Integrations & APIs

sboghossian-mini-claude-for-legal Skill

Use when you need a structured, per-clause risk assessment of a contract. Categorizes each identified risk as critical, medium, or low, with a short rationale and proposed fix for each. Applies a consistent severity taxonomy across all contract types, with MENA-specific flags for penalty clause enforceability, arbitration clause adequacy, and data protection gaps. Produces machine-readable JSON output suitable for integration into review workflows.

gptomics Bundle

Maps query single-cell data onto reference atlases and transfers cell-type labels using scArches surgery (scVI/scANVI), Symphony, Azimuth, CellTypist, scPoli, popV, and foundation models, with explicit out-of-distribution and label-transfer uncertainty. Use when annotating new single-cell datasets against a pre-trained reference, deciding which mapping method fits, or judging whether transferred labels are trustworthy. For de novo clustering and manual annotation see single-cell/cell-annotation; for batch integration without a reference see single-cell/batch-integration.

sboghossian-mini-claude-for-legal Skill

Use when a matter or query involves the Omani Ministry of Justice and Legal Affairs (MJLA), the Omani court system, e-justice portal services, Omani government document templates, or lawyer registration and regulation in the Sultanate of Oman. Covers Omani court hierarchy and jurisdiction, electronic filing through Taqneen/e-justice systems, notarial services, and the legal framework governing professional practice in Oman. Relevant for GCC practitioners working on Oman-seated matters or clients navigating Omani judicial institutions.

gptomics Bundle

Imports gene expression count matrices from featureCounts, HTSeq, STAR ReadsPerGene, Salmon/kallisto via tximport or tximeta, RSEM, 10X Genomics MTX/H5, AnnData H5AD, and RDS. Handles silent-miscounting traps (featureCounts -p v2.0.2 API break, STAR strandedness column choice, salmon NumReads-sum without tximport, RSEM non-integer expected_count, GENCODE _PAR_Y suffix, zero-length-transcript TPM divide-by-zero), and encodes the tximport countsFromAbundance decision tree with the "lengthScaledTPM is not TPM" warning. Use when assembling a gene-by-sample count matrix from aligner or quantifier output, importing salmon/kallisto for DESeq2 vs limma-voom, choosing strandedness column for STAR, debugging zero-count panics, or building tx2gene mapping.

oimiragieo Bundle

Discover, parse, and call external HTTP APIs at runtime using OpenAPI specs, tool templates, and iterative chaining. Adapted from UTCP (Universal Tool Calling Protocol) patterns for Node.js and Claude Code agents.

oimiragieo Bundle

Verify that implementation code faithfully implements its specification — checks function contracts, API contracts, and protocol compliance against source specifications

oimiragieo Skill

Builds cross-area integration tests for the mission engine module system

oimiragieo Bundle

Specifies best practices, including following RESTful API design principles, implementing responsive design, using Zod for data validation, and regularly updating dependencies. This skill promotes modern coding standards and helps developers write consistent, maintainable code.

sboghossian-mini-claude-for-legal Skill

Use when a matter or query involves the Saudi Ministry of Justice (MOJ) digital services, the Najiz court portal, Saudi government document templates, or official legal information issued by Saudi judicial bodies. Covers court case lookup, e-filing workflows, notarization through the MOJ, government legal document standards, and lawyer registration verification under the Saudi MOJ and Justice Ministry-affiliated bodies. Relevant for practitioners working on KSA-seated matters or clients navigating the Saudi judicial system.

sboghossian-mini-claude-for-legal Skill

Use when a matter or query involves the UAE Ministry of Justice, emirate-level court systems (Dubai Courts, Abu Dhabi Judicial Department, Sharjah Courts), electronic filing portals, government legal document templates, or notarial services in the UAE. Covers both onshore UAE courts (civil law framework under Federal Decree-Law) and offshore financial center courts (DIFC Courts, ADGM Courts — common law). Relevant for practitioners working on UAE-seated matters, e-filing, court judgment enforcement, or document authentication.

gptomics Bundle

Renders Hi-C contact matrices honestly and reproducibly with matplotlib, cooltools, HiCExplorer, pyGenomeTracks, FAN-C, CoolBox, and plotgardener. Covers the raw/ICE-balanced/observed-over-expected transform choice, LogNorm vs symmetric-diverging colormaps with vmax/percentile clipping, resolution-to-feature matching (compartments 100-500kb, TADs 10-40kb, loops 5-10kb), square vs rotated-triangle track-stacking, NaN/white-stripe handling, virtual 4C, APA/saddle/on-diagonal pileups, two-condition side-by-side and log2-ratio maps, and interactive (HiGlass) vs scripted-static publication figures. Use when plotting a contact matrix, choosing a normalization or color scale, building a multi-track Hi-C figure, making a virtual 4C profile, piling up loops/boundaries, or comparing two conditions.

gptomics Bundle

Programmatic untargeted LC-MS feature extraction in R with the modern xcms 4.x MsExperiment/XcmsExperiment API, taking raw mzML to a feature table via CentWave peak detection, retention-time alignment, peak-density correspondence, gap-filling, CAMERA redundancy collapse, and built-in QC feature filtering. Use when converting centroided LC-MS runs into a features-by-samples matrix and deciding centWave/grouping/alignment parameters. For drift correction and QC/CV filtering execution see metabolomics/normalization-qc; for metabolite identification see metabolomics/metabolite-annotation; for the MS-DIAL GUI alternative with MS2Dec deconvolution see metabolomics/msdial-preprocessing; for downstream statistics see metabolomics/statistical-analysis.

gptomics Bundle

Detects allele-specific transcription factor or histone modification binding from heterozygous-variant ChIP-seq using WASP (reference-bias filter; mandatory upstream), RASQUAL (joint QTL + bias-corrected testing), BaalChIP (Bayesian beta-binomial with copy-number-aware overdispersion), and AlleleSeq (personalized diploid genome). Handles imprinted-locus awareness, X-inactivation artifacts, cancer copy-number imbalance, and integration with downstream caQTL / bQTL mapping. Use when identifying variants with allelic effects on TF binding, fine-mapping causal regulatory variants, validating deep-learning variant predictions, or characterizing cis-acting regulatory effects.

intent-solutions-io Bundle

Forecasts multiple time series in parallel batches using TimeGPT API. Optimizes throughput with rate limiting and supports portfolio aggregation. Use when processing 10-100+ contracts or needing efficient multi-series forecasting. Trigger with "batch forecast", "portfolio forecast", "parallel forecasting".

oimiragieo Bundle

Specifies standards for RestController classes, including API route mappings, HTTP method annotations, dependency injection, and error handling with ApiResponse and GlobalExceptionHandler.

intent-solutions-io Skill

This skill enables Claude to monitor and analyze application error rates to improve reliability. It is used when the user needs to track and understand errors occurring in their application, including HTTP errors, application exceptions, database errors, external API errors, background job errors, and client-side errors. Use this skill when the user asks to "monitor errors", "analyze error rates", "track application errors", or requests help with "error monitoring". It sets up comprehensive error tracking and alerting based on defined thresholds.

sboghossian-mini-claude-for-legal Skill

Use when planning or executing Louis's partnership strategy across integration, distribution, and data-partnership classes. Covers Microsoft, Google, DocuSign, Tawqi3i integrations; bar-association and university distribution channels in KSA, UAE, and Lebanon; and legal-database data partnerships for MENA jurisdiction corpora. Internal use only.

sboghossian-mini-claude-for-legal Skill

Use when connecting a lawyer's Google Calendar, Outlook, or iCal to Louis for deadline management, court-date blocking, and statute-of-limitations reminders. Enables automatic calendar population from matter management, priority-based meeting-slot suggestions, and deep-work time blocking for drafting workflows. Pairs with the deadline calculator for end-to-end legal deadline orchestration.

gptomics Bundle

Queries ClinVar for variant pathogenicity classifications, ClinGen VCEP curations, and somatic-vs-germline interpretations via REST API, weekly VCF, or bulk XML. Use when determining clinical significance, triangulating conflicting interpretations, or aggregating evidence against the ACMG/AMP framework with ClinGen SVI specifications.

gptomics Bundle

Analyzes CRISPR drug-modifier (chemogenomic) screens with drugZ (Colic et al. 2019 Genome Med), a bidirectional Z-score method that identifies synthetic-lethal sensitizing genes and resistance-conferring suppressor genes from vehicle vs drug comparisons. Covers vehicle-anchored design (not Day-0), the bidirectional Z math giving greater sensitivity to small-effect hits than MAGeCK / STARS / edgeR / RIGER on drug screens, per-gene sumZ and normZ, synth (sensitizer) vs supp (suppressor) FDR, multi-dose handling, integration with control sgRNAs, and comparison with MAGeCK MLE with dose covariate. Use when running a drug-modifier CRISPR screen, identifying sensitizing or resistance genes for a drug candidate, choosing drugZ vs MAGeCK MLE for chemogenomic analysis, troubleshooting low-effect drug screens where MAGeCK lacks sensitivity, or designing a drug-screen layout (vehicle vs drug arms).

sboghossian-mini-claude-for-legal Skill

Use when a lawyer or legal-operations user needs to read, search, or attach Google Drive documents to a legal matter — including retrieving draft contracts, precedent documents, due-diligence files, or correspondence stored in Drive as context for AI-assisted drafting or review. Requires Google OAuth per-user authorization. Triggers on requests to access a Drive file, find documents by keyword, or attach Drive content to a matter workspace.

intent-solutions-io Skill

This skill validates API contracts using consumer-driven testing and OpenAPI validation. It leverages Pact for consumer-driven contract testing, ensuring that API providers adhere to the expectations of their consumers. It also validates APIs against OpenAPI specifications to guarantee compliance and identify breaking changes. Use this skill when the user asks to generate contract tests, validate API responses, check backward compatibility, or validate requests/responses using the terms "contract-test", "ct", "Pact", "OpenAPI validation", or "consumer-driven contract testing".

intent-solutions-io Skill

This skill enables Claude to run and manage integration test suites. It automates environment setup, database seeding, service orchestration, and cleanup. Use this skill when the user asks to "run integration tests", "execute integration tests", or any command that implies running integration tests for a project, including specifying particular test suites or options like code coverage. It is triggered by phrases such as "/run-integration", "/rit", or requests mentioning "integration tests". The plugin handles database creation, migrations, seeding, and dependent service management.

intent-solutions-io Skill

This skill automates the setup of synthetic monitoring for applications. It allows Claude to proactively track performance and availability by configuring uptime, transaction, and API monitoring. Use this skill when the user requests to "set up synthetic monitoring", "configure uptime monitoring", "track application performance", or needs help with "proactive performance tracking". The skill helps to identify critical endpoints and user journeys, design monitoring scenarios, and configure alerts and dashboards.

autohandai-community-skills Bundle

cuOpt REST server — start server, endpoints, Python/curl client examples. Use when the user is deploying or calling the REST API.

sboghossian-mini-claude-for-legal Skill

Use when a matter requires notarization, authentication, or apostille of a legal document across MENA jurisdictions (LB, KSA, UAE, EG). Covers Lebanese Notaires Publics, Saudi MOJ notary services, UAE federal and emirate-level notaries, Egyptian notarization offices, cross-border Tawqi3i e-notarization, and Hague Apostille procedures. Surfaces notary requirements for specific document types, helps practitioners identify the correct notarial authority, and generates pre-notarization checklists.

sboghossian-mini-claude-for-legal Skill

Internal architectural principle establishing that a user's matter context — parties, jurisdiction, documents, prior analysis — follows them across all product surfaces (chat, document editor, drafting tool, calculators, matter view). Use when designing any new surface, integration, or skill to understand how context is persisted and accessed.

sboghossian-mini-claude-for-legal Skill

Use when a lawyer or IP professional needs to search the WIPO Global Brand Database for existing trademark registrations — by mark name, owner, Nice class, or jurisdiction — as part of trademark clearance, freedom-to-operate analysis, brand due diligence, or Madrid Protocol application preparation. Free public API; rate-limited. Triggers on any trademark search, brand clearance, IP due diligence, or trademark conflict analysis across multiple jurisdictions including MENA, EU, UK, and international registrations.

autohandai-community-skills Bundle

Vehicle routing (VRP, TSP, PDP) with cuOpt — Python API only. Use when the user is building or solving routing in Python.

sboghossian-mini-claude-for-legal Skill

Use when migrating Anthropic-format compliance configuration data — safety rules, content policy rules, capability limits, behavioral guardrails, and usage policy settings — from an Anthropic API or Claude Console source into the Louis platform's compliance and safety configuration schema. Maps the source compliance shape to Louis's safety-compliance layer, with dry-run preview, conflict detection, and a mandatory human-review gate before any compliance rule is activated in production.

autohandai-community-skills Bundle

Vehicle routing (VRP, TSP, PDP) — problem types and data requirements. Domain concepts; no API or interface.

autohandai-community-skills Bundle

Automate OSINT collection using SpiderFoot REST API and CLI for target profiling, module-based reconnaissance, and structured result analysis across 200+ data sources

sboghossian-mini-claude-for-legal Skill

Use when a user in one product context would clearly benefit from moving to another product in the suite — Justinian (legal education) users who are ready for Louis (legal practice), free public-tool users who should subscribe, Louis subscribers who have enterprise-tier usage patterns, or enterprise clients who should explore white-label or API access. Applies the right bridge message at the right moment without interrupting the current task.

sboghossian-mini-claude-for-legal Skill

Use when a legal-AI workflow needs to create, manage, or trigger recurring automated tasks — deadline reminders, periodic risk scans, weekly digest emails, document expiry alerts, or regulatory-change monitoring. This is a built-in platform capability, not an external integration. Triggers on any request to "remind me," "check this weekly," "alert me when," or "run this every [interval]" within a legal workflow context.

autohandai-community-skills Bundle

Detect and prevent API enumeration attacks including BOLA and IDOR exploitation by monitoring sequential identifier access patterns and authorization failures.

gptomics Bundle

Identifies differential m6A methylation between conditions from MeRIP-seq paired IP/input data using exomePeak2 (GC-bias-aware differential via its bam_ip/bam_input control + bam_treated_ip/bam_treated_input treatment arms), QNB beta-binomial, MeTDiff HMM, and RADAR, plus the paired-symmetric edgeR/DESeq2-on-peak-counts route when batch/lot covariates need fixed-effect handling that exomePeak2's API does not accept. Covers paired vs unpaired vs interaction designs, batch confounding and per-lot meta-analysis, the stoichiometry-vs-expression-vs-IP-efficiency confound, and effect-size filtering against under-powered N=2 designs. Use when comparing m6A across two or more conditions, choosing between exomePeak2/QNB/RADAR/MeTDiff for a design, handling batch confounding when exomePeak2's API is too rigid, distinguishing real hyper/hypo-methylation from expression shifts, applying effect-size thresholds, or planning orthogonal stoichiometry validation (GLORI/SAC-seq/m6Anet mod_ratio).