Docs & Writing
Docs & writing agent skills turn AI agents into dependable technical writers: READMEs, API references, PDFs and Word documents, changelogs, and style-guide enforcement. Install one and your agent produces the same structure and tone every time it writes.
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pku-yuangroup Bundle Bio Metabolomics Targeted AnalysisDesigns and validates quantitative targeted metabolomics assays (MRM/SRM on triple-quadrupole, PRM on high-resolution instruments) to report absolute concentrations. Covers the internal-standard strategy (external cal -> global IS -> standard addition -> stable-isotope-labeled IS), weighted calibration judged by back-calculated %RE not R-squared, ion-ratio quantifier/qualifier confirmation, matrix-effect/recovery characterization, and ICH M10 method validation. Use when quantifying a closed panel of known metabolites with units, building or validating an LC-MS/MS assay, choosing an IS or calibration weighting, or judging whether a reported concentration is trustworthy. For untargeted feature detection see metabolomics/xcms-preprocessing; for group statistics see metabolomics/statistical-analysis; for flux/MID/tracing see metabolomics/isotope-tracing.
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revfactory Bundle Meal Planner```markdown
- revfactory Bundle Legal Research
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- revfactory Bundle Tax Calculator
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- revfactory Bundle Nutrition Calculator
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- revfactory Bundle Regulatory Filing
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- revfactory Bundle Ir Narrative Builder
A skill that professionally supports investor report narrative construction. Used by strategy-updater and ir-reviewer when designing the tone, structure, and storyline of investor communications. Automatically applied in contexts such as 'investor narrative', 'equity story', 'IR message', 'strategy update story'. However, drafting statutory disclosure text or writing brokerage reports are outside the scope of this skill.
- revfactory Bundle Form Filling Guide
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- revfactory Bundle Tax Bracket Simulator
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- revfactory Bundle Pitch Deck Framework
Framework for pitch deck structure, storytelling, and slide design for fundraising. Use this skill for 'pitch deck framework', 'investor PT structure', 'pitch storyline', 'slide design', 'investor Q&A preparation', and other pitch deck writing tasks. Note: actual investment contract writing, legal review, and graphic design execution are outside the scope of this skill.
- revfactory Bundle Exercise Biomechanics
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ndpvt-web Skill Deep Researcher Sequential PlanConduct deep, multi-step research on complex topics using Sequential Plan Refinement with Reflection and Candidates Crossover. Maintains a Global Research Context across iterations so each search step builds on prior findings, avoids redundancy, and adapts the plan at runtime. Use this skill when: "research this topic in depth", "write a comprehensive report on", "deep dive into", "investigate and synthesize findings on", "generate a research report about", "analyze this complex topic thoroughly".
- ndpvt-web Skill Beyond Holistic Scores Automatic
Build trait-based essay scoring systems that evaluate argumentative writing across multiple rubric dimensions (Content, Organization, Word Choice, Sentence Fluency, Conventions) using structured in-context learning prompts and ordinal regression. Trigger phrases: 'score essays by trait', 'build essay grading rubric', 'argumentative essay evaluation', 'trait-based writing assessment', 'rubric-aligned essay scoring', 'automated writing feedback'.
- pku-yuangroup Bundle Bio Read Qc Contamination Screening
Detects contamination in sequencing reads - cross-species (FastQ Screen, Kraken2), vector/PhiX/adapter, rRNA, and same-species cross-sample/index-hopping and sample swaps (SNP fingerprints via verifyBamID2/NGSCheckMate/somalier). Use when suspecting cross-contamination, PDX host reads, microbial carry-over, or sample swaps, and to decide whether to report, filter, or align to a combined reference. For deep taxonomic profiling use metagenomics/kraken-classification.
- pku-yuangroup Bundle Bio Microbiome Functional Prediction
Predicts community functional POTENTIAL from 16S/ITS amplicon ASVs with PICRUSt2 (or q2-picrust2) by phylogenetic interpolation of reference-genome gene content - EPA-ng placement, gappa, castor hidden-state prediction of KO/EC/Pfam copy number, 16S copy-number normalization, and MinPath MetaCyc/KEGG pathways - gated by the NSTI quality index. Covers why predicted function is taxonomy re-encoded (never measured gene content and never activity), the mandatory NSTI report (--max_nsti 2 silently drops novel ASVs), why accuracy IS reference coverage (gut Spearman ~0.8, soil/marine collapse), the circularity trap, and Tax4Fun2/FAPROTAX/BugBase alternatives. Use when inferring KO/EC/MetaCyc potential from an ASV table, gating on NSTI, or choosing a prediction method. For MEASURED shotgun function see metagenomics/functional-profiling; for enrichment of KO lists see pathway-analysis/go-enrichment; for DA of predicted tables see differential-abundance.
- pku-yuangroup Bundle Bio Primer Design Primer Specificity
Checks whether a PCR primer PAIR amplifies only the intended target genome-wide, using pair-aware in-silico PCR (MFEprimer-3.0, UCSC isPcr, NCBI Primer-BLAST) plus a primer3-py 3'-end-stability prefilter, against the correct database. Covers why plain BLAST is the wrong tool (it scores per-primer similarity, blind to 3'-terminal anchoring and to whether the two primers form a convergent amplicon in range), why a single 3'-terminal mismatch suppresses amplification while internal mismatches are tolerated, why intron-spanning RT-qPCR is defeated by processed pseudogenes that force a GENOME search not transcriptome-only, how to read a Primer-BLAST report (empty unintended-products means none passed its filter, not none exist), and that in-silico checking reduces but never replaces empirical validation. Use when confirming specificity, screening off-target amplicons, avoiding paralog/pseudogene hits, or checking SNPs under the 3' end. Design is primer-basics; dimers primer-validation; alignment read-alignment.
- pku-yuangroup Bundle Bio Metagenomics Abundance
Turns shotgun classifier output into a defensible abundance table with Bracken Bayesian re-estimation, then compositional treatment (CLR, zero handling), library-size normalization, reference-frame differential abundance, and optional absolute quantification. Covers why a relative-abundance change is not a change, why Bracken read fractions and MetaPhlAn percentages are different physical quantities, the silent -r read-length bias, the genome-size confound no library-size method fixes, and the rarefaction debate. Use when estimating species abundance from a Kraken2 report, normalizing a community count table, choosing a compositional transform, or converting relative to absolute load. For classification see kraken-classification; for diversity/ordination/DA mechanics see metagenome-visualization.
- pku-yuangroup Bundle Bio Variant Annotation
Annotates VCF variants with functional consequences, population frequencies, and pathogenicity scores using bcftools annotate/csq, Ensembl VEP, SnpEff, and ANNOVAR. Use when deciding which annotation engine and version to pin, which transcript set to report on (RefSeq vs Ensembl vs MANE Select/Plus Clinical, and why VEP --pick is dangerous clinically), how to reconcile HGVS 3'-shifting with VCF left-alignment, which consequence plus NMD status governs PVS1 eligibility, which single calibrated predictor to use for PP3/BP4 (REVEL, AlphaMissense, CADD, SpliceAI deltas), or how to read gnomAD v2/v3/v4 grpmax filtering allele frequency instead of one global AF cutoff. Not for ACMG combining rules or final classification (see variant-calling/clinical-interpretation).
- revfactory Bundle Case Analysis Framework
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- revfactory Bundle Sdk Design Patterns
SDK/API client design patterns: builder pattern, interceptor chain, retry strategy, type-safe design, error handling, and pagination wrapper guide. Use this skill for requests involving 'SDK design', 'client patterns', 'retry strategy', 'interceptor', 'builder pattern', 'SDK error handling', 'type safety', 'SDK architecture', etc. Enhances sdk-developer's SDK design capabilities. Note: API spec parsing, test authoring, and documentation are outside the scope of this skill.
- revfactory Bundle Legal Writing Methodology
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- revfactory Bundle Cross Document Linker
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- revfactory Bundle Unfair Terms Detector
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- revfactory Bundle Deduction Optimizer Engine
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- revfactory Bundle Gdpr Pipa Cross Reference
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- revfactory Bundle Ingredient Substitution Engine
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yigityildiz0 Skill PDFInspect, extract, create, combine, split, rotate, redact, OCR, or fill PDF files with provenance and visual validation. Use whenever PDF is the main input or deliverable; preserve originals, distinguish visual redaction from secure removal, and never break signatures or protections silently.
Audited - yigityildiz0 Skill Find Docs
Retrieves up-to-date documentation, API references, and code examples for any developer technology. Use this skill whenever the user asks about a specific.
- yigityildiz0 Bundle API Design
API design principles for REST, GraphQL, and gRPC including versioning, pagination, error handling, and documentation. Use when designing new APIs.
- yigityildiz0 Skill Cloudflare
Design, implement, or troubleshoot applications on current Cloudflare products using project configuration and official documentation. Use for Workers.
Audited - yigityildiz0 Skill PDF Viewer
PDF-viewing umbrella skill. Use when Codex should inspect, extract, compare, or summarize PDF files as primary source artifacts.
- yigityildiz0 Bundle Final Report
Consolidate all review findings into a structured 4-section report with codebase overview, executive summary, dual-view detailed findings (by feature and by.
- yigityildiz0 Skill Doc Coauthoring
Guide users through a structured workflow for co-authoring documentation. Use when user wants to write documentation, proposals, technical specs, decision.
- yigityildiz0 Skill DOCX Generation
Word document generation and manipulation expertise for creating, editing, and templating professional DOCX files programmatically. Use when building.
- yigityildiz0 Skill PPTX Generation
PowerPoint presentation generation expertise for creating, editing, and designing professional slide decks programmatically. Use when building presentation.
- yigityildiz0 Bundle Writing Editing
Professional writing and editing principles for clear, concise documentation and prose. Use when asked to write, edit, rewrite, or review documents, README.
Frequently asked questions
What are Docs & Writing agent skills?
Docs & writing agent skills turn AI agents into dependable technical writers: READMEs, API references, PDFs and Word documents, changelogs, and style-guide enforcement. Install one and your agent produces the same structure and tone every time it writes.
Which Docs & Writing skills are most installed?
Popular Docs & Writing skills on SkillMD right now include bio-metabolomics-targeted-analysis, meal-planner, legal-research. Rankings shift as installs change; sort this page by "Most installs" for the live list.
Do Docs & Writing skills work with Claude Code and Cursor?
Yes. Every skill here ships as a SKILL.md file, an open format that works in Claude Code, Claude.ai, Cursor, Codex, Windsurf, and 60+ other agents. Install one with npx skillmds@latest add <owner>/<name>, or copy the file into your agent's skills directory.