all publishers

tools-only

@tools-only source repo

17,409 published skills · page 157 of 175

  1. ▌
    Bio Crispr Screens Batch Correction · tools-only bundle
    Batch effect correction for CRISPR screens. Covers normalization across batches, technical replicate handling, and batch-aware analysis. Use when combining screens from multiple batches or correcting systematic technical variation.
    7 repo stars
  2. ▌
    Microimpute · tools-only bundle
    ML-based variable imputation for survey data - used in policyengine-us-data to fill missing values
    7 repo stars
  3. ▌
    UI UX Pro Max · tools-only bundle
    UI/UX design intelligence. 50 styles, 21 palettes, 50 font pairings, 20 charts, 9 stacks (React, Next.js, Vue, Svelte, SwiftUI, React Native, Flutter, Tailwind, shadcn/ui). Actions: plan, build, create, design, implement, review, fix, improve, optimize, enhance, refactor, check UI/UX code. Projects: website, landing page, dashboard, admin panel, e-commerce, SaaS, portfolio, blog, mobile app, .html, .tsx, .vue, .svelte. Elements: button, modal, navbar, sidebar, card, table, form, chart. Styles: glassmorphism, claymorphism, minimalism, brutalism, neumorphism, bento grid, dark mode, responsive, skeuomorphism, flat design. Topics: color palette, accessibility, animation, layout, typography, font pairing, spacing, hover, shadow, gradient. Integrations: shadcn/ui MCP for component search and examples.
    7 repo stars
  4. ▌
    Bio Gene Regulatory Networks Differential Networks · tools-only bundle
    Compare gene regulatory and co-expression networks between biological conditions to identify rewired regulatory relationships using DiffCorr. Detects gained, lost, and reversed gene-gene correlations between conditions. Use when comparing co-expression networks between disease vs control, treatment conditions, or developmental stages.
    7 repo stars
  5. ▌
    Forecasting Time Series Data · tools-only bundle
    Process this skill enables AI assistant to forecast future values based on historical time series data. it analyzes time-dependent data to identify trends, seasonality, and other patterns. use this skill when the user asks to predict future values of a time ser... Use when appropriate context detected. Trigger with relevant phrases based on skill purpose.
    7 repo stars
  6. ▌
    Bio Flow Cytometry Compensation Transformation · tools-only bundle
    Spillover compensation and data transformation for flow cytometry. Covers compensation matrix calculation, application, and biexponential/arcsinh transforms. Use when correcting spectral overlap between fluorophores or transforming data for analysis.
    7 repo stars
  7. ▌
    Annotating Task Lineage · tools-only bundle
    Annotate Airflow tasks with data lineage using inlets and outlets. Use when the user wants to add lineage metadata to tasks, specify input/output datasets, or enable lineage tracking for operators without built-in OpenLineage extraction.
    7 repo stars
  8. ▌
    Eval UI UX · tools-only bundle
    Specialized UI/UX evaluator for the Evaluate-Loop. Use this for evaluating UI shell tracks, design system tracks, screen implementation tracks, or any track where the primary deliverable is visual/interactive UI. Checks design system adherence, visual consistency, layout structure, responsive behavior, component states, animations, accessibility baseline, and usability check (copy quality). Dispatched by loop-execution-evaluator when track type is 'ui', 'design-system', or 'screens'. Triggered by: 'evaluate UI', 'UI review', 'design review', 'visual audit'.
    7 repo stars
  9. ▌
    Bio Workflows Timecourse Pipeline · tools-only bundle
    End-to-end time-course analysis from expression matrix to temporal patterns and enrichment. Covers temporal DE, Mfuzz soft clustering, optional rhythm detection, GAM trajectory fitting, and per-cluster pathway enrichment. Use when analyzing bulk time-series expression experiments from any omics platform.
    7 repo stars
  10. ▌
    Bio Admet Prediction · tools-only bundle
    Predicts ADMET properties using ADMETlab 3.0 API or DeepChem models. Estimates bioavailability, CYP inhibition, hERG liability, and 119 toxicity endpoints with uncertainty quantification. Filters for PAINS and other structural alerts. Use when filtering compounds for drug-likeness or prioritizing leads by predicted safety.
    7 repo stars
  11. ▌
    Microsim Generator · tools-only bundle
    Creates interactive educational MicroSims using the best-matched JavaScript library (p5.js, Chart.js, Plotly, Mermaid, vis-network, vis-timeline, Leaflet, Venn.js). Analyzes user requirements to route to the appropriate visualization type and generates complete MicroSim packages with HTML, JavaScript, CSS, documentation, screen capture, and metadata.
    7 repo stars
  12. ▌
    Audit Skill Lifecycle · tools-only bundle
    Audit skill lifecycle by tracing call chains, detecting circular dependencies, finding instruction contradictions, identifying duplicated datasets, analyzing bidirectional coherence, discovering scriptable sequences, and learning patterns. Use when checking skill coherence, validating skill workflow, finding semantic gaps in plugin structure, or auditing plugin before marketplace submission. Generates audit reports to .claude/audits/ with findings by dimension.
    7 repo stars
  13. ▌
    Bio Sra Data · tools-only bundle
    Download sequencing data from NCBI SRA using the SRA toolkit. Use when downloading FASTQ files from SRA accessions, prefetching large datasets, or validating SRA downloads.
    7 repo stars
  14. ▌
    Github Readme Generator · tools-only bundle
    Generate professional GitHub project README.md with standard structure including project intro, features, installation, usage, documentation, FAQ, contact info, donation, statistics, roadmap, and license. Auto-detects project type and tech stack.
    7 repo stars
  15. ▌
    Bio Metabolomics Lipidomics · tools-only bundle
    Specialized lipidomics analysis for lipid identification, quantification, and pathway interpretation. Covers LC-MS lipidomics with LipidSearch, MS-DIAL, and LipidMaps annotation. Use when analyzing lipid classes, chain composition, or lipid-specific pathways.
    7 repo stars
  16. ▌
    Bio Seq Objects · tools-only bundle
    Create and manipulate Seq, MutableSeq, and SeqRecord objects using Biopython. Use when creating sequences from strings, modifying sequence data in-place, or building annotated sequence records.
    7 repo stars
  17. ▌
    Bio Spatial Transcriptomics Spatial Statistics · tools-only bundle
    Compute spatial statistics for spatial transcriptomics data using Squidpy. Calculate Moran's I, Geary's C, spatial autocorrelation, co-occurrence analysis, and neighborhood enrichment. Use when computing spatial autocorrelation or co-occurrence statistics.
    7 repo stars
  18. ▌
    Bio Epitranscriptomics M6anet Analysis · tools-only bundle
    Detect m6A modifications from Oxford Nanopore direct RNA sequencing using m6Anet. Use when analyzing epitranscriptomic modifications from long-read RNA data without immunoprecipitation.
    7 repo stars
  19. ▌
    Bio Data Visualization Genome Browser Tracks · tools-only bundle
    Generate genome browser visualizations using pyGenomeTracks or IGV batch scripting for publication figures. Use when creating publication figures of genomic regions with multiple data tracks.
    7 repo stars
  20. ▌
    Explainer Visuals · tools-only bundle
    Create high-quality animated explainer visuals for essays and blog posts. Use when the user wants to visualize concepts, processes, data, or ideas with interactive web animations. Triggers on requests like "create a visual for", "animate this concept", "make an explainer", "visualize this idea", "diagram this process", "show this data", or when essay content would benefit from visual explanation. Handles abstract concepts (mental models, frameworks), technical processes (algorithms, systems), and data visualization (trends, comparisons). Outputs self-contained HTML/CSS/JS that embeds directly in web content.
    7 repo stars
  21. ▌
    Golf Data · tools-only bundle
    PGA Tour, LPGA, and DP World Tour golf data via ESPN public endpoints — tournament leaderboards, scorecards, season schedules, golfer profiles/overviews, and news. Zero config, no API keys. Use when: user asks about golf scores, tournament leaderboards, scorecards, PGA Tour schedule, golfer profiles, golfer season stats, LPGA results, or golf news. Don't use when: user asks about other sports.
    7 repo stars
  22. ▌
    SEO Checklist · tools-only bundle
    SEO first principles for PolicyEngine web applications - meta tags, crawlability, performance, and dual-mode (standalone + iframe) considerations
    7 repo stars
  23. ▌
    Markdown Exporter · tools-only bundle
    Convert Markdown text to DOCX, PPTX, XLSX, PDF, PNG, HTML, IPYNB, MD, CSV, JSON, JSONL, XML files, and extract code blocks in Markdown to Python, Bash,JS and etc files. Also known as the md_exporter skill.
    7 repo stars
  24. ▌
    Unit Price Database Manager · tools-only bundle
    Manage construction unit price databases: update prices, track vendors, apply location factors, maintain historical records. Essential for accurate estimating.
    7 repo stars
  25. ▌
    Bio Imaging Mass Cytometry Cell Segmentation · tools-only bundle
    Cell segmentation from multiplexed tissue images. Covers deep learning (Cellpose, Mesmer) and classical approaches for nuclear and whole-cell segmentation. Use when extracting single-cell data from IMC or MIBI images after preprocessing.
    7 repo stars
  26. ▌
    Bio Workflows Crispr Editing Pipeline · tools-only bundle
    End-to-end CRISPR experiment design from target selection to delivery-ready constructs. Covers guide RNA design, off-target assessment, and specialized editing strategies including knockouts, base editing, and HDR knockins. Use when designing complete CRISPR editing experiments for gene knockout, correction, or tagging.
    7 repo stars
  27. ▌
    Watchos Design Guidelines · tools-only bundle
    Apple Human Interface Guidelines for Apple Watch. Use when building watchOS apps, complications, or workout features. Triggers on tasks involving Watch UI, Digital Crown, glanceable interfaces, or wrist-based interactions.
    7 repo stars
  28. ▌
    Policyengine Python Client · tools-only bundle
    ONLY use this skill when users explicitly ask about the PolicyEngine Python package installation, REST API endpoints, API authentication, rate limits, or policyengine.py client library. DO NOT use for household benefit/tax calculations — ALWAYS use policyengine-us or policyengine-uk instead. This skill is about the API/client tooling itself, not about calculating benefits or taxes.
    7 repo stars
  29. ▌
    CSV Handler · tools-only bundle
    Handle CSV files from construction software exports. Auto-detect delimiters, encodings, and clean messy data.
    7 repo stars
  30. ▌
    Bio Imaging Mass Cytometry Quality Metrics · tools-only bundle
    Quality metrics for IMC data including signal-to-noise, channel correlation, tissue integrity, and acquisition QC. Use when assessing data quality before analysis or troubleshooting problematic acquisitions.
    7 repo stars
  31. ▌
    Bio Spatial Transcriptomics Spatial Domains · tools-only bundle
    Identify spatial domains and tissue regions in spatial transcriptomics data using Squidpy and Scanpy. Cluster spots considering both expression and spatial context to define anatomical regions. Use when identifying tissue domains or spatial regions.
    7 repo stars
  32. ▌
    Ifc Data Extraction · tools-only bundle
    Extract structured data from IFC (Industry Foundation Classes) files using IfcOpenShell. Parse BIM models, extract quantities, properties, spatial relationships, and export to various formats.
    7 repo stars
  33. ▌
    Bio Atac Seq Nucleosome Positioning · tools-only bundle
    Extract nucleosome positions from ATAC-seq data using NucleoATAC, ATACseqQC, and fragment analysis. Use when analyzing chromatin organization, identifying nucleosome-free regions at promoters, or characterizing nucleosome occupancy patterns from ATAC-seq fragment size distributions.
    7 repo stars
  34. ▌
    Langchain Incident Runbook · tools-only bundle
    Incident response procedures for LangChain production issues. Use when responding to production incidents, diagnosing outages, or implementing emergency procedures for LLM applications. Trigger with phrases like "langchain incident", "langchain outage", "langchain production issue", "langchain emergency", "langchain down".
    7 repo stars
  35. ▌
    Bio Rna Quantification Count Matrix Qc · tools-only bundle
    Quality control and exploration of RNA-seq count matrices before differential expression. Check for outliers, batch effects, and sample relationships. Use when assessing count matrix quality before DE analysis.
    7 repo stars
  36. ▌
    Graphrag Query · tools-only bundle
    Answer questions using internal documents and enterprise knowledge via GraphRAG.
    7 repo stars
  37. ▌
    Bio Rna Structure Secondary Structure Prediction · tools-only bundle
    Predicts RNA secondary structures using minimum free energy folding and partition function analysis with ViennaRNA (RNAfold, RNAalifold, RNAcofold). Computes base-pair probabilities, centroid structures, and consensus structures from alignments. Use when predicting RNA folding, evaluating structural stability, or comparing structures across homologs.
    7 repo stars
  38. ▌
    Tlaplus Model Reduction · tools-only bundle
    Automatically simplify and minimize TLA+ specifications by reducing redundant state variables, merging equivalent actions, and minimizing invariants while preserving specified properties. Use when working with TLA+ specifications that need optimization, simplification, or reduction. Triggers when users ask to minimize, reduce, simplify, or optimize TLA+ specs, or when they want to remove redundancy from formal specifications while maintaining semantic equivalence.
    7 repo stars
  39. ▌
    React PDF · tools-only bundle
    Generates PDF documents using the React-PDF library (@react-pdf/renderer) with TypeScript and JSX. Use when creating PDFs, generating reports, invoices, forms, resumes, or any document that needs flexbox layout, SVG graphics, custom fonts, or professional typesetting. Prefer over Python PDF libraries (ReportLab, fpdf2) when layout complexity matters.
    7 repo stars
  40. ▌
    React Flow Implementation · tools-only bundle
    Implements React Flow node-based UIs correctly using @xyflow/react. Use when building flow charts, diagrams, visual editors, or node-based applications with React. Covers nodes, edges, handles, custom components, state management, and viewport control.
    7 repo stars
  41. ▌
    LLM Data Automation · tools-only bundle
    Automate construction data processing using LLM (ChatGPT, Claude, LLaMA). Generate Python/Pandas scripts, extract data from documents, and create automated pipelines without deep programming knowledge.
    7 repo stars
  42. ▌
    Tiling Tree · tools-only bundle
    Exhaustive problem space exploration using the MIT Synthetic Neurobiology "tiling tree" method. Partitions a problem into MECE (Mutually Exclusive, Collectively Exhaustive) subsets recursively via parallel subagents, then evaluates leaf ideas against specified criteria. Use when users say "tiling tree", "tile the solution space", "exhaustively explore approaches to", "what are all the ways to", or request a MECE breakdown of a problem. Requires orchestrating-agents skill.
    7 repo stars
  43. ▌
    Nav Profile · tools-only bundle
    Manage user preferences and corrections for bilateral modeling. Auto-learns from session corrections. Use when user says "save my preferences", "remember I like...", or auto-triggers after corrections.
    7 repo stars
  44. ▌
    Open Data Integrator · tools-only bundle
    Integrate open construction datasets. Combine open data sources for enhanced analysis
    7 repo stars
  45. ▌
    Publish X Article · tools-only bundle
    Publish Markdown articles to X (Twitter) Articles editor with proper formatting. Use when user wants to publish a Markdown file/URL to X Articles, or mentions "publish to X", "post article to Twitter", "X article", or wants help with X Premium article publishing. Handles cover image upload, converts Markdown to rich text, and automatically converts unsupported elements (tables, mermaid diagrams, deep headers) to images.
    7 repo stars
  46. ▌
    Mteb Retrieve · tools-only bundle
    Guidance for text embedding retrieval tasks using sentence transformers or similar embedding models. This skill should be used when the task involves loading documents, encoding text with embedding models, computing similarity scores (cosine similarity), and retrieving/ranking documents based on semantic similarity to a query. Applies to MTEB benchmark tasks, document retrieval, semantic search, and text similarity ranking.
    7 repo stars
  47. ▌
    Bio Reporting Figure Export · tools-only bundle
    Exports publication-ready figures in various formats with proper resolution, sizing, and typography. Use when preparing figures for journal submission, creating vector graphics for presentations, or ensuring consistent figure styling across analyses.
    7 repo stars
  48. ▌
    Excel Report Generator · tools-only bundle
    Automatically generate Excel reports from data sources including CSV, databases, or Python data structures. Supports data analysis reports, business reports, data export, and template-based report generation using pandas and openpyxl. Activate when users mention Excel, spreadsheet, report generation, data export, or business reporting.
    7 repo stars
  49. ▌
    Linear Core Workflow B · tools-only bundle
    Project and cycle management workflows with Linear. Use when implementing sprint planning, managing projects and roadmaps, or organizing work into cycles. Trigger with phrases like "linear project", "linear cycle", "linear sprint", "linear roadmap", "linear planning", "organize linear work".
    7 repo stars
  50. ▌
    Bio Clinical Databases Polygenic Risk · tools-only bundle
    Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics. Use when predicting disease risk from genome-wide genetic variants.
    7 repo stars
  51. ▌
    Dasel Reference · tools-only bundle
    Use when querying, modifying, or converting JSON, YAML, TOML, XML, CSV, HCL, or INI with dasel v3. Complete reference for selectors, functions, conditionals, variables, spread operator, type casting, and format-specific patterns.
    7 repo stars
  52. ▌
    Spring Mvc To Boot Migrator · tools-only bundle
    Automatically migrate Spring MVC applications to Spring Boot. Use when you need to modernize a Spring MVC project to Spring Boot while preserving functionality. The skill analyzes the codebase, updates build configuration (Maven/Gradle), migrates annotations, converts XML configuration to Java/properties, updates controllers and tests, and creates the Spring Boot main application class. Creates git commits for each migration phase and generates a comprehensive summary. Supports both Maven and Gradle projects.
    7 repo stars
  53. ▌
    Bio Epidemiological Genomics Variant Surveillance · tools-only bundle
    Assign pathogen lineages and track variants using Nextclade and pangolin for viral surveillance. Monitor variant prevalence and identify emerging variants of concern. Use when classifying viral sequences, tracking lineage dynamics, or monitoring for variants of concern.
    7 repo stars
  54. ▌
    Bio Crispr Screens Jacks Analysis · tools-only bundle
    JACKS (Joint Analysis of CRISPR/Cas9 Knockout Screens) for modeling sgRNA efficacy and gene essentiality. Use when analyzing multiple CRISPR screens simultaneously or when accounting for variable sgRNA efficiency across experiments.
    7 repo stars
  55. ▌
    Bio Data Visualization Genome Tracks · tools-only bundle
    Create genome browser-style visualizations showing multiple data tracks (coverage, peaks, genes) using pyGenomeTracks, Gviz, and IGV. Use when visualizing genomic data at specific loci with multiple aligned tracks.
    7 repo stars
  56. ▌
    Bio Workflows Imc Pipeline · tools-only bundle
    End-to-end imaging mass cytometry workflow from raw acquisitions to spatial cell analysis. Orchestrates image preprocessing, segmentation, phenotyping, and spatial statistics. Use when analyzing imaging mass cytometry data end-to-end.
    7 repo stars
  57. ▌
    Model Guided Code Repair · tools-only bundle
    Automatically repair code violations of temporal properties using model-checking counterexamples as guidance. Use when working with formal verification results, temporal logic property violations (LTL, CTL), model checking counterexamples, or when asked to repair property violations, fix counterexamples, repair temporal properties, fix model checking violations, or repair code based on counterexamples. Applicable to concurrent systems, state machines, synchronization issues, safety/liveness properties, and resource management violations.
    7 repo stars
  58. ▌
    Bio Experimental Design Batch Design · tools-only bundle
    Designs experiments to minimize and account for batch effects using balanced layouts and blocking strategies. Use when planning multi-batch experiments, assigning samples to sequencing lanes, or designing studies where technical variation could confound biological signals.
    7 repo stars
  59. ▌
    Circuit Fibsqrt · tools-only bundle
    Guide for implementing combinational/sequential logic circuits using gate-level descriptions in text-based simulators. This skill applies when building circuits for mathematical functions like integer square root, Fibonacci sequences, or similar computations that require both combinational logic (arithmetic operations) and sequential logic (feedback loops, state machines). Use this skill when the task involves generating gate netlists, implementing multi-bit arithmetic circuits, or debugging event-driven circuit simulators.
    7 repo stars
  60. ▌
    Kotlin Specialist · tools-only bundle
    Use when building Kotlin applications requiring coroutines, multiplatform development, or Android with Compose. Invoke for Flow API, KMP projects, Ktor servers, DSL design, sealed classes.
    7 repo stars
  61. ▌
    Juicebox Common Errors · tools-only bundle
    Diagnose and fix Juicebox common errors. Use when encountering API errors, debugging integration issues, or troubleshooting Juicebox connection problems. Trigger with phrases like "juicebox error", "fix juicebox issue", "juicebox not working", "debug juicebox".
    7 repo stars
  62. ▌
    Vector Search · tools-only bundle
    Implement semantic vector search for construction data. Build AI-powered search using embeddings and vector databases (Qdrant, ChromaDB) for intelligent querying of specifications, standards, and project documents.
    7 repo stars
  63. ▌
    Design Pattern Suggestor · tools-only bundle
    Recommends appropriate software design patterns based on problem descriptions, requirements, or code scenarios. Use when designing software architecture, refactoring code, solving common design problems, or choosing between design approaches. Analyzes the problem context and suggests suitable creational, structural, behavioral, architectural, or concurrency patterns with implementation guidance and trade-off analysis.
    7 repo stars
  64. ▌
    Cursor Multi Repo · tools-only bundle
    Manage work with multiple repositories in Cursor. Triggers on "cursor multi repo", "cursor multiple projects", "cursor monorepo", "cursor workspace". Use when working with cursor multi repo functionality. Trigger with phrases like "cursor multi repo", "cursor repo", "cursor".
    7 repo stars
  65. ▌
    Azure AI Openai Dotnet · tools-only bundle
    Azure OpenAI SDK for .NET. Client library for Azure OpenAI and OpenAI services. Use for chat completions, embeddings, image generation, audio transcription, and assistants. Triggers: "Azure OpenAI", "AzureOpenAIClient", "ChatClient", "chat completions .NET", "GPT-4", "embeddings", "DALL-E", "Whisper", "OpenAI .NET".
    7 repo stars
  66. ▌
    Gamma Sdk Patterns · tools-only bundle
    Learn idiomatic Gamma SDK patterns and best practices. Use when implementing complex presentation workflows, handling async operations, or structuring Gamma code. Trigger with phrases like "gamma patterns", "gamma best practices", "gamma SDK usage", "gamma async", "gamma code structure".
    7 repo stars
  67. ▌
    Bio Phasing Imputation Genotype Imputation · tools-only bundle
    Impute missing genotypes using reference panels with Beagle or Minimac4. Use when increasing variant density for GWAS, harmonizing data across genotyping platforms, or inferring variants not directly typed in array data.
    7 repo stars
  68. ▌
    Better Auth · tools-only bundle
    Provides Better Auth authentication integration patterns for NestJS backend and Next.js frontend with Drizzle ORM and PostgreSQL. Use when implementing authentication - Setting up Better Auth with NestJS backend, Integrating Next.js App Router frontend, Configuring Drizzle ORM schema with PostgreSQL, Implementing social login (GitHub, Google, etc.), Adding plugins (2FA, Organization, SSO, Magic Link, Passkey), Email/password authentication with session management, Creating protected routes and middleware
    7 repo stars
  69. ▌
    Writing Claude Md Files · tools-only bundle
    Use when creating or updating CLAUDE.md files for projects or subdirectories - covers top-level vs domain-level organization, capturing architectural intent and contracts, and mandatory freshness dates
    7 repo stars
  70. ▌
    Describe Design · tools-only bundle
    Research a codebase and create architectural documentation describing how features or systems work. Use when the user asks to: (1) Document how a feature works, (2) Create an architecture overview, (3) Explain code structure for onboarding or knowledge transfer, (4) Research and describe a system's design. Produces markdown documents with Mermaid diagrams and stable code references suitable for humans and AI agents.
    7 repo stars
  71. ▌
    Bio Systems Biology Gene Essentiality · tools-only bundle
    Perform in silico gene knockout analysis and synthetic lethality screens using COBRApy single and double deletions. Predict essential genes and identify synthetic lethal pairs for drug target discovery. Use when identifying essential genes or finding synthetic lethal drug targets.
    7 repo stars
  72. ▌
    Commitlint · tools-only bundle
    When setting up commit message validation for a project. When project has commitlint.config.js or .commitlintrc files. When configuring CI/CD to enforce commit format. When extracting commit rules for LLM prompt generation. When debugging commit message rejection errors.
    7 repo stars
  73. ▌
    Reference Docs · tools-only bundle
    Reference documentation patterns for API and symbol documentation. Use when writing reference docs, API docs, parameter tables, or technical specifications. Triggers on reference docs, API reference, function reference, parameters table, symbol documentation.
    7 repo stars
  74. ▌
    Bio Hi C Analysis Hic Differential · tools-only bundle
    Compare Hi-C contact matrices between conditions to identify differential chromatin interactions. Compute log2 fold changes, statistical significance, and visualize differential contact maps. Use when comparing Hi-C contacts between conditions.
    7 repo stars
  75. ▌
    Vastai Enterprise Rbac · tools-only bundle
    Configure Vast.ai enterprise SSO, role-based access control, and organization management. Use when implementing SSO integration, configuring role-based permissions, or setting up organization-level controls for Vast.ai. Trigger with phrases like "vastai SSO", "vastai RBAC", "vastai enterprise", "vastai roles", "vastai permissions", "vastai SAML".
    7 repo stars
  76. ▌
    Clay Observability · tools-only bundle
    Set up comprehensive observability for Clay integrations with metrics, traces, and alerts. Use when implementing monitoring for Clay operations, setting up dashboards, or configuring alerting for Clay integration health. Trigger with phrases like "clay monitoring", "clay metrics", "clay observability", "monitor clay", "clay alerts", "clay tracing".
    7 repo stars
  77. ▌
    Azure Usage · tools-only bundle
    This skill should be used when user asks to "query Azure resources", "list storage accounts", "manage Key Vault secrets", "work with Cosmos DB", "check AKS clusters", "use Azure MCP", or interact with any Azure service.
    7 repo stars
  78. ▌
    Bio Rna Structure Ncrna Search · tools-only bundle
    Searches for non-coding RNA homologs and classifies RNA families using Infernal covariance model searches against the Rfam database. Identifies structured RNAs by sequence and secondary structure conservation. Use when querying sequences against Rfam, building custom covariance models for novel RNA families, or classifying non-coding transcripts by family.
    7 repo stars
  79. ▌
    Openrouter Function Calling · tools-only bundle
    Implement function/tool calling with OpenRouter models. Use when building agents or structured outputs. Trigger with phrases like 'openrouter functions', 'openrouter tools', 'openrouter agent', 'function calling'.
    7 repo stars
  80. ▌
    Playwright Patterns · tools-only bundle
    Use when writing Playwright automation code, building web scrapers, or creating E2E tests - provides best practices for selector strategies, waiting patterns, and robust automation that minimizes flakiness
    7 repo stars
  81. ▌
    Bio Workflows Neoantigen Pipeline · tools-only bundle
    End-to-end neoantigen discovery from somatic variants to ranked vaccine candidates. Integrates HLA typing, MHC binding prediction, pVACtools neoantigen calling, and immunogenicity scoring. Use when identifying tumor neoantigens for personalized vaccine design or checkpoint biomarkers.
    7 repo stars
  82. ▌
    Cwicr Waste Calculator · tools-only bundle
    Calculate material waste factors and losses using CWICR norms. Apply waste percentages, cutting losses, and spillage factors to material quantities.
    7 repo stars
  83. ▌
    Estimate Builder · tools-only bundle
    Build construction project estimates. Generate detailed cost breakdowns with labor, materials, equipment, and overhead.
    7 repo stars
  84. ▌
    Nav Loop · tools-only bundle
    Run tasks until complete with structured completion signals. Auto-invoke when user says "run until done", "keep going until complete", "iterate until finished", "loop mode", "autonomous mode".
    7 repo stars
  85. ▌
    Systematic Debugging · tools-only bundle
    Use when encountering any bug, test failure, or unexpected behavior, before proposing fixes
    7 repo stars
  86. ▌
    Cursor Skill Creator · tools-only bundle
    Creates Cursor-specific AI agent skills with SKILL.md format. Use when creating skills for Cursor editor specifically, following Cursor's patterns and directories (.cursor/skills/). Triggers on "cursor skill", "create cursor skill".
    7 repo stars
  87. ▌
    Ideogram Sdk Patterns · tools-only bundle
    Apply production-ready Ideogram SDK patterns for TypeScript and Python. Use when implementing Ideogram integrations, refactoring SDK usage, or establishing team coding standards for Ideogram. Trigger with phrases like "ideogram SDK patterns", "ideogram best practices", "ideogram code patterns", "idiomatic ideogram".
    7 repo stars
  88. ▌
    Bio Temporal Genomics Trajectory Modeling · tools-only bundle
    Models continuous temporal trajectories from bulk or time-resolved omics data using generalized additive models (mgcv), spline regression, and changepoint detection (segmented, ruptures). Fits smooth gene expression curves and tests trajectory differences between conditions. Use when fitting non-linear temporal models to bulk time-series data or comparing developmental trajectories across conditions. Not for single-cell pseudotime (see single-cell/trajectory-inference).
    7 repo stars
  89. ▌
    Coderabbit Enterprise Rbac · tools-only bundle
    Configure CodeRabbit enterprise SSO, role-based access control, and organization management. Use when implementing SSO integration, configuring role-based permissions, or setting up organization-level controls for CodeRabbit. Trigger with phrases like "coderabbit SSO", "coderabbit RBAC", "coderabbit enterprise", "coderabbit roles", "coderabbit permissions", "coderabbit SAML".
    7 repo stars
  90. ▌
    Bio Clinical Databases Clinvar Lookup · tools-only bundle
    Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. Use when determining clinical significance of variants for diagnostic or research purposes.
    7 repo stars
  91. ▌
    Dspy Output Refinement Constraints · tools-only bundle
    This skill should be used when the user asks to "refine DSPy outputs", "enforce constraints", "use dspy.Refine", "select best output", "use dspy.BestOfN", mentions "output validation", "constraint checking", "multi-attempt generation", "reward function", or needs to improve output quality through iterative refinement or best-of-N selection with custom constraints.
    7 repo stars
  92. ▌
    Deepgram Webhooks Events · tools-only bundle
    Implement Deepgram callback and webhook handling for async transcription. Use when implementing callback URLs, processing async transcription results, or handling Deepgram event notifications. Trigger with phrases like "deepgram callback", "deepgram webhook", "async transcription deepgram", "deepgram events", "deepgram notifications".
    7 repo stars
  93. ▌
    Project Planner · tools-only bundle
    Breaks down complex projects into actionable tasks with timelines, dependencies, and milestones. Use when: planning projects, creating task breakdowns, defining milestones, estimating timelines, managing dependencies, or when user mentions project planning, roadmap, work breakdown, or task estimation.
    7 repo stars
  94. ▌
    AI Elements Chatbot · tools-only bundle
    This skill provides production-ready AI chat UI components built on shadcn/ui for conversational AI interfaces. Use when building ChatGPT-style chat interfaces with streaming responses, tool/function call displays, reasoning visualization, or source citations. Provides 30+ components including Message, Conversation, Response, CodeBlock, Reasoning, Tool, Actions, Sources optimized for Vercel AI SDK v5. Prevents common setup errors with Next.js App Router, Tailwind v4, shadcn/ui integration, AI SDK v5 migration, component composition patterns, voice input browser compatibility, responsive design issues, and streaming optimization. Keywords: ai-elements, vercel-ai-sdk, shadcn, chatbot, conversational-ai, streaming-ui, chat-interface, ai-chat, message-components, conversation-ui, tool-calling, reasoning-display, source-citations, markdown-streaming, function-calling, ai-responses, prompt-input, code-highlighting, web-preview, branch-navigation, thinking-display, perplexity-style, claude-artifacts
    7 repo stars
  95. ▌
    Server Action Builder · tools-only bundle
    Create Next.js Server Actions with Zod validation, authentication, and service layer integration for Next.js/Supabase applications. Use when implementing mutations, form submissions, or API operations that need authentication and validation ('create a server action', 'add an update action', 'wire up the form submission', 'build the delete endpoint'). Generates schema + service + action files following established patterns. Do NOT use for service layer logic (use service-builder), forms (use react-form-builder), route handlers (see patterns rule), or database schemas (use postgres-expert).
    7 repo stars
  96. ▌
    Replit Advanced Troubleshooting · tools-only bundle
    Apply Replit advanced debugging techniques for hard-to-diagnose issues. Use when standard troubleshooting fails, investigating complex race conditions, or preparing evidence bundles for Replit support escalation. Trigger with phrases like "replit hard bug", "replit mystery error", "replit impossible to debug", "difficult replit issue", "replit deep debug".
    7 repo stars
  97. ▌
    Github Wayback Recovery · tools-only bundle
    Recover deleted GitHub content using the Wayback Machine and Archive.org APIs. Use when repositories, files, issues, PRs, or wiki pages have been deleted from GitHub but may persist in web archives. Covers CDX API queries, URL patterns, and systematic recovery workflows.
    7 repo stars
  98. ▌
    Langfuse Security Basics · tools-only bundle
    Implement Langfuse security best practices for API keys and data privacy. Use when securing Langfuse integration, protecting API keys, or implementing data privacy controls for LLM observability. Trigger with phrases like "langfuse security", "langfuse API key security", "langfuse data privacy", "secure langfuse", "langfuse PII".
    7 repo stars
  99. ▌
    Juicebox Security Basics · tools-only bundle
    Apply Juicebox security best practices. Use when securing API keys, implementing access controls, or auditing Juicebox integration security. Trigger with phrases like "juicebox security", "secure juicebox", "juicebox API key security", "juicebox access control".
    7 repo stars
  100. ▌
    Openrouter Known Pitfalls · tools-only bundle
    Execute avoid common OpenRouter mistakes and anti-patterns. Use when reviewing code or onboarding developers. Trigger with phrases like 'openrouter pitfalls', 'openrouter mistakes', 'openrouter gotchas', 'openrouter common issues'.
    7 repo stars