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1. ▌
   Doing A Simple Two Stage Fanout · tools-only bundle

   Use when analyzing a large corpus of text, code, or data that exceeds a single agent's effective context - orchestrates parallel Worker subagents, Critic review subagents, and a final Summarizer subagent with task tracking and failure recovery
   7 repo stars
2. ▌
   Execution · tools-only bundle

   SAM Stage 5 — Stateless execution of a single task in a fresh agent session. The task file IS the complete prompt containing all context needed. Used when dispatching a task to an agent; produces the EXECUTION artifact with implementation results and verification output.
   7 repo stars
3. ▌
   Bio Workflows Expression To Pathways · tools-only bundle

   Workflow from differential expression results to functional enrichment analysis. Covers GO, KEGG, Reactome enrichment with clusterProfiler and visualization. Use when taking DE results to pathway enrichment.
   7 repo stars
4. ▌
   Transparent UI · tools-only bundle

   Create standalone debugging interfaces that reveal the internal workings of complex systems through interactive visualization. Use when the user wants to understand how something works, debug internal state, visualize data flow, see what happens when they interact with the system, or build a debug panel for any complex mechanism. Triggers on requests like "I don't understand how this works", "show me what's happening", "visualize the state machine", "build a debug view for this", "help me see the data flow", "make this transparent", or any request to understand, debug, or visualize internal system behavior. Applies to state machines, rendering systems, event flows, algorithms, animations, data pipelines, CSS calculations, database queries, or any system with non-obvious internal workings.
   7 repo stars
5. ▌
   Bio Spatial Transcriptomics Image Analysis · tools-only bundle

   Process and analyze tissue images from spatial transcriptomics data using Squidpy. Extract image features, segment cells/nuclei, and compute morphological features from H&E or IF images. Use when processing tissue images for spatial transcriptomics.
   7 repo stars
6. ▌
   Open Construction Estimate · tools-only bundle

   Access and utilize open construction pricing databases. Match BIM elements to standardized work items, calculate costs using public unit price databases with 55,000+ work items.
   7 repo stars
7. ▌
   Bio Variant Annotation · tools-only bundle

   Comprehensive variant annotation using bcftools annotate/csq, VEP, SnpEff, and ANNOVAR. Add database annotations, predict functional consequences, and assess clinical significance. Use when annotating variants with functional and clinical information.
   7 repo stars
8. ▌
   Plugin Creator · tools-only bundle

   Orchestrates specialized agents to create high-quality Claude Code plugins. Delegates to researcher agents for domain knowledge, Explore agents for code discovery, validation agents for official docs verification, and review agents for quality checks. Use when creating new plugins or improving existing ones.
   7 repo stars
9. ▌
   SEO Programmatic · tools-only bundle

   Programmatic SEO planning and analysis for pages generated at scale from data sources. Covers template engines, URL patterns, internal linking automation, thin content safeguards, and index bloat prevention. Use when user says "programmatic SEO", "pages at scale", "dynamic pages", "template pages", "generated pages", or "data-driven SEO".
   7 repo stars
10. ▌
    Bio Workflows Merip Pipeline · tools-only bundle

    End-to-end MeRIP-seq analysis from FASTQ to m6A peaks and differential methylation. Use when analyzing epitranscriptomic m6A modifications from immunoprecipitation data.
    7 repo stars
11. ▌
    Bio Spatial Transcriptomics Spatial Communication · tools-only bundle

    Analyze cell-cell communication in spatial transcriptomics data using ligand-receptor analysis with Squidpy. Infer intercellular signaling, identify communication pathways, and visualize interaction networks. Use when analyzing cell-cell communication in spatial context.
    7 repo stars
12. ▌
    Bio Spatial Transcriptomics Spatial Preprocessing · tools-only bundle

    Quality control, filtering, normalization, and feature selection for spatial transcriptomics data. Calculate QC metrics, filter spots/cells, normalize counts, and identify highly variable genes. Use when filtering and normalizing spatial transcriptomics data.
    7 repo stars
13. ▌
    Weather Impact Analysis · tools-only bundle

    Analyze weather data impact on construction schedules. Predict weather delays, optimize work scheduling based on forecasts, and calculate weather-related risk factors for project planning.
    7 repo stars
14. ▌
    Bio Workflows Hic Pipeline · tools-only bundle

    End-to-end Hi-C analysis workflow from contact pairs to compartments, TADs, and loops. Covers cooler matrices, cooltools analysis, and visualization. Use when processing Hi-C data to compartments and TADs.
    7 repo stars
15. ▌
    Openai Doc · tools-only bundle

    Use when the task involves reading, creating, or editing `.docx` documents, especially when formatting or layout fidelity matters; prefer `python-docx` plus the bundled `scripts/render_docx.py` for visual checks. Originally from OpenAI's curated skills catalog.
    7 repo stars
16. ▌
    Policyengine Us Data · tools-only bundle

    US survey data enhancement - CPS with PUF imputation patterns and cross-repo variable workflows
    7 repo stars
17. ▌
    Dagre React Flow · tools-only bundle

    Automatic graph layout using dagre with React Flow (@xyflow/react). Use when implementing auto-layout, hierarchical layouts, tree structures, or arranging nodes programmatically. Triggers on dagre, auto-layout, automatic layout, getLayoutedElements, rankdir, hierarchical graph.
    7 repo stars
18. ▌
    Bio Ecological Genomics Conservation Genetics · tools-only bundle

    Assesses genetic health of populations for conservation using effective population size estimation (GONE2 for recent Ne trajectory, NeEstimator for contemporary Ne, Stairway Plot 2 and PSMC for historical Ne), F-statistics (hierfstat), runs of homozygosity (detectRUNS), and genetic diversity metrics. Use when estimating effective population size, detecting inbreeding or bottlenecks, or assessing genetic diversity in threatened species from microsatellite or SNP data.
    7 repo stars
19. ▌
    Bio Rna Structure Structure Probing · tools-only bundle

    Analyzes experimental RNA structure probing data from SHAPE-MaP and DMS-MaPseq experiments using ShapeMapper2. Converts mutation rates to per-nucleotide reactivity profiles that constrain structure prediction. Use when processing SHAPE-MaP or DMS-MaPseq sequencing data to obtain experimental RNA structure information.
    7 repo stars
20. ▌
    Mimic Table Relationships · tools-only bundle

    Understand MIMIC-IV table relationships, join patterns, and identifier hierarchy. Use for correct data linkage, avoiding duplicates, and proper temporal joins.
    7 repo stars
21. ▌
    Bio Workflows Outbreak Pipeline · tools-only bundle

    End-to-end outbreak investigation from pathogen isolates to transmission networks. Orchestrates MLST typing, AMR surveillance, phylodynamic dating, and transmission inference with TransPhylo. Use when investigating disease outbreaks or tracking pathogen transmission chains.
    7 repo stars
22. ▌
    Quiz Generator · tools-only bundle

    This skill generates interactive multiple-choice quizzes for each chapter of an intelligent textbook, with questions aligned to specific concepts from the learning graph and distributed across Bloom's Taxonomy cognitive levels to assess student understanding effectively. Use this skill after chapter content has been written and the learning graph exists.
    7 repo stars
23. ▌
    Apollo Data Handling · tools-only bundle

    Apollo.io data management and compliance. Use when handling contact data, implementing GDPR compliance, or managing data exports and retention. Trigger with phrases like "apollo data", "apollo gdpr", "apollo compliance", "apollo data export", "apollo data retention", "apollo pii".
    7 repo stars
24. ▌
    Craftedwell Brand · tools-only bundle

    CraftedWell brand guidelines for presentations and documents. Use this skill whenever creating or styling documents (docx, pdf) or presentations (pptx) for CraftedWell. Apply warm, artisanal aesthetic with chocolate/caramel color palette, Georgia headings, and Arial body text.
    7 repo stars
25. ▌
    Bio Data Visualization Interactive Visualization · tools-only bundle

    Create interactive HTML plots with plotly and bokeh for exploratory data analysis and web-based sharing of omics visualizations. Use when building zoomable, hoverable plots for data exploration or web dashboards.
    7 repo stars
26. ▌
    Clinical Research Analysis Framework · tools-only bundle

    Guided workflow for statistical and ML analysis of clinical data. Use when planning or executing research analyses on MIMIC, eICU, or similar EHR data. Ensures methodological rigor through structured consultation, assumption checking, and stepwise execution with audit trails.
    7 repo stars
27. ▌
    Security Ownership Map · tools-only bundle

    Analyze git repositories to build a security ownership topology (people-to-file), compute bus factor and sensitive-code ownership, and export CSV/JSON for graph databases and visualization. Trigger only when the user explicitly wants a security-oriented ownership or bus-factor analysis grounded in git history (for example: orphaned sensitive code, security maintainers, CODEOWNERS reality checks for risk, sensitive hotspots, or ownership clusters). Do not trigger for general maintainer lists or non-security ownership questions.
    7 repo stars
28. ▌
    Bio Imaging Mass Cytometry Data Preprocessing · tools-only bundle

    Load and preprocess imaging mass cytometry (IMC) and MIBI data. Covers MCD/TIFF handling, hot pixel removal, and image normalization. Use when starting IMC analysis from raw MCD files or preparing images for segmentation.
    7 repo stars
29. ▌
    Elegant Reports · tools-only bundle

    Generate beautifully designed PDF reports with Nordic/Scandinavian aesthetic. Uses Nutrient DWS API for HTML-to-PDF conversion.
    7 repo stars
30. ▌
    Material Tracking Iot · tools-only bundle

    IoT-based material tracking for construction sites. Monitor material delivery, storage conditions, usage, and inventory with sensors, RFID, GPS, and real-time dashboards.
    7 repo stars
31. ▌
    Bio Chipseq Motif Analysis · tools-only bundle

    De novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP. Identify transcription factor binding motifs in ChIP-seq, ATAC-seq, or other genomic peak data. Use when finding enriched DNA motifs in peak sequences.
    7 repo stars
32. ▌
    Bio Machine Learning Prediction Explanation · tools-only bundle

    Explains machine learning predictions on omics data using SHAP values and LIME for feature attribution. Identifies which genes or features drive classifier decisions. Use when interpreting biomarker classifiers or understanding model predictions.
    7 repo stars
33. ▌
    Langgraph Implementation · tools-only bundle

    Implements stateful agent graphs using LangGraph. Use when building graphs, adding nodes/edges, defining state schemas, implementing checkpointing, handling interrupts, or creating multi-agent systems with LangGraph.
    7 repo stars
34. ▌
    Databricks Core Workflow A · tools-only bundle

    Execute Databricks primary workflow: Delta Lake ETL pipelines. Use when building data ingestion pipelines, implementing medallion architecture, or creating Delta Lake transformations. Trigger with phrases like "databricks ETL", "delta lake pipeline", "medallion architecture", "databricks data pipeline", "bronze silver gold".
    7 repo stars
35. ▌
    Bio Metagenomics Functional Profiling · tools-only bundle

    Profile functional potential of metagenomes using HUMAnN3 and similar tools. Use when obtaining pathway abundances, gene family counts, or functional annotations from metagenomic data.
    7 repo stars
36. ▌
    XLSX Processing Openai · tools-only bundle

    Toolkit for comprehensive Spreadsheet reading, creation, editing, and analysis with visual quality control. Use to work with spreadsheets (.xlsx, .xlsm, .csv, .tsv) for: (1) Creating new spreadsheets with formulas and formatting, (2) Reading or analyzing tabular data, (3) Modifying existing spreadsheets while preserving formulas, (4) Building financial models with proper formatting, (5) Data visualization with in-sheet charts, or any other spreadsheet tasks.
    7 repo stars
37. ▌
    Loop Fixer · tools-only bundle

    Evaluate-Loop Step 5: FIX. Use this agent when an evaluation (plan or execution) returns FAIL. Takes the evaluator's fix list, creates specific fix tasks in plan.md, executes the fixes, and triggers re-evaluation. Handles the loop-back mechanism of the Evaluate-Loop. Triggered by: evaluation FAIL verdict, 'fix issues', 'address evaluation failures'.
    7 repo stars
38. ▌
    Bio Genome Annotation Annotation Transfer · tools-only bundle

    Transfer gene annotations between genome assemblies using Liftoff for same-species annotation liftover and MiniProt for cross-species protein-to-genome alignment. Enables rapid annotation of new assemblies using existing reference annotations. Use when annotating a new assembly of a species with an existing reference annotation or mapping annotations across related species.
    7 repo stars
39. ▌
    Reproduction Trace Instrumenter · tools-only bundle

    Instruments programs to capture execution traces specifically for reproducing reported bugs, enabling consistent replay and diagnosis of failures. Use this skill when you need to reproduce a bug, capture execution traces for debugging, instrument code to record program behavior, generate replay scripts for bug reproduction, diagnose hard-to-reproduce failures, or perform deterministic replay of program execution. Triggers when users ask to instrument code for tracing, capture execution traces, reproduce bugs, generate replay scripts, or enable deterministic debugging.
    7 repo stars
40. ▌
    XLSX · tools-only bundle

    Comprehensive spreadsheet creation, editing, and analysis with support for formulas, formatting, data analysis, and visualisation. Use when working with spreadsheets (.xlsx, .xlsm, .csv, .tsv) for creating new spreadsheets with formulas and formatting, reading or analysing data, modifying existing spreadsheets while preserving formulas, data analysis and visualisation, or recalculating formulas.
    7 repo stars
41. ▌
    Triage · tools-only bundle

    Strategically route orphaned files and extract scattered tasks
    7 repo stars
42. ▌
    Bio Imaging Mass Cytometry Spatial Analysis · tools-only bundle

    Spatial analysis of cell neighborhoods and interactions in IMC data. Covers neighbor graphs, spatial statistics, and interaction testing. Use when analyzing spatial relationships between cell types, testing for neighborhood enrichment, or identifying cell-cell interaction patterns in imaging mass cytometry data.
    7 repo stars
43. ▌
    Metamorphic Property Extractor · tools-only bundle

    Automatically identify metamorphic properties (symmetry, linearity, additivity, input invariances) from programs or functions. Use when generating metamorphic tests, discovering program properties, validating transformations, or creating test oracles without explicit specifications. Analyzes control flow, data flow, and sample executions to output structured properties for metamorphic test generation and verification.
    7 repo stars
44. ▌
    Gamma Webhooks Events · tools-only bundle

    Handle Gamma webhooks and events for real-time updates. Use when implementing webhook receivers, processing events, or building real-time Gamma integrations. Trigger with phrases like "gamma webhooks", "gamma events", "gamma notifications", "gamma real-time", "gamma callbacks".
    7 repo stars
45. ▌
    Python To Dafny Translator · tools-only bundle

    Translate Python programs into equivalent Dafny code, preserving program semantics and ensuring the generated code is well-typed, executable, and verifiable. Use when the user asks to convert Python code to Dafny, port Python programs to Dafny, add formal verification to Python code, or create Dafny versions of Python algorithms with specifications.
    7 repo stars
46. ▌
    Glossary Generator · tools-only bundle

    This skill automatically generates a comprehensive glossary of terms from a learning graph's concept list, ensuring each definition is precise, concise, distinct, non-circular, and free of business rules. Use this skill when creating a glossary for an intelligent textbook after the learning graph concept list has been finalized.
    7 repo stars
47. ▌
    Image Summarization · tools-only bundle

    Describe images and screenshots by viewing content with multimodal Read tool and documenting only visible elements. Activates on what's in this image, describe this screenshot, summarize this diagram, image summary, what does this screenshot show, explain this diagram, break down this chart. Handles UI screenshots, architecture diagrams, charts, photos, code screenshots, and terminal output. Never infers from filenames.
    7 repo stars
48. ▌
    Bio Spatial Transcriptomics Spatial Data Io · tools-only bundle

    Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. Read Space Ranger outputs, convert formats, and access spatial coordinates. Use when loading Visium, Xenium, MERFISH, or other spatial data.
    7 repo stars
49. ▌
    Etl Pipeline · tools-only bundle

    Build automated ETL (Extract-Transform-Load) pipelines for construction data. Process PDFs, Excel, BIM exports. Generate reports, dashboards, and integrate with other systems. Orchestrate with Airflow or n8n.
    7 repo stars
50. ▌
    Bio Metagenomics Visualization · tools-only bundle

    Visualize metagenomic profiles using R (phyloseq, microbiome) and Python (matplotlib, seaborn). Create stacked bar plots, heatmaps, PCA plots, and diversity analyses. Use when creating publication-quality figures from MetaPhlAn, Bracken, or other taxonomic profiling output.
    7 repo stars
51. ▌
    Bio Temporal Genomics Temporal Grn · tools-only bundle

    Infers dynamic gene regulatory networks from bulk time-series expression data using Granger causality (statsmodels), dynGENIE3 (Extra-Trees on ODE-derived expression derivatives), and dynamic Bayesian networks (bnlearn). Identifies time-delayed regulatory relationships and tracks network rewiring across conditions. Use when inferring causal regulatory relationships from bulk temporal expression data or detecting TF influence propagation over time. Not for static co-expression networks (see gene-regulatory-networks/coexpression-networks).
    7 repo stars
52. ▌
    Book Installer · tools-only bundle

    Installs and configures project infrastructure including MkDocs Material intelligent textbook templates, learning graph viewers, and skill tracking systems. Routes to the appropriate installation guide based on what the user needs to set up.
    7 repo stars
53. ▌
    Rubber Duck · tools-only bundle

    When a user is stuck, frustrated, or describing a problem vaguely, do NOT immediately suggest solutions. First, force structured problem articulation through targeted questions: What did you expect? What happened instead? What have you tried? Only after the problem is clearly defined, propose solutions.
    7 repo stars
54. ▌
    Dspy Optimize Anything · tools-only bundle

    Universal text artifact optimizer using GEPA's optimize_anything API for code, prompts, agent architectures, configs, and more
    7 repo stars
55. ▌
    Explain Concepts · tools-only bundle

    Explains difficult concepts using master teaching methodologies (Feynman, Socratic, Cognitive Load, Dual Coding). Use when user asks to explain a concept, "I don't understand X", ELI5 requests, "what is X", "how does X work".
    7 repo stars
56. ▌
    Requirement Summarizer · tools-only bundle

    Extract and summarize core features, constraints, and priorities from requirement documents. Use when analyzing PRDs, RFCs, business requirements, user stories, epics, or any requirement documentation to identify must-have features, technical constraints, priority levels (P0/P1/P2/MoSCoW), and key decision points. Triggers when users ask to summarize, analyze, extract, or understand requirements from documents.
    7 repo stars
57. ▌
    File Summarization · tools-only bundle

    Summarize files by reading content, extracting key passages, and applying type-specific strategies. Activates on summarize this file, what's in this file, describe this codebase, file summary, analyze this file, tl;dr this file, what does this code do, explain this config, break down this script. Routes to strategies for code, config, data, documentation, markup, and binary files based on extension and word count.
    7 repo stars
58. ▌
    Skillforge · tools-only bundle

    Intelligent skill router and creator. Analyzes ANY input to recommend existing skills, improve them, or create new ones. Uses deep iterative analysis with 11 thinking models, regression questioning, evolution lens, and multi-agent synthesis panel. Phase 0 triage ensures you never duplicate existing functionality.
    7 repo stars
59. ▌
    Bio Expression Matrix Counts Ingest · tools-only bundle

    Load gene expression count matrices from various formats including CSV, TSV, featureCounts, Salmon, kallisto, and 10X. Use when importing quantification results for downstream analysis.
    7 repo stars
60. ▌
    Bio Expression Matrix Metadata Joins · tools-only bundle

    Merge sample metadata with count matrices and add gene annotations. Use when preparing data for differential expression analysis or visualization.
    7 repo stars
61. ▌
    Bio Metabolomics Pathway Mapping · tools-only bundle

    Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Perform pathway enrichment and topology analysis. Use when interpreting metabolomics results in the context of biochemical pathways.
    7 repo stars
62. ▌
    Bio Gene Regulatory Networks Scenic Regulons · tools-only bundle

    Infer gene regulatory networks and identify transcription factor regulons from single-cell RNA-seq data using pySCENIC. Discovers co-expression modules with GRNBoost2, prunes by cis-regulatory motif enrichment, and scores regulon activity per cell with AUCell. Use when identifying transcription factor regulons, scoring TF activity in single cells, or finding master regulators of cell identity.
    7 repo stars
63. ▌
    Bump Version · tools-only bundle

    Automate version bumping following semantic versioning and changelog management. Use when the user wants to bump a version, create a release, update the changelog, or tag a new version in a project using semver conventions and Keep a Changelog format.
    7 repo stars
64. ▌
    Running Clustering Algorithms · tools-only bundle

    Analyze datasets by running clustering algorithms (K-means, DBSCAN, hierarchical) to identify data groups. Use when requesting "run clustering", "cluster analysis", or "group data points". Trigger with relevant phrases based on skill purpose.
    7 repo stars
65. ▌
    4d Simulation · tools-only bundle

    Create 4D construction simulations by linking BIM elements to project schedules. Generate time-based visualizations, sequence analysis, and construction phasing with Gantt integration.
    7 repo stars
66. ▌
    Manus · tools-only bundle

    Delegate complex, long-running tasks to Manus AI agent for autonomous execution. Use when user says 'use manus', 'delegate to manus', 'send to manus', 'have manus do', 'ask manus', 'check manus sessions', or when tasks require deep web research, market analysis, product comparisons, stock analysis, competitive research, document generation, data analysis, or multi-step workflows that benefit from autonomous agent execution with parallel processing.
    7 repo stars
67. ▌
    Bio Ecological Genomics Species Delimitation · tools-only bundle

    Delimits species boundaries from molecular data using distance-based (ASAP), tree-based (bPTP, GMYC), and coalescent (BPP) methods. Compares multiple delimitation results with delimtools. Use when delineating putative species from DNA barcoding data, resolving cryptic species complexes, or validating taxonomic assignments. Emphasizes multi-method consensus following integrative taxonomy best practice.
    7 repo stars
68. ▌
    Bio Chipseq Differential Binding · tools-only bundle

    Differential binding analysis using DiffBind. Compare ChIP-seq peaks between conditions with statistical rigor. Requires replicate samples. Outputs differentially bound regions with fold changes and p-values. Use when comparing ChIP-seq binding between conditions.
    7 repo stars
69. ▌
    Specification To Temporal Logic Generator · tools-only bundle

    Translate natural-language requirements or structured specification documents into formal temporal logic properties (LTL, CTL, safety/liveness properties). Use when users need to formalize requirements for model checking, formal verification, or property specification. Handles embedded/real-time systems, hardware verification, concurrent systems, and reactive systems. Resolves ambiguities, asks clarifying questions when needed, and outputs machine-checkable formulas with explanations. Supports multiple output formats (SPIN, NuSMV, Uppaal, TLA+, Maude).
    7 repo stars
70. ▌
    Bio Multi Omics Mixomics Analysis · tools-only bundle

    Supervised and unsupervised multi-omics integration with mixOmics. Includes sPLS for pairwise integration and DIABLO for multi-block discriminant analysis. Use when performing supervised multi-omics integration or identifying features that discriminate between groups.
    7 repo stars
71. ▌
    React Flow Architecture · tools-only bundle

    Architectural guidance for building node-based UIs with React Flow. Use when designing flow-based applications, making decisions about state management, integration patterns, or evaluating whether React Flow fits a use case.
    7 repo stars
72. ▌
    Invariant Inference · tools-only bundle

    Automatically infer loop invariants for code verification and correctness proofs. Use when analyzing loops to identify properties that hold throughout execution, generating assertions for verification, proving loop correctness, or documenting loop behavior. Supports Python, Java, C/C++, and language-agnostic analysis. Generates invariants as code assertions (assert statements). Triggers when users ask to infer invariants, find loop properties, generate loop assertions, prove loop correctness, or verify loop behavior.
    7 repo stars
73. ▌
    Drone Site Survey · tools-only bundle

    Process drone survey data for construction sites. Generate orthomosaics, DEMs, point clouds, calculate volumes, track progress, and integrate with BIM models for comparison.
    7 repo stars
74. ▌
    Langfuse Data Handling · tools-only bundle

    Manage Langfuse data export, retention, and compliance requirements. Use when exporting trace data, configuring retention policies, or implementing data compliance for LLM observability. Trigger with phrases like "langfuse data export", "langfuse retention", "langfuse GDPR", "langfuse compliance", "export langfuse traces".
    7 repo stars
75. ▌
    Langgraph Code Review · tools-only bundle

    Reviews LangGraph code for bugs, anti-patterns, and improvements. Use when reviewing code that uses StateGraph, nodes, edges, checkpointing, or other LangGraph features. Catches common mistakes in state management, graph structure, and async patterns.
    7 repo stars
76. ▌
    Document Processing · tools-only bundle

    Create, edit, and analyze office documents (PDF, DOCX, PPTX, XLSX). Use when working with PDFs, Word documents, PowerPoint presentations, or Excel spreadsheets. Covers text extraction, form filling, document creation, and data analysis.
    7 repo stars
77. ▌
    Excel Pivot Wizard · tools-only bundle

    Generate pivot tables and charts from raw data using natural language - analyze sales by region, summarize data by category, and create visualizations effortlessly Activates when you request "excel pivot wizard" functionality.
    7 repo stars
78. ▌
    Bio Phylo Tree Visualization · tools-only bundle

    Draw and export phylogenetic trees using Biopython Bio.Phylo with matplotlib. Use when creating publication-quality tree figures, customizing colors and labels, or exporting to image formats.
    7 repo stars
79. ▌
    Bio Read Qc Contamination Screening · tools-only bundle

    Detect sample contamination and cross-species reads using FastQ Screen. Screen reads against multiple reference genomes to identify bacterial, viral, adapter, or sample swap contamination. Use when suspecting cross-contamination or working with samples prone to microbial contamination.
    7 repo stars
80. ▌
    Swiftui · tools-only bundle

    Use when building SwiftUI interfaces for iOS, iPadOS, macOS, or visionOS. Triggers on Liquid Glass adoption, SwiftUI animation/transitions, layout patterns, state management, design tokens, performance optimization, accessibility in SwiftUI, or creating "Apple-level" UI quality.
    7 repo stars
81. ▌
    Golden Principles · tools-only bundle

    Agent-first operating principles adapted from Harness Engineering philosophy. The 10 invariants that govern how agents work in this repository.
    7 repo stars
82. ▌
    Twinmind Sdk Patterns · tools-only bundle

    Apply production-ready TwinMind SDK patterns for TypeScript and Python. Use when implementing TwinMind integrations, refactoring API usage, or establishing team coding standards for meeting AI integration. Trigger with phrases like "twinmind SDK patterns", "twinmind best practices", "twinmind code patterns", "idiomatic twinmind".
    7 repo stars
83. ▌
    Netflows · tools-only bundle

    Network flow extractor that analyzes pcap/pcapng files to identify outbound connections with automatic DNS hostname resolution. Use when you need to enumerate network destinations, identify what hosts a device communicates with, or map IP addresses to hostnames from packet captures.
    7 repo stars
84. ▌
    Linear Solvers · tools-only bundle

    Select and configure linear solvers for systems Ax=b in dense and sparse problems. Use when choosing direct vs iterative methods, diagnosing convergence issues, estimating conditioning, selecting preconditioners, or debugging stagnation in GMRES/CG/BiCGSTAB.
    7 repo stars
85. ▌
    Design Motion Principles · tools-only bundle

    Expert motion and interaction design auditor based on Emil Kowalski, Jakub Krehel, and Jhey Tompkins' techniques. Use when reviewing UI animations, transitions, hover states, or any motion design work. Provides per-designer perspectives with context-aware weighting.
    7 repo stars
86. ▌
    Bio Tcr Bcr Analysis Immcantation Analysis · tools-only bundle

    Analyze BCR repertoires for somatic hypermutation, clonal lineages, and B cell phylogenetics using the Immcantation framework. Use when studying B cell affinity maturation, germinal center dynamics, or antibody evolution.
    7 repo stars
87. ▌
    Openai Spreadsheet · tools-only bundle

    Use when tasks involve creating, editing, analyzing, or formatting spreadsheets (`.xlsx`, `.csv`, `.tsv`) using Python (`openpyxl`, `pandas`), especially when formulas, references, and formatting need to be preserved and verified. Originally from OpenAI's curated skills catalog.
    7 repo stars
88. ▌
    Bio Genome Assembly Metagenome Assembly · tools-only bundle

    Metagenome assembly from long reads using metaFlye and metaSPAdes with binning strategies. Use when reconstructing genomes from microbial communities, recovering metagenome-assembled genomes (MAGs), or resolving strain-level variation in complex samples.
    7 repo stars
89. ▌
    Jira Expert · tools-only bundle

    Atlassian Jira expert for creating and managing projects, planning, product discovery, JQL queries, workflows, custom fields, automation, reporting, and all Jira features. Use for Jira project setup, configuration, advanced search, dashboard creation, workflow design, and technical Jira operations.
    7 repo stars
90. ▌
    Bio Genome Assembly Scaffolding · tools-only bundle

    Scaffold contigs into chromosome-level assemblies using Hi-C data with YaHS, 3D-DNA, SALSA2, and validate with BUSCO and contact maps. Use when scaffolding contigs to chromosome-level assemblies.
    7 repo stars
91. ▌
    5000 Projects Analysis · tools-only bundle

    Analyze 5000+ IFC and Revit projects at scale for patterns, benchmarks, and insights. Big data analysis for construction.
    7 repo stars
92. ▌
    Log Summary Date Ranges · tools-only bundle

    This skill provides guidance for analyzing log files across date ranges and producing summary statistics. Use when tasks involve parsing log files, counting log entries by severity (ERROR, WARNING, INFO), aggregating by date ranges (today, last N days, month-to-date), or producing CSV reports from log data.
    7 repo stars
93. ▌
    Bio Atac Seq Differential Accessibility · tools-only bundle

    Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2. Use when comparing chromatin accessibility between treatment groups, cell types, or developmental stages in ATAC-seq experiments.
    7 repo stars
94. ▌
    Bio Single Cell Perturb Seq · tools-only bundle

    Analyze Perturb-seq and CROP-seq CRISPR screening data integrated with scRNA-seq. Use when identifying gene function through pooled genetic perturbations in single cells.
    7 repo stars
95. ▌
    Creating Data Visualizations · tools-only bundle

    Generate plots, charts, and graphs from data with automatic visualization type selection. Use when requesting "visualization", "plot", "chart", or "graph". Trigger with phrases like 'generate', 'create', or 'scaffold'.
    7 repo stars
96. ▌
    JSON Parser · tools-only bundle

    Parse and validate JSON data from construction APIs, IoT sensors, and BIM exports. Transform nested JSON to flat DataFrames.
    7 repo stars
97. ▌
    Datetime Tool · tools-only bundle

    获取当前时间、格式化日期、计算日期差值、时区转换。 当用户询问时间、日期、时区相关问题时使用此技能。 关键词: 时间, 日期, 时区, 今天, 现在, 星期, 几点
    7 repo stars
98. ▌
    Bio Tcr Bcr Analysis Vdjtools Analysis · tools-only bundle

    Calculate immune repertoire diversity metrics, compare samples, and track clonal dynamics using VDJtools. Use when analyzing repertoire diversity, finding shared clonotypes, or comparing immune profiles between conditions.
    7 repo stars
99. ▌
    Query Optimize · tools-only bundle

    Guidance for SQL query optimization tasks. This skill should be used when optimizing slow SQL queries, improving database performance, or rewriting queries to be more efficient. Covers query plan analysis, benchmarking strategies, and database-specific optimization techniques.
    7 repo stars
100. ▌
     Bio Hi C Analysis Loop Calling · tools-only bundle

     Detect chromatin loops and point interactions from Hi-C data using cooltools, chromosight, and HiCCUPS-like methods. Identify CTCF-mediated loops and enhancer-promoter contacts. Use when detecting chromatin loops from Hi-C data.
     7 repo stars