citation extraction.
    2 repo stars
47. ▌
    Security Headers · lord1egypt

    Implementing Content Security Policy (CSP), CORS, and essential security headers in web server responses.
    2 repo stars
48. ▌
    Flask Restful API · lord1egypt

    Structuring clean, resource-based HTTP REST endpoints using Flask and Flask-RESTful routing.
    2 repo stars
49. ▌
    Github Actions CI · lord1egypt

    Configuring GitHub Actions workflows for continuous integration, testing, and deployment automation.
    2 repo stars
50. ▌
    Literature Review · lord1egypt bundle

    Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).
    2 repo stars
51. ▌
    Omero Integration · lord1egypt bundle

    Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
    2 repo stars
52. ▌
    Omics Integration · lord1egypt

    Multi-omics data integration using MOFA+, DIABLO, and MixOmics for combining genomics, transcriptomics, proteomics, metabolomics, and epigenomics datasets. Use for identifying shared variation across omics layers, building integrative biomarker models, and discovering cross-modal biological patterns. Best for paired multi-omics cohort studies.
    2 repo stars
53. ▌
    PDF Parsing Utils · lord1egypt

    Extracting structured text tables and content blocks from PDF files using PyPDF or pdfplumber.
    2 repo stars
54. ▌
    Pydantic Settings · lord1egypt

    Managing environment variables, validating system configurations, and parsing .env configurations using Pydantic Settings.
    2 repo stars
55. ▌
    Scientific Slides · lord1egypt bundle

    Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design templates, timing guidance, and visual validation. Works with PowerPoint and LaTeX Beamer.
    2 repo stars
56. ▌
    Stable Baselines3 · lord1egypt bundle

    Production-ready reinforcement learning algorithms (PPO, SAC, DQN, TD3, DDPG, A2C) with scikit-learn-like API. Use for standard RL experiments, quick prototyping, and well-documented algorithm implementations. Best for single-agent RL with Gymnasium environments. For high-performance parallel training, multi-agent systems, or custom vectorized environments, use pufferlib instead.
    2 repo stars
57. ▌
    Structured Output · lord1egypt

    Structured data extraction using Pydantic schemas, strict JSON output formats, and schema validation.
    2 repo stars
58. ▌
    Treatment Plans · lord1egypt bundle

    Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management. Includes SMART goal frameworks, evidence-based interventions with minimal text citations, regulatory compliance (HIPAA), and professional formatting. Prioritizes brevity and clinical actionability.
    2 repo stars
59. ▌
    Venue Templates · lord1egypt bundle

    Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and grant proposals (NSF, NIH, DOE, DARPA). This skill should be used when preparing manuscripts for journal submission, conference papers, research posters, or grant proposals and need venue-specific formatting requirements and templates.
    2 repo stars
60. ▌
    Cellxgene Census · lord1egypt bundle

    Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.
    2 repo stars
61. ▌
    Clinical Reports · lord1egypt bundle

    Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.
    2 repo stars
62. ▌
    Cryptography API · lord1egypt

    Symmetric/asymmetric encryption, hashing, password salting, and message verification via cryptography library.
    2 repo stars
63. ▌
    Function Calling · lord1egypt

    Registering custom Python tools, handling parallel function calls, and executing callback routines.
    2 repo stars
64. ▌
    Multimodal Video · lord1egypt

    Native video understanding, event timestamping, frame sampling, and video narrative generation.
    2 repo stars
65. ▌
    Nextjs Framework · lord1egypt

    Building modern React web applications with Server-Side Rendering (SSR), API routes, and routing layouts in Next.js.
    2 repo stars
66. ▌
    Optimize For Gpu · lord1egypt bundle

    GPU-accelerate Python code using CuPy, Numba CUDA, Warp, cuDF, cuML, cuGraph, KvikIO, cuCIM, cuxfilter, cuVS, cuSpatial, and RAFT. Use whenever the user mentions GPU/CUDA/NVIDIA acceleration, or wants to speed up NumPy, pandas, scikit-learn, scikit-image, NetworkX, GeoPandas, or Faiss workloads. Covers physics simulation, differentiable rendering, mesh ray casting, particle systems (DEM/SPH/fluids), vector/similarity search, GPUDirect Storage file IO, interactive dashboards, geospatial analysis, medical imaging, and sparse eigensolvers. Also use when you see CPU-bound Python code (loops, large arrays, ML pipelines, graph analytics, image processing) that would benefit from GPU acceleration, even if not explicitly requested.
    2 repo stars
67. ▌
    Resend Email API · lord1egypt

    Sending programmatic, HTML transactional emails with custom domains using Resend.
    2 repo stars
68. ▌
    Usfiscaldata · lord1egypt bundle

    Query the U.S. Treasury Fiscal Data API for federal financial data including national debt, government spending, revenue, interest rates, exchange rates, and savings bonds. Access 54 datasets and 182 data tables with no API key required. Use when working with U.S. federal fiscal data, national debt tracking (Debt to the Penny), Daily Treasury Statements, Monthly Treasury Statements, Treasury securities auctions, interest rates on Treasury securities, foreign exchange rates, savings bonds, or any U.S. government financial statistics.
    2 repo stars
69. ▌
    Nginx Routing · lord1egypt

    Configuring Nginx reverse proxy routing, load balancers, rate limits, and SSL termination.
    2 repo stars
70. ▌
    Open Notebook · lord1egypt bundle

    Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when organizing research materials into notebooks, ingesting diverse content sources (PDFs, videos, audio, web pages, Office documents), generating AI-powered notes and summaries, creating multi-speaker podcasts from research, chatting with documents using context-aware AI, searching across materials with full-text and vector search, or running custom content transformations. Supports 16+ AI providers including OpenAI, Anthropic, Google, Ollama, Groq, and Mistral with complete data privacy through self-hosting.
    2 repo stars
71. ▌
    Prisma Orm DB · lord1egypt

    Type-safe database ORM management, migrations, and CRUD operations using Prisma in Node.js or Python.
    2 repo stars
72. ▌
    RAG Vector DB · lord1egypt

    Retrieval-Augmented Generation implementation using vector databases, embedding models, and query routines.
    2 repo stars
73. ▌
    Redis Caching · lord1egypt

    Distributed key-value caching, session storage, and rate limiting with Upstash or standard Redis.
    2 repo stars
74. ▌
    Skill Run App · lord1egypt

    Skill for launching and driving the current project's app through its real runtime surface using project-specific run skills or fallback patterns
    2 repo stars
75. ▌
    Vite Frontend · lord1egypt

    Initializing, structuring, and bundling client-side Single-Page Applications (SPA) with Vite.
    2 repo stars
76. ▌
    AWS S3 Storage · lord1egypt

    Uploading, downloading, and managing static file assets in Amazon Web Services S3 Buckets using Boto3.
    2 repo stars
77. ▌
    Code Execution · lord1egypt

    Enabling Gemini's native sandboxed Python runtime, capturing code outputs, and mathematical/scientific executions.
    2 repo stars
78. ▌
    Email Delivery · lord1egypt

    Routing transactional user emails via SMTP, Resend, or SendGrid APIs in Python.
    2 repo stars
79. ▌
    Generate Image · lord1egypt bundle

    Generate or edit images using AI models (FLUX, Nano Banana 2). Use for general-purpose image generation including photos, illustrations, artwork, visual assets, concept art, and any image that is not a technical diagram or schematic. For flowcharts, circuits, pathways, and technical diagrams, use the scientific-schematics skill instead.
    2 repo stars
80. ▌
    JWT Auth Utils · lord1egypt

    Generating, signing, and validating JSON Web Tokens (JWT) for secure REST APIs and user sessions.
    2 repo stars
81. ▌
    Context Caching · lord1egypt

    Large context caching, cached token management, TTL config, and cost optimization.
    2 repo stars
82. ▌
    Cron Scheduling · lord1egypt

    Scheduling recurring scripts, parsing crontab syntax, and implementing scheduled background loops.
    2 repo stars
83. ▌
    Database Lookup · lord1egypt bundle

    Search 78 public scientific, biomedical, materials science, and economic databases via REST APIs. Covers physics/astronomy (NASA, NIST, SDSS, SIMBAD), earth/environment (USGS, NOAA, EPA), chemistry/drugs (PubChem, ChEMBL, DrugBank, FDA, KEGG, ZINC, BindingDB), materials (Materials Project, COD), biology/genomics (Reactome, UniProt, STRING, Ensembl, NCBI Gene, GEO, GTEx, PDB, AlphaFold, InterPro, BioGRID, Gene Ontology, dbSNP, gnomAD, ENCODE, Human Protein Atlas, Human Cell Atlas), disease/clinical (COSMIC, Open Targets, ClinicalTrials.gov, OMIM, ClinVar, GDC/TCGA, cBioPortal, DisGeNET, GWAS Catalog), regulatory (FDA, USPTO, SEC EDGAR), economics/finance (FRED, World Bank, US Treasury), demographics (US Census, Eurostat, WHO). Use when looking up compounds, genes, proteins, pathways, variants, clinical trials, patents, economic indicators, or any public database API query.
    2 repo stars
84. ▌
    Express Routing · lord1egypt

    Building Express web server endpoints, routing HTTP requests, and configuring server middlewares in Node.js.
    2 repo stars
85. ▌
    GRAPHQL Queries · lord1egypt

    Constructing GraphQL query client configurations and mutation payloads in Python.
    2 repo stars
86. ▌
    Hugging Science · lord1egypt bundle

    Use when the user is doing AI/ML work in a scientific domain — biology, chemistry, physics, astronomy, climate, genomics, materials science, medicine, ecology, energy, conservation, engineering, mathematics, scientific reasoning, drug discovery, protein design, weather modeling, theorem proving, single-cell, PDE solving, or anything similar. Hugging Science (huggingscience.co) is a curated catalog of scientific datasets, models, blog posts, and interactive Spaces; the `hugging-science` org on Hugging Face hosts community datasets, models, and demo Spaces. This skill helps you discover the right resource AND actually use it — loading datasets via `datasets`, running models via `transformers` or the HF Inference API, calling Spaces like BoltzGen via `gradio_client`, and citing blog posts for methodology. Trigger this skill whenever a user mentions a scientific ML task, asks for "a dataset/model for X" where X is a scientific topic, wants to fine-tune on scientific data, asks about protein / molecule / genome /
    2 repo stars
87. ▌
    Python Unittest · lord1egypt

    Writing test cases, assertions, mocking API calls, and running test runner pipelines using unittest.
    2 repo stars
88. ▌
    Research Grants · lord1egypt bundle

    Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.
    2 repo stars
89. ▌
    Research Lookup · lord1egypt bundle

    Look up current research information using parallel-cli search (primary, fast web search), the Parallel Chat API (deep research), or Perplexity sonar-pro-search (academic paper searches). Automatically routes queries to the best backend. Use for finding papers, gathering research data, and verifying scientific information. Note: query text is transmitted to api.parallel.ai (PARALLEL_API_KEY) and, for academic searches, to openrouter.ai (OPENROUTER_API_KEY).
    2 repo stars
90. ▌
    Scikit Survival · lord1egypt bundle

    Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random Survival Forests, Gradient Boosting models, or Survival SVMs, evaluating survival predictions with concordance index or Brier score, handling competing risks, or implementing any survival analysis workflow with the scikit-survival library.
    2 repo stars
91. ▌
    Skill Debugging · lord1egypt

    Instructions for debugging an issue that the user is encountering in the Claude Code session
    2 repo stars
92. ▌
    Sqlite Database · lord1egypt

    Querying, migrating, and writing relational tables inside embedded SQLite databases.
    2 repo stars
93. ▌
    Tailwind Design · lord1egypt

    Configuring and structuring styling components with utility-first CSS classes in HTML or JSX.
    2 repo stars
94. ▌
    Scvi Tools · lord1egypt bundle

    Deep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer learning, differential expression with uncertainty, or multi-modal integration (TOTALVI, MultiVI). Best for advanced modeling, batch effects, multimodal data. For standard analysis pipelines use scanpy.
    2 repo stars
95. ▌
    Umap Learn · lord1egypt bundle

    UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSCAN), supervised/parametric UMAP, for high-dimensional data.
    2 repo stars
96. ▌
    Bioservices · lord1egypt bundle

    Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.
    2 repo stars
97. ▌
    Peer Review · lord1egypt bundle

    Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validity, reporting standards compliance (CONSORT/STROBE), and constructive feedback. Best for actual review writing, manuscript revision. For evaluating claims/evidence quality use scientific-critical-thinking; for quantitative scoring frameworks use scholar-evaluation.
    2 repo stars
98. ▌
    Statsmodels · lord1egypt bundle

    Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with detailed diagnostics, residuals, and inference. Best for econometrics, time series, rigorous inference with coefficient tables. For guided statistical test selection with APA reporting use statistical-analysis.
    2 repo stars
99. ▌
    Supabase DB · lord1egypt

    Interacting with Supabase databases, user authentication, and storage buckets using the Python client.
    2 repo stars
100. ▌
     Zarr Python · lord1egypt bundle

     Chunked N-D arrays for cloud storage. Compressed arrays, parallel I/O, S3/GCS integration, NumPy/Dask/Xarray compatible, for large-scale scientific computing pipelines.
     2 repo stars