tomevault-io
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- ▌ Debug Firewall · tomevault-io bundleDebug the AWF firewall by inspecting Docker containers (awf-squid, awf-agent), analyzing Squid access logs, checking iptables rules, and troubleshooting blocked domains or network issues. Use when this capability is needed.
- ▌ Flow Plan Review · tomevault-io bundleCarmack-level plan review via rp-cli context builder + chat. Use when reviewing implementation plans, architecture docs, or design specs. Triggers on mentions of plan review, design review, or architecture review. Use when this capability is needed.
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- ▌ AI LLM Skills Guide · tomevault-io bundleGuide for AI Agents and LLM development skills including RAG, multi-agent systems, prompt engineering, memory systems, and context engineering. Use when this capability is needed.
- ▌ E2e Developer · tomevault-io bundleE2E（End-to-End）テスト開発時に必要な検証を実施するスキルです。Cucumber + Playwrightによるフロントエンドとバックエンドの統合テストを含みます。E2Eテスト（test/e2e/）の変更時に使用してください。 Use when this capability is needed.
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- ▌ Prepare Commit · tomevault-io bundlePrepares the codebase for a commit by formatting code and helping identify temporary comments. Use when this capability is needed.
- ▌ Push To Github · tomevault-io bundleRuns all necessary checks (lint, tests) and pushes to GitHub. Use this as the final safety gate.
- ▌ Verify Changes · tomevault-io bundleRuns unit tests to quickly verify changes during the development loop.
- ▌ Secops Setup Gemini · tomevault-io bundleHelps the user configure the Google SecOps Remote MCP Server for Gemini CLI. Use this when the user asks to "set up" or "configure" the security tools for Gemini CLI. Use when this capability is needed.
- ▌ Agent Dx CLI Scale · tomevault-io bundleUse when working with a scoring scale for evaluating how well a CLI is designed for AI agents, based on the "Rewrite Your CLI for AI Agents" principles.
- ▌ Gws Agent CLI Operations · tomevault-io bundleComprehensive instructions for executing tasks using the gws (Google Workspace) CLI or similar agent-first command-line tools. Use this skill when interacting with machine-readable CLIs to ensure safe mutations, enforce context window discipline, and avoid input hallucinations. Use when this capability is needed.
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- ▌ Sr Eng Review · tomevault-io bundleReview git branch using diff against main. Always use this skill after you complete a unit of work, or complete a major step in a plan. Use when this capability is needed.
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- ▌ Opus 4 5 Migration · tomevault-io bundleMigrate prompts and code from Claude Sonnet 4.0, Sonnet 4.5, or Opus 4.1 to Opus 4.5. Use when the user wants to update their codebase, prompts, or API calls to use Opus 4.5. Handles model string updates and prompt adjustments for known Opus 4.5 behavioral differences. Does NOT migrate Haiku 4.5. Use when this capability is needed.
- ▌ Bio Imaging Mass Cytometry Cell Segmentation · tomevault-io bundleCell segmentation from multiplexed tissue images. Covers deep learning (Cellpose, Mesmer) and classical approaches for nuclear and whole-cell segmentation. Use when extracting single-cell data from IMC or MIBI images after preprocessing. Use when this capability is needed.
- ▌ Bio Temporal Genomics Circadian Rhythms · tomevault-io bundleDetects circadian and ultradian rhythms in time-series omics data using CosinorPy cosinor models, MetaCycle (JTK_CYCLE, ARSER), and RAIN non-parametric tests. Fits cosine models to estimate phase and amplitude, tests rhythmicity significance at pre-specified periods. Use when testing for 24-hour or other known-period oscillations in circadian, feeding-fasting, or light-dark cycle experiments. Not for unknown-period discovery (see temporal-genomics/periodicity-detection). Use when this capability is needed.
- ▌ Bio Clip Seq Clip Peak Calling · tomevault-io bundleCall protein-RNA binding site peaks from CLIP-seq data using CLIPper, PureCLIP, or Piranha. Use when identifying RBP binding sites from aligned CLIP reads. Use when this capability is needed.
- ▌ Bio Ecological Genomics Community Ecology · tomevault-io bundleAnalyzes community composition using constrained ordination (CCA, RDA, db-RDA), variance partitioning (varpart), indicator species analysis (indicspecies multipatt), and distance-based environmental gradient methods with vegan. Links species composition to environmental explanatory variables. Use when testing how environmental gradients structure species communities, identifying habitat indicator taxa, or partitioning explained variation among predictors. Not for basic unconstrained ordination and PERMANOVA (see microbiome/diversity-analysis).
- ▌ Bio Single Cell Doublet Detection · tomevault-io bundleDetect and remove doublets (multiple cells captured in one droplet) from single-cell RNA-seq data. Uses Scrublet (Python), DoubletFinder (R), and scDblFinder (R). Essential QC step before clustering to avoid artificial cell populations. Use when identifying and removing doublets from scRNA-seq data. Use when this capability is needed.
- ▌ Bio Hi C Analysis Matrix Operations · tomevault-io bundleBalance, normalize, and transform Hi-C contact matrices using cooler and cooltools. Apply iterative correction (ICE), compute expected values, and generate observed/expected matrices. Use when normalizing or transforming Hi-C matrices. Use when this capability is needed.
- ▌ Bio Clinical Databases Myvariant Queries · tomevault-io bundleQuery myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request. Use when annotating variants with clinical and population data from multiple sources simultaneously. Use when this capability is needed.
- ▌ Bio Machine Learning Omics Classifiers · tomevault-io bundleBuilds classification models for omics data using RandomForest, XGBoost, and logistic regression with sklearn-compatible APIs. Includes proper preprocessing and evaluation metrics for biomarker classifiers. Use when building diagnostic or prognostic classifiers from expression or variant data.
- ▌ Bio Primer Design Primer Validation · tomevault-io bundleValidate PCR primers for specificity, dimers, hairpins, and secondary structures using primer3-py thermodynamic calculations. Check self-complementarity, heterodimer formation, and 3' stability. Use when validating primer specificity and properties. Use when this capability is needed.
- ▌ Bio Proteomics Protein Inference · tomevault-io bundleProtein grouping and inference from peptide identifications. Use when resolving protein ambiguity from shared peptides. Handles protein groups and protein-level FDR control using parsimony and probabilistic approaches. Use when this capability is needed.
- ▌ Bio Read Qc Quality Filtering · tomevault-io bundleFilter reads by quality scores, length, and N content using Trimmomatic and fastp. Apply sliding window trimming, remove low-quality bases from read ends, and discard reads below thresholds. Use when reads have poor quality tails or require minimum quality for downstream analysis. Use when this capability is needed.
- ▌ Bio Pathway Reactome · tomevault-io bundleReactome pathway enrichment using ReactomePA package. Use when analyzing gene lists against Reactome's curated peer-reviewed pathway database. Performs over-representation analysis and GSEA with visualization and pathway hierarchy exploration. Use when this capability is needed.
- ▌ Bio Reporting Rmarkdown Reports · tomevault-io bundleCreate reproducible bioinformatics analysis reports with R Markdown including code, results, and visualizations in HTML, PDF, or Word format. Use when generating analysis reports with RMarkdown. Use when this capability is needed.
- ▌ Bio Rna Structure Structure Probing · tomevault-io bundleAnalyzes experimental RNA structure probing data from SHAPE-MaP and DMS-MaPseq experiments using ShapeMapper2. Converts mutation rates to per-nucleotide reactivity profiles that constrain structure prediction. Use when processing SHAPE-MaP or DMS-MaPseq sequencing data to obtain experimental RNA structure information.
- ▌ Bio Machine Learning Survival Analysis · tomevault-io bundleAnalyzes time-to-event data using Kaplan-Meier curves, log-rank tests, and Cox proportional hazards regression with lifelines. Builds survival models from clinical and omics features. Use when predicting patient survival or modeling time-to-event outcomes.
- ▌ Bio Virtual Screening · tomevault-io bundlePerforms structure-based virtual screening using AutoDock Vina 1.2 for molecular docking. Prepares receptor PDBQT files, generates ligand conformers, defines binding site boxes, and ranks compounds by predicted binding affinity. Use when screening chemical libraries against a protein structure to find potential binders. Use when this capability is needed.
- ▌ Test Amplification · tomevault-io bundleMethodical bug-driven test amplification for pygraphistry features. Use when hardening a feature area via user-workflow exploration, 5-Whys retrospectives, bug-taxonomy derivation, concrete test planning, implementation, and safety-gated validation. Use when this capability is needed.
- ▌ Dotnet Coder · tomevault-io bundleYou are a coder / agent working on a dotnet codebase using the C# language and / or using dotnet tooling. Use when this capability is needed.
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- ▌ Arc Writing Tasks · tomevault-io bundleUse when breaking down features into executable tasks, when preparing for implementation, or when tasks need exact code and commands
- ▌ Greptimedb Trigger · tomevault-io bundleGuide for creating GreptimeDB triggers, by which we can trigger external webhook like Alertmanager. This feature can be used as alternative to Prometheus alerting rule. Use when this capability is needed.
- ▌ Grid Ctf Ops · tomevault-io bundleOperational knowledge for the grid_ctf scenario including strategy playbook, lessons learned, and resource references. Use when generating, evaluating, coaching, or debugging grid_ctf strategies. Use when this capability is needed.
- ▌ Clerk Webhooks · tomevault-io bundleClerk webhooks for real-time events and data syncing. Listen for user creation, updates, deletion, and organization events. Build event-driven features like database sync, notifications, integrations. Use when this capability is needed.
- ▌ Usage Watcher · tomevault-io bundleReduce paid credit spend and rate-limit risk with deterministic usage analysis and budget guardrails. Use when planning high-volume agent work, reviewing recent burn, or setting lean/standard/surge operating caps. Use when this capability is needed.
- ▌ API Style Guide · tomevault-io bundleStyle and formatting rules for API/SDK documentation, samples, and tutorials. Use when this capability is needed.
- ▌ Call Highlights · tomevault-io bundleUse to capture, tag, and distribute call clips for coaching and enablement Use when this capability is needed.
- ▌ Discovery Calls · tomevault-io bundleUse when planning, running, or summarizing discovery calls to uncover pain, timeline, and authority.
- ▌ Nurture Testing · tomevault-io bundleUse when planning, executing, and logging nurture experiments and regression
- ▌ Stakeholder Ops · tomevault-io bundleUse to coordinate approvals, communications, and accountability across Use when this capability is needed.
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- ▌ Mp3 Fix Comments · tomevault-io bundleFix MP3 comment field conflicts by removing iTunes normalization data and stale ID3v1 comment frames while preserving Songs-DB_Custom1. Supports single file and batch directory mode. Always defaults to dry-run for safety. Use when this capability is needed.
- ▌ Agent Orchestrator · tomevault-io bundleTop-level orchestration agent for all implementation work. Analyzes tasks, selects the right agents, coordinates multi-domain work, and ensures knowledge files stay in sync. Consult this agent before starting any non-trivial implementation. Manages ui-designer and web3-implementer as primary subagent trees, plus shared specialists. Use when this capability is needed.
- ▌ Autosnippet Devdocs · tomevault-io bundleGenerate and publish project Wiki documentation using autosnippet_wiki MCP tool (plan → write → finalize). Use when user says "generate wiki/docs", "write documentation", or agent needs to produce structured project documentation from the knowledge base. Use when this capability is needed.
- ▌ Autosnippet Recipes · tomevault-io bundleProvides this project's Recipe-based context to the agent. Recipes are the project's standard knowledge (code patterns + usage guides + structured relations). Use when answering about project standards, Guard, conventions, or when suggesting code. Supports in-context lookup, terminal search (asd search), and on-demand semantic search via MCP tool autosnippet_search (mode=context).
- ▌ AWS Cloudwatch Monitoring · tomevault-io bundleAWS CloudWatch metrics, alarms, dashboards, log insights, and application monitoring for the CIA platform Use when this capability is needed.
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- ▌ Form Builder · tomevault-io bundleGenerate complete React Hook Form code from natural language field definitions. Use when the user wants to scaffold a typed form with validation and error handling. Use when this capability is needed.
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- ▌ Bombshell Dev Clack · tomevault-io bundleALWAYS use when writing code importing \"@clack/prompts\". Consult for debugging, best practices, or modifying @clack/prompts, clack/prompts, clack prompts, clack. Use when this capability is needed.
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- ▌ TS Circuit Dsl · tomevault-io bundleWrite and review TypeScript circuit DSL for elec, then generate canonical scm with ts2scm and validate with fmt/lint. Use when this capability is needed.
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- ▌ Frontend Testing Guide · tomevault-io bundleComprehensive guide for frontend testing including unit tests, integration tests, component testing, and E2E testing with Jest and Playwright. Invoke when user needs to write frontend tests, fix test failures, or improve test coverage. Use when this capability is needed.
- ▌ Heimeshoff Cinemarco Fsharp Frontend · tomevault-io bundleF# Frontend Implementation (Elmish + Feliz)
- ▌ Releaseguard · tomevault-io bundleScan, harden, sign, and verify release artifacts with ReleaseGuard — the artifact policy engine for dist/ and release/ outputs. Use when this capability is needed.
- ▌ Manage Github Issues · tomevault-io bundleReviews project roadmaps and requirements to generate, audit, and triage GitHub Issues. Keeps any project on track by syncing planning docs with actionable issues. Use when creating issues for a phase or milestone, auditing existing issues, or triaging and prioritizing open work. Use when this capability is needed.
- ▌ Install Claudesidian Command · tomevault-io bundleInstall claudesidian shell command to launch Claude Code from anywhere. Use when the user wants to install a shell alias/launcher for their vault, or asks to set up the claudesidian command. Use when this capability is needed.
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- ▌ Langgraph Master · tomevault-io bundleUse when specifying or implementing LangGraph applications - from architecture planning and specification writing to actual code implementation. Also use for designing agent workflows or learning LangGraph patterns. This is a comprehensive guide for building AI agents with LangGraph, covering core concepts, architecture patterns, memory management, tool integration, and advanced features.
- ▌ Documentation Rules · tomevault-io bundleAll documentation in English. Root README concise, detailed docs in `/docs`. Use when this capability is needed.
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- ▌ Python Debug Pattern · tomevault-io bundleDebug Python script execution failures by capturing full output with exit codes and verifying working directory before file operations Use when this capability is needed.
- ▌ Fecfile · tomevault-io bundleAnalyze FEC (Federal Election Commission) campaign finance filings. Use when working with FEC filing IDs, campaign finance data, contributions, disbursements, or political committee financial reports. Provides the proper workflow for the fec-api MCP tools (search_committees, get_filings). Use when this capability is needed.
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- ▌ Scholarag · tomevault-io bundleBuild PRISMA 2020-compliant systematic literature review systems with RAG-powered analysis in VS Code. Use when researcher needs automated paper retrieval (Semantic Scholar, OpenAlex, arXiv), AI-assisted PRISMA screening (50% or 90% threshold), vector database creation (ChromaDB), or research conversation interface. Supports knowledge_repository (comprehensive, 15K+ papers, teaching/exploration) and systematic_review (publication-quality, 50-300 papers, meta-analysis) modes. Conversation-first workflow with 7 stages. Use when this capability is needed.
- ▌ Gh Issue Fix Flow · tomevault-io bundleEnd-to-end GitHub issue fix workflow using gh, local code changes, builds/tests, and git push. Use when asked to take an issue number, inspect the issue via gh, implement a fix, run just builds/tests, commit with a closing message, and push. Use when this capability is needed.
- ▌ Brainstorming Ideas Into Designs · tomevault-io bundleInteractive idea refinement using Socratic method to develop fully-formed designs when partner describes any blog or newsletter idea, before writing a pitch or articles Use when this capability is needed.
- ▌ Req Create · tomevault-io bundleCreate structured requirement documents from user ideas. Use when capturing new features, tasks, or user stories that need documentation in requirement/INDEX.md. Use when this capability is needed.
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- ▌ Sqlite Tools · tomevault-io bundleSQLite 数据库工具集，用于操作 SQLite 数据库文件。支持 .db、.sqlite、.sqlite3、.vscdb 等常见扩展名。无需额外安装依赖，使用 Python 内置 sqlite3 模块。支持 Windows、macOS 和 Linux 平台。 Use when this capability is needed.
- ▌ Claude Md Authoring · tomevault-io bundleWrite and optimize CLAUDE.md files. Use when creating, improving, or reviewing CLAUDE.md for best practices, or troubleshooting ignored instructions. Also applies to AGENTS.md. Use when this capability is needed.
- ▌ Rust Anti Pattern · tomevault-io bundleRust anti-patterns and common mistakes expert. Handles code review issues with clone abuse, unwrap in production, String misuse, index loops, and refactoring guidance. Use when this capability is needed.
- ▌ Geo Optimizer · tomevault-io bundle生成式引擎优化专家，分析和优化内容在 AI 搜索引擎（ChatGPT、Claude、Perplexity、Google SGE）中的可见性和引用率。 Use when this capability is needed.
- ▌ Wellally Tech · tomevault-io bundleIntegrate digital health data sources (Apple Health, Fitbit, Oura Ring) and connect to WellAlly.tech knowledge base. Import external health device data, standardize to local format, and recommend relevant WellAlly.tech knowledge base articles based on health data. Support generic CSV/JSON import, provide intelligent article recommendations, and help users better manage personal health data. Use when this capability is needed.
- ▌ Hf Subagent Driven Dev · tomevault-io bundle适用于已批准 task plan 中单一活跃任务可被完整封装给 fresh implementer subagent 的实现场景。不适用于任务强耦合、缺少可读上下文、需并行多任务、或 reviewer/gate verdict 可被跳过的场景。 Use when this capability is needed.
- ▌ Triage Expert · tomevault-io bundleSpecializes in context gathering, initial problem diagnosis, and routing issues to appropriate domain experts. Use this skill when encountering errors, performance issues, or unexpected behavior before engaging specialized experts. Use when this capability is needed.
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- ▌ Argocd Audit · tomevault-io bundleAudits ArgoCD Application manifests and raw K8s resources for anti-patterns, security issues, and best practice violations. Use when asked to audit, review, or check ArgoCD/GitOps quality. Generates a comprehensive report under reports/YYYY-MM-DD/argocd-audit.md. (project) Use when this capability is needed.
- ▌ CI CD Manager · tomevault-io bundleManage and debug CI/CD pipelines from Claude Code. View workflow status, debug failed runs, re-run jobs, manage Dependabot PRs, check Cloudflare Pages deployment status, and parse Lighthouse CI results. Use when this capability is needed.
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