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zimoliao

@zimoliao source repo

47 published skills

  1. ▌
    Patent Fetch · zimoliao
    Use when the user has a patent publication number, patent URL, or patent-search result and wants the PDF fetched into the configured patent inbox.
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  2. ▌
    Draw · zimoliao
    Use when the user wants diagrams, flowcharts, architecture visuals, data relationships, timelines, concept maps, Mermaid, Graphviz, drawio, or polished paper figures generated from structured text or IR.
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  3. ▌
    Show · zimoliao
    Use when the user wants to read a paper or inspect metadata, abstract, conclusion, full text, figures, or detail levels L1 through L4.
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  4. ▌
    Arxiv · zimoliao
    Use when the user wants to browse arXiv preprints, search arXiv directly, fetch a PDF by arXiv ID or URL, or send a preprint into the ScholarAIO ingest pipeline.
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  5. ▌
    Audit · zimoliao
    Use when the user wants to check paper-library data quality, diagnose missing metadata, filename issues, DOI duplicates, title mismatches, or repairable metadata problems.
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  6. ▌
    Graph · zimoliao
    Use when the user asks about citation relationships, references, citing papers, shared references, bibliographic overlap, or graph-style paper connections.
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  7. ▌
    Index · zimoliao
    Use when the user wants to rebuild or refresh ScholarAIO keyword, full-text, FTS5, FAISS, or semantic search indexes after data or metadata changes.
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  8. ▌
    Scrub · zimoliao
    Use when incrementally reviewing and repairing low-quality metadata after enrich, especially non-standard documents that need title, author, or year correction while skipping already reviewed records via .scrubbed.
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  9. ▌
    Setup · zimoliao
    Use when the user wants to install, configure, diagnose, or troubleshoot ScholarAIO, including setup check, dependency status, API keys, and bilingual setup flow.
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  10. ▌
    Backup · zimoliao
    Use when the user wants to back up or restore ScholarAIO data through configured rsync targets, inspect backup plans, or run a dry-run before transferring files.
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  11. ▌
    Enrich · zimoliao
    Use when the user wants LLM-based metadata enrichment, table-of-contents extraction, L3 conclusion extraction, or abstract backfilling for library papers.
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  12. ▌
    Export · zimoliao
    Use when the user needs BibTeX, RIS, Markdown reference lists, filtered citation exports, custom citation styles, or a Markdown-to-DOCX export for sharing.
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  13. ▌
    Import · zimoliao
    Use when the user wants to import papers from Endnote XML/RIS, Zotero Web API or local SQLite, attach PDFs, match PDFs to records, or supplement records with PDF content.
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  14. ▌
    Ingest · zimoliao
    Use when the user wants to process new papers, patents, theses, documents, or proceedings from inbox queues into the knowledge base, run the ingest pipeline, or rebuild indexes.
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  15. ▌
    Lammps · zimoliao
    Use when working on classical materials simulations with LAMMPS, including potential selection, shock or deformation setups, thermodynamic runs, or structure analysis for solids and nanomaterials.
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  16. ▌
    Poster · zimoliao
    Use when the user needs an academic poster, conference poster, poster-style visual summary, section planning, figure-text balance, or poster packaging workflow.
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  17. ▌
    Rename · zimoliao
    Use when the user wants to normalize paper directory names to Author-Year-Title format after metadata correction or audit cleanup.
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  18. ▌
    Search · zimoliao
    Use when the user wants to find academic papers, search the local library, run keyword or semantic search, search by author, explore topics, or federate across library, explore databases, and arXiv.
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  19. ▌
    Topics · zimoliao
    Use when the user asks about research themes, topic distribution, BERTopic clustering, topic overview, topic papers, topic merges, or HTML topic visualizations.
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  20. ▌
    Explore · zimoliao
    Use when the user wants to survey a journal or field, fetch papers from OpenAlex, cluster topics, build exploration embeddings, or search named explore libraries under data/libraries/explore.
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  21. ▌
    Gromacs · zimoliao
    Use when working on biomolecular molecular dynamics with GROMACS, including system setup, equilibration, production runs, trajectory analysis, or MM/PBSA-style post-processing.
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  22. ▌
    Metrics · zimoliao
    Use when the user asks about LLM token usage, API call timing, runtime metrics, cost signals, or performance statistics.
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  23. ▌
    Publish · zimoliao
    Use when the user says a paper, review, report, or LaTeX deliverable is final and wants it archived under published/ or exposed through the static published-paper site.
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  24. ▌
    Document · zimoliao bundle
    Use when the user wants to create or inspect DOCX, PPTX, or XLSX files, generate a downloadable Office deliverable, or verify its structure and layout warnings with scholaraio document inspect.
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  25. ▌
    Insights · zimoliao
    Use when the user wants to analyze research behavior, search hot keywords, most-read papers, reading trends, active workspaces, or unread semantic neighbors.
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  26. ▌
    Openfoam · zimoliao
    Use when working on CFD cases with OpenFOAM, including solver selection, dictionary setup, mesh workflows, turbulence models, or flow and heat-transfer verification.
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  27. ▌
    Citations · zimoliao
    Use when the user asks about highly cited papers, citation rankings, or updating citation counts from external APIs.
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  28. ▌
    Paper2any · zimoliao
    Use when the user explicitly requests Paper2Any or a Paper2Any benchmark for paper-to-figure, PPT, poster, video, DrawIO, PDF-to-PPT, or related workflows through the isolated ScholarAIO sidecar.
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  29. ▌
    Translate · zimoliao
    Use when the user wants to translate paper markdown, full papers, or batches into another language while preserving formulas, code blocks, and images.
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  30. ▌
    Workspace · zimoliao
    Use when the user wants to organize paper subsets, create workspaces, add or remove papers, search within a workspace, manage refs/papers.json, or export workspace BibTeX.
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  31. ▌
    Webextract · zimoliao
    Use when a URL or online PDF needs ingestion-ready rendered content, or when host-native URL reading failed because JavaScript/PDF rendering is required; only use it for those cases, not routine web discovery or reading.
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  32. ▌
    Ingest Link · zimoliao
    Use when the user wants to ingest web URLs, online PDFs, rendered web pages, standards, manuals, or articles through qt-web-extractor into the normal document-ingest workflow.
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  33. ▌
    Research Gap · zimoliao
    Use when the user wants to identify research gaps, open questions, unexplored areas, cross-paper limitations, or future directions from workspace literature.
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  34. ▌
    Paper Writing · zimoliao
    Use when the user wants help drafting or revising a research paper section, including Introduction, Related Work, Method, Results, Discussion, or Conclusion.
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  35. ▌
    Patent Search · zimoliao
    Use when the user wants USPTO patent discovery, patent metadata lookup, application lookup, or downloadable patent candidates before ingest.
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  36. ▌
    Bioinformatics · zimoliao
    Use when working on bioinformatics workflows such as alignment, variant calling, phylogenetics, or protein-structure analysis, especially across BLAST, minimap2, samtools, bcftools, MAFFT, IQ-TREE, or ESMFold.
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  37. ▌
    Citation Check · zimoliao
    Use when the user wants to verify citations in AI-generated or human-written text against the local knowledge base and catch hallucinated, wrong, or missing references.
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  38. ▌
    Writing Polish · zimoliao
    Use when the user wants to polish academic prose, remove AI-generated patterns, improve clarity, or adapt English or Chinese writing to a target style or journal.
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  39. ▌
    Nature Workflow · zimoliao bundle
    Use when the user explicitly asks for Nature Skills, nature-skills, Nature style, Nature-style, Nature Communications, Nature-family, CNS, high-impact journal, or Springer Nature workflows, including Nature figure work, polishing, writing, reviewer critique, high-impact journal major revision response, Nature/CNS citations, Nature data-sharing workflows, paper readers, reviewer response, paper-to-PPT, submission checklist, or Nature-specific academic-search workflows.
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  40. ▌
    Review Response · zimoliao
    Use when the user receives peer review comments and wants a rebuttal, response letter, point-by-point reply, or evidence-backed revision response.
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  41. ▌
    Academic Writing · zimoliao
    Use when the user needs help choosing or organizing an academic-writing workflow by deliverable, stage, or format, including review articles, guided reading, paper sections, PPT or slides, posters, and technical reports.
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  42. ▌
    Quantum Espresso · zimoliao
    Use when working on first-principles materials calculations with Quantum ESPRESSO, including SCF, band structures, DOS, phonons, electron-phonon coupling, Fermi surfaces, or charge density.
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  43. ▌
    Technical Report · zimoliao
    Use when the user wants a technical report, topic report, research briefing, structured investigation, evidence synthesis, recommendations, or final report packaging.
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  44. ▌
    Literature Review · zimoliao
    Use when the user wants to draft a literature review, survey a research area, summarize a field, organize workspace papers, identify gaps, or export review references.
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  45. ▌
    Scientific Runtime · zimoliao
    Use when serving scientific CLI tasks through ScholarAIO, especially when the agent should prefer scholaraio toolref, handle partial coverage safely, or avoid turning user work into documentation maintenance.
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  46. ▌
    Paper Guided Reading · zimoliao
    Use when the user wants guided reading, deep reading, or structured analysis of a single paper, starting from fuzzy keywords or a research question.
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  47. ▌
    Scientific Tool Onboarding · zimoliao
    Use when evaluating, adding, or upgrading ScholarAIO support for a scientific computing tool, especially integration-gate review, official docs ingestion, toolref integration, lightweight skill design, and end-to-end CLI verification.
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