Coding & Dev Tools Agent Skills

Coding agent skills teach AI agents repeatable engineering workflows: reviewing pull requests, writing tests, refactoring safely, and enforcing house style. Install one SKILL.md and your agent applies the same checklist every time, whether you use Claude Code, Cursor, Codex, or another agent.

Coding & Dev Tools

9,777 skills
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Iep Template
Create IEP templates for individualized education. TRIGGERS - Use when user needs help with iep-template related tasks.
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JWT Strategy
Design JWT strategies with refresh tokens. TRIGGERS - Use when user needs help with jwt-strategy related tasks.
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Leave Policy
Write leave policies covering PTO, sick, and family leave. TRIGGERS - Use when user needs help with leave-policy related tasks.
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Op Ed Writer
Write op-ed pieces with arguments. TRIGGERS - Use when user needs help with op-ed-writer related tasks.
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Personal Crm
Design personal CRM systems for networking. TRIGGERS - Use when user needs help with personal-crm related tasks.
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Pip Template
Create performance improvement plan templates. TRIGGERS - Use when user needs help with pip-template related tasks.
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Pulse Survey
Design pulse surveys for rapid employee feedback. TRIGGERS - Use when user needs help with pulse-survey related tasks.
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Quiz Builder
Build quizzes with question types and scoring. TRIGGERS - Use when user needs help with quiz-builder related tasks.
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Reading Plan
Design reading plans with retention strategies. TRIGGERS - Use when user needs help with reading-plan related tasks.
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Bwa
Use when aligning low-divergence DNA sequence reads to a reference genome
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B2ct
Use when converting ViennaRNA-style sequence-plus-dot-bracket records on stdin into RNA connectivity-table output.
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Evo2
Use when working from the local Evo 2 repository for DNA-sequence scoring, embeddings, generation, or phage-genome design experiments.
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Bgzip
Use when you need to compress or decompress files using BGZF (Blocked GNU Zip Format), create BGZF indexes for random access, or prepare bioinformatics files for tabix indexing.
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Ct2db
Use when converting RNA connectivity-table (`.ct`) files into extended FASTA with dot-bracket structures, optionally removing pseudoknots or modified bases.
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Easel
Use when invoking the top-level `easel` dispatcher to discover or run Easel sequence-analysis subcommands from the HMMER toolchain.
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Epost
Use when you need to post unique identifiers or accession numbers to NCBI Entrez databases for subsequent retrieval operations
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Fastp
Use when processing raw FASTQ files for quality control, adapter trimming, length or complexity filtering, polyG tail trimming, or generating QC reports before downstream analysis.
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Mafft
Use when performing multiple sequence alignment on nucleotide or protein sequences, such as preparing alignments for phylogenetic analysis or comparative genomics.
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Seqtk
Use when doing lightweight FASTA/FASTQ transformations such as conversion, subsampling, subsequence extraction, trimming, or quick QC with seqtk.
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Tabix
Use when you need to index or query tab-delimited genomic files for fast region-based retrieval.
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Blastn
Use when performing nucleotide-nucleotide similarity searches to identify homologs, annotate sequences, or compare query sequences against nucleotide databases.
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Blastp
Use when comparing protein sequences against protein databases for similarity searches, homology detection, or functional annotation.
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Efetch
Use when you need to fetch records or data from NCBI Entrez databases (PubMed, nucleotide, protein, gene, SRA, etc.) by ID or accession
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Fastqc
Use when you need to perform quality control analysis on high-throughput sequencing data (fastq, bam, sam, or fast5 files) to identify potential problems before downstream analysis.
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Hisat2
Use when aligning RNA-seq reads to a reference genome using graph-based indexing for fast and sensitive spliced alignment.
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Muscle
Use when performing multiple sequence alignment of FASTA inputs, generating alignment ensembles, or calculating alignment confidence metrics.
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Nhmmer
Use when searching DNA or RNA queries against nucleotide sequence databases with HMMER's nucleotide homology search engine.
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Nquire
Use when making raw HTTP, E-utilities, PubChem, datasets, or FTP requests through the low-level EDirect transport wrapper.
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Repair
Use when paired-end reads need to be reordered so mates appear consecutively, or when preparing BAM files for featureCounts by adding dummy reads for singletons.
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Rnados
Use when summarizing an RNA folding landscape by counting how many structures fall into each energy band, rather than enumerating individual folds one by one.
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Seqkit
Use when working with FASTA or FASTQ files for statistics, filtering, transformation, format conversion, searching, or set operations.
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Ace2sam
Use when converting ACE assembly files into SAM while preserving legacy ACE-specific padded or contig-sequence behavior.
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Alimask
Use when masking columns or coordinate ranges in multiple-sequence alignments before downstream HMMER or alignment-processing steps.
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Bowtie2
Use when aligning short reads to a reference genome or indexed sequence database. Suitable for mapping FASTQ/FASTA reads in paired-end or single-end mode to produce SAM output.
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Efilter
Use when filtering Entrez search results by date, organism, publication type, sequence features, or other database-specific criteria in bioinformatics pipelines.
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Fill Aa
Use when filling ancestral alleles into the INFO column of VCF files using ancestral alignment data from 1000 Genomes or similar sources.
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Frequently asked questions

What are Coding & Dev Tools agent skills?

Coding agent skills teach AI agents repeatable engineering workflows: reviewing pull requests, writing tests, refactoring safely, and enforcing house style. Install one SKILL.md and your agent applies the same checklist every time, whether you use Claude Code, Cursor, Codex, or another agent.

Which Coding & Dev Tools skills are most installed?

Popular Coding & Dev Tools skills on SkillMD right now include op-ed-writer, iep-template, jwt-strategy. Rankings shift as installs change; sort this page by "Most downloaded" for the live list.

Do Coding & Dev Tools skills work with Claude Code and Cursor?

Yes. Every skill here ships as a SKILL.md file, an open format that works in Claude Code, Claude.ai, Cursor, Codex, Windsurf, and 60+ other agents. Install one with npx skillmds add <owner>/<name>, or copy the file into your agent's skills directory.