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YuukiAS

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• 200 skills
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• 7 hours ago last updated

1. ▌
   Geopandas · yuukias bundle

   Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Supports PostGIS databases, interactive maps, and integration with matplotlib/folium/cartopy.
   0 installs
2. ▌
   Peer Review · yuukias bundle

   Reviewer-style manuscript or grant critique and acceptance-risk assessment. Use for pre-submission self-review, paper验收, likely objections, rebuttal assessment, claim-evidence audit, methods/statistics critique, reporting standards, and concern ledgers. Route prose drafting to scientific-writing and scoring to scholar-evaluation.
   0 installs
3. ▌
   MCP Builder · yuukias bundle

   Guide for creating high-quality MCP (Model Context Protocol) servers that enable LLMs to interact with external services through well-designed tools. Use when building MCP servers to integrate external APIs or services, whether in Python (FastMCP) or Node/TypeScript (MCP SDK).
   0 installs
4. ▌
   Depmap · yuukias

   Archived provider note for DepMap lookup. Use bioinformatics-database-retrieval for active project routing.
   0 installs
5. ▌
   Pytorch Lightning · yuukias bundle

   Deep learning framework (PyTorch Lightning). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard), distributed training (DDP, FSDP, DeepSpeed), for scalable neural network training.
   0 installs
6. ▌
   Stable Baselines3 · yuukias bundle

   Production-ready reinforcement learning algorithms (PPO, SAC, DQN, TD3, DDPG, A2C) with scikit-learn-like API. Use for standard RL experiments, quick prototyping, and well-documented algorithm implementations.
   0 installs
7. ▌
   Umap Learn · yuukias bundle

   UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSCAN), supervised/parametric UMAP, for high-dimensional data.
   0 installs
8. ▌
   Webapp Testing · yuukias bundle

   Toolkit for interacting with and testing local web applications using Playwright. Supports verifying frontend functionality, debugging UI behavior, capturing browser screenshots, and viewing browser logs.
   0 installs
9. ▌
   Scientific Prose · yuukias bundle

   English scientific report writing and revision pass. Use for research reports, progress reports, figure-heavy PDFs, manuscripts, rebuttals, technical summaries, and slide text that must keep evidence, uncertainty, captions, and conclusions scientifically defensible without AI-sounding or defensive/self-undermining prose.
   0 installs
10. ▌
    Writing Fidelity · yuukias bundle

    Preserve facts, corrections, labels, structure, equations, citations, version authority, and final artifact identity during writing edits. Route Chinese natural-prose passes to chinese-prose, source-faithful structural scientific/technical rewrites to scientific-rewrite, and English scientific style passes to scientific-prose.
    0 installs
11. ▌
    Pathml · yuukias bundle

    Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide formats. For simple tile extraction from H&E slides, histolab may be simpler.
    0 installs
12. ▌
    Matplotlib · yuukias bundle

    Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows.
    0 installs
13. ▌
    Pydicom · yuukias bundle

    Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Applies to tasks involving medical image analysis, PACS systems, radiology workflows, and healthcare imaging applications.
    0 installs
14. ▌
    What If Oracle · yuukias bundle

    Run structured What-If scenario analysis with multi-branch possibility exploration. Also trigger when the user faces a fork-in-the-road decision, wants to stress-test an idea, or needs to think through consequences before committing.
    0 installs
15. ▌
    Timesfm Forecasting · yuukias bundle

    Zero-shot time series forecasting with Google's TimesFM foundation model. Use for any univariate time series (sales, sensors, energy, vitals, weather) without training a custom model.
    0 installs
16. ▌
    Scikit Learn · yuukias bundle

    Machine learning in Python with scikit-learn. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.
    0 installs
17. ▌
    Visual Direction · yuukias bundle

    Choose and execute a deliberate frontend visual direction across typography, palette, structure, texture, imagery, and composition. Use when designing or restyling frontend UI and avoiding generic AI-looking output.
    0 installs
18. ▌
    D2 Diagrams · yuukias bundle

    Generate D2 source diagrams and rendered SVG/PNG outputs for architecture, infrastructure, method pipelines, system components, and codebase structure. Use when a text-based diagram DSL is preferable to manual drawing.
    0 installs
19. ▌
    Scientific Rewrite · yuukias bundle

    Source-faithful structural rewrite route for existing Chinese or Chinese-dominant scientific/technical material when users ask to reorganize it into clearer Chinese while preserving facts, numbers, formulas, citations, comparisons, conditions, limitations, paths, and exact details.
    0 installs
20. ▌
    Arxiv Database · yuukias bundle

    Search and retrieve preprints from arXiv via the Atom API. Use this skill when searching for papers in physics, mathematics, computer science, quantitative biology, quantitative finance, statistics, electrical engineering, or economics by keywords, authors, arXiv IDs, date ranges, or categories.
    0 installs
21. ▌
    Markitdown · yuukias bundle

    Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.
    0 installs
22. ▌
    Infographics · yuukias bundle

    Create professional infographics from text, data, or research using configured research, image-generation, and quality-review providers. Produces polished, source-faithful visual explanations for reports, presentations, education, and public communication.
    0 installs
23. ▌
    Research Grants · yuukias bundle

    Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.
    0 installs
24. ▌
    Venue Templates · yuukias bundle

    This skill should be used when preparing manuscripts for journal submission, conference papers, research posters, or grant proposals and need venue-specific formatting requirements and templates.
    0 installs
25. ▌
    Paper 2 Web · yuukias bundle

    This skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster).
    0 installs
26. ▌
    Pubmed Database · yuukias bundle

    Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.
    0 installs
27. ▌
    Research Lookup · yuukias bundle

    Find current research information and recent papers quickly. Use for latest papers, targeted evidence gathering, methods/protocol checks, and source-backed facts. Route systematic or related-work synthesis to literature-review, claim-support verdicts to citation-verification, and BibTeX or library cleanup to citation-management or pyzotero.
    0 installs
28. ▌
    Motion Interaction · yuukias bundle

    Design and implement frontend motion: page-load choreography, transitions, hover states, scroll effects, feedback animation, and reduced-motion behavior. Use when adding or reviewing animation and interaction polish.
    0 installs
29. ▌
    Canvas Design · yuukias bundle

    Create beautiful visual art in .png and .pdf documents using design philosophy. You should use this skill when the user asks to create a poster, piece of art, design, or other static piece. Create original visual designs, never copying existing artists' work to avoid copyright violations.
    0 installs
30. ▌
    Theme Factory · yuukias bundle

    Toolkit for styling artifacts with a theme. These artifacts can be slides, docs, reportings, HTML landing pages, etc. There are 10 pre-set themes with colors/fonts that you can apply to any artifact that has been creating, or can generate a new theme on-the-fly.
    0 installs
31. ▌
    Bioservices · yuukias

    Archived multi-provider query note. Use bioinformatics-database-retrieval for active database routing.
    0 installs
32. ▌
    Pyhealth · yuukias bundle

    Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data.
    0 installs
33. ▌
    PPTX Posters · yuukias bundle

    Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern web-based poster design with responsive layouts and easy visual integration.
    0 installs
34. ▌
    Biorxiv Database · yuukias bundle

    Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
    0 installs
35. ▌
    Parallel Web · yuukias bundle

    Web search and content extraction through Parallel Search API when this provider is requested or when research results must be saved with reproducible source files. Follow host browsing/tool instructions when they specify another search path.
    0 installs
36. ▌
    Product UX Planning · yuukias bundle

    Plan frontend products before implementation: purpose, audience, information architecture, navigation, user flows, states, content discipline, and feature scope. Use when starting a new app/page, redesigning UX, or reviewing whether a frontend experience is coherent.
    0 installs
37. ▌
    Generate Image · yuukias bundle

    Generate or edit images using configured image-generation providers. Use for photos, illustrations, artwork, visual assets, concept art, and general-purpose images; for flowcharts, circuits, pathways, and technical diagrams, use scientific-schematics instead.
    0 installs
38. ▌
    Literature Review · yuukias bundle

    Synthesize scholarly literature and create single-paper evidence cards. Use for systematic/scoping/narrative reviews, related work, paper精读, paper cards, claim-evidence extraction, method maps, thematic synthesis, and research-gap analysis. Route quick lookup, DOI/claim checks, BibTeX, and Zotero to citation skills.
    0 installs
39. ▌
    Dhdna Profiler · yuukias

    Extract cognitive patterns and thinking fingerprints from any text. Also trigger when the user provides text and wants deeper insight into the author's reasoning patterns, decision-making style, or cognitive signature.
    0 installs
40. ▌
    Ena Database · yuukias

    Archived provider note for ENA sequence lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
41. ▌
    Geo Database · yuukias

    Archived provider note for GEO dataset lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
42. ▌
    Cardiac Mri · yuukias bundle

    Use for cardiac MRI / CMR domain knowledge, cine SAX/LAX, ED/ES timing, LV/RV function, myocardial strain, tagged MRI, feature tracking, and cardiac phenotype validation independent of any single project.
    0 installs
43. ▌
    Neurokit2 · yuukias bundle

    Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals.
    0 installs
44. ▌
    Latex Posters · yuukias bundle

    Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
    0 installs
45. ▌
    Bgpt Paper Search · yuukias bundle

    Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions.
    0 installs
46. ▌
    Openalex Database · yuukias bundle

    Query and analyze scholarly literature using the OpenAlex database. Use for literature searches, research output analysis, citation analysis, and academic database queries.
    0 installs
47. ▌
    Open Notebook · yuukias bundle

    Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Supports 16+ AI providers including OpenAI, Anthropic, Google, Ollama, Groq, and Mistral with complete data privacy through self-hosting.
    0 installs
48. ▌
    Design System Tokens · yuukias bundle

    Create or refine frontend design systems: primitive, semantic, and component tokens; CSS variables; Tailwind theme config; typography scales; spacing; component states; brand consistency. Use when making reusable UI systems or aligning multiple screens.
    0 installs
49. ▌
    Figma Design To Code · yuukias bundle

    Plan Figma-to-code handoff: identify frames, tokens, assets, accessibility risks, and implementation notes that complement official Figma tooling.
    0 installs
50. ▌
    Drawio Diagrams · yuukias bundle

    Create, edit, validate, and export editable draw.io diagrams for architecture, methods, flowcharts, ER diagrams, and paper method figures. Use when the deliverable should remain editable as .drawio XML or embedded editable SVG/PDF.
    0 installs
51. ▌
    Content Generation · yuukias

    Archived legacy academic content-generation pipeline note. Do not route new writing tasks here; use paper-workflow-orchestrator, scientific-writing, peer-review, writing-fidelity, and chinese-prose for current manuscript drafting and review.
    0 installs
52. ▌
    Research Reporting · yuukias bundle

    Create repo-grounded research reports, milestone summaries, experiment reviews, technical notes, advisor/group-meeting reports, and result retrospectives from project evidence. Use for Markdown reports and internal scientific documentation, not for full journal manuscript workflows.
    0 installs
53. ▌
    Scholar Evaluation · yuukias bundle

    Quantitatively evaluate scholarly work with a fixed rubric or ScholarEval-style dimensions. Use for rubric assessment, benchmarked quality scoring, numbered ratings, and dimension-by-dimension evaluation. Route ordinary reviewer-style critique to peer-review and prose revision to scientific-writing.
    0 installs
54. ▌
    Scientific Writing · yuukias bundle

    Scientific Writing
    0 installs
55. ▌
    Gene Database · yuukias

    Archived provider note for gene lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
56. ▌
    Gtex Database · yuukias

    Archived provider note for GTEx expression lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
57. ▌
    Gwas Database · yuukias

    Archived provider note for GWAS Catalog lookup. Use bioinformatics-database-retrieval for active project routing and GWAS summary-stat database selection.
    0 installs
58. ▌
    Kegg Database · yuukias

    Archived provider note for KEGG pathway lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
59. ▌
    Brand Creative Assets · yuukias bundle

    Create and review brand-related frontend assets: brand identity, visual guidelines, banners, hero visuals, slides, social images, icons, and marketing creative. Use for branded campaigns and visual asset systems.
    0 installs
60. ▌
    Statistical Analysis · yuukias bundle

    Statistical Analysis
    0 installs
61. ▌
    Citation Management · yuukias bundle

    Manage bibliography, BibTeX, citation metadata, and reference-library hygiene. Use for DOI/PMID/arXiv-to-BibTeX conversion, metadata extraction, duplicate repair, and style formatting. Route claim support to citation-verification, literature synthesis to literature-review, paper lookup to research-lookup, and Zotero operations to pyzotero.
    0 installs
62. ▌
    Experiment Execution · yuukias bundle

    Plan, run, monitor, interpret, and reproduce computational or scientific experiments, including run setup, metric tracking, statistical interpretation, failure triage, and reproducibility checks.
    0 installs
63. ▌
    Plantuml Diagrams · yuukias bundle

    Create PlantUML source and rendered diagrams for sequence, activity, class, component, deployment, state, and C4-style architecture diagrams. Use when UML semantics are more important than freeform drawing.
    0 installs
64. ▌
    Gnomad Database · yuukias

    Archived provider note for gnomAD variant lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
65. ▌
    Jaspar Database · yuukias

    Archived provider note for JASPAR motif lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
66. ▌
    String Database · yuukias

    Archived provider note for STRING network lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
67. ▌
    Consciousness Council · yuukias bundle

    Run a multi-perspective Mind Council deliberation on any question, decision, or creative challenge. Also trigger when the user faces a dilemma, trade-off, or complex choice with no obvious answer.
    0 installs
68. ▌
    Hypothesis Generation · yuukias bundle

    Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to formulate testable hypotheses with predictions, propose mechanisms, and design experiments to test them.
    0 installs
69. ▌
    Frontend Visual Systems · yuukias bundle

    Convert frontend references and product intent into design tokens, visual direction, palette, typography, icon, layout, density, and motion rules for implementation by a frontend builder.
    0 installs
70. ▌
    Citation Verification · yuukias bundle

    Verify academic citations, references, BibTeX entries, DOI/PMID metadata, citation claims, and figure/table evidence before manuscript submission, review response, or report delivery. Use when citation existence or claim support matters more than citation formatting alone.
    0 installs
71. ▌
    Latex Paper Authoring · yuukias bundle

    Author, organize, repair, and prepare LaTeX research papers for arXiv, Overleaf, conference templates, or journal submission. Use when manuscript structure, LaTeX source hygiene, compilation, figures, bibliography, or template cleanup is central.
    0 installs
72. ▌
    Cellxgene Census · yuukias

    Archived provider note for CELLxGENE Census lookup. Use bioinformatics-database-retrieval for active project routing unless doing single-cell analysis.
    0 installs
73. ▌
    Ensembl Database · yuukias

    Archived provider note for Ensembl lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
74. ▌
    Monarch Database · yuukias

    Archived provider note for Monarch phenotype lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
75. ▌
    Uniprot Database · yuukias

    Archived provider note for UniProt protein lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
76. ▌
    Perplexity Search · yuukias bundle

    Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter.
    0 installs
77. ▌
    Excalidraw Diagrams · yuukias bundle

    Create or revise Excalidraw-style sketch diagrams for early architecture, workflow, method, and concept ideation. Use when the user wants informal hand-drawn exploration rather than publication-final figures.
    0 installs
78. ▌
    Bioinformatics Workflows · yuukias bundle

    Common bioinformatics workflows across databases, single-cell analysis, genomics I/O, and omics analysis.
    0 installs
79. ▌
    Skill Library Analysis · yuukias bundle

    Analyze, deduplicate, cluster, and select skills from a large skill library or cloned upstream sources. Use when maintaining AI_Skills_Collection, comparing external skill repos, or deciding whether to merge, add, archive, or ignore skills.
    0 installs
80. ▌
    Imagegen · yuukias bundle

    Generate or edit raster images when the task benefits from AI-created bitmap visuals such as photos, illustrations, textures, sprites, mockups, or transparent-background cutouts.
    0 installs
81. ▌
    Pysam · yuukias bundle

    Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.
    0 installs
82. ▌
    Interpro Database · yuukias

    Archived provider note for InterPro domain lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
83. ▌
    Lamindb · yuukias bundle

    This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR.
    0 installs
84. ▌
    Reactome Database · yuukias

    Archived provider note for Reactome pathway lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
85. ▌
    Research Product Frontend · yuukias bundle

    Plan high-density research product frontends such as medical imaging viewers, phenotype explorers, model comparison dashboards, provenance tools, and experiment history interfaces.
    0 installs
86. ▌
    Project Skill Installer · yuukias bundle

    Use when the user asks to install, update, or set up AI_Skills_Collection profiles for the current project. Handles project-local installation only; it does not provide domain knowledge.
    0 installs
87. ▌
    Medical Imaging Workflows · yuukias bundle

    Medical imaging workflows for CMR, DICOM/NIfTI, classical features, deep learning, and pathology imaging.
    0 installs
88. ▌
    Codex Workflow Protocol · yuukias bundle

    Use for complex or risky Codex tasks that require source-of-truth discovery, phased planning, specialist routing, gate-driven verification, live-state supervision, integration ownership, or honest final status reporting.
    0 installs
89. ▌
    Bayesian Ppl Diagnostics · yuukias bundle

    Executable guidance for Bayesian workflows using Stan/CmdStanPy, brms, PyMC, and ArviZ, with legacy JAGS/OpenBUGS paths and Rcpp acceleration patterns.
    0 installs
90. ▌
    Alphafold Database · yuukias

    Archived provider note for AlphaFold DB lookup. Use bioinformatics-database-retrieval for active project routing.
    0 installs
91. ▌
    Scanpy · yuukias bundle

    Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format questions use anndata.
    0 installs
92. ▌
    Scvelo · yuukias bundle

    RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data. Complements Scanpy/scVI-tools for trajectory inference.
    0 installs
93. ▌
    Scikit Survival · yuukias bundle

    Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival.
    0 installs
94. ▌
    Treatment Plans · yuukias bundle

    Draft concise, clinician-reviewed treatment plan documents with goals, interventions, monitoring, and follow-up. Use only as documentation support with current-source verification, not as autonomous medical advice.
    0 installs
95. ▌
    Valyu Scientific Search · yuukias bundle

    Search scientific literature and biomedical databases through Valyu-backed semantic search when available, including PubMed, arXiv, bioRxiv, medRxiv, patents, ChEMBL, DrugBank, Open Targets, FDA labels, and clinical trials.
    0 installs
96. ▌
    Scientific Brainstorming · yuukias bundle

    Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps.
    0 installs
97. ▌
    AI Skills Repository Maintainer · yuukias bundle

    Maintain AI_Skills_Collection itself, including production plugin refinement contracts, source-first changes, generated parity, replay/regression gates, versions, changelogs, registry, catalog, marketplace, and profiles. Use only when the user is working on this repository or explicitly asks to maintain the central skill collection.
    0 installs
98. ▌
    AI Ml Imaging · yuukias bundle

    AI/ML support for imaging workflows with PyTorch Lightning and Transformers.
    0 installs
99. ▌
    Frontend Reference Research · yuukias bundle

    Review external frontend references, screenshots, UI libraries, Figma Community examples, and design cases, then distill reusable patterns without copying third-party pages or unclear assets.
    0 installs
100. ▌
     Anndata · yuukias bundle

     Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
     0 installs