Integrations & APIs
Integration agent skills teach AI agents to work with specific external services and APIs: third-party platforms, webhooks, MCP servers, and data syncs. Instead of re-explaining an API every session, install the skill and the agent knows the endpoints and conventions.
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holobiomicslab Skill Editable Development Mode Installation And VerificationUse when when you are developing or contributing to a Python package (like cooltools) and need to test changes to utility functions, library integrations, or API implementations without reinstalling the package after each modification. Apply this when you must verify that a new function (e.
Audited - holobiomicslab Skill Search Result Integration With Raw Mass Spectrometry Data
Use when when you have completed a DIA-MS proteomics search (e.
Audited - holobiomicslab Skill Heterogeneous Data Format Integration And Harmonization
Use when your input consists of multiple external databases with different file formats, column names, identifier schemes, and taxonomic/chemical vocabularies (e.g., 31 open natural product databases with heterogeneous structure and organism metadata).
Audited - holobiomicslab Skill Natural Products Structure Organism Association Integration
Use when you have separately cleaned and validated tables for organisms (interim/tables/2_cleaned/organism/cleaned.tsv.gz), structures (interim/tables/1_translated/structure/final.tsv.gz and interim/tables/2_cleaned/structure/named.tsv.gz), references (interim/tables/2_cleaned/reference/cleaned.tsv.
Audited -
diegosouzapw Bundle Yes MdYES.md — AI Governance Engine workflow skill. Use this skill when the user needs 6-layer AI governance: safety gates, evidence-based debugging, anti-slack detection, and machine-enforced hooks. Makes AI safe, thorough, and honest and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - holobiomicslab Skill Sequential Tool Integration And Data Routing
Use when when you have raw LC-HRMS metabolomics data in .mzML or .
Audited - holobiomicslab Skill API Query Routing Conditional Per Database
Use when when you have a chemical structure query (as a SMILES string or molecular identifier) and need to search across multiple external chemical repositories simultaneously, but only some repositories are relevant for your specific compound class (e.
Audited - holobiomicslab Skill Mass Spectrometry Data Matrix Construction
Use when you have raw spatial metabolomics imzML files (paired with .ibd binary data files) that need to be loaded into a unified AnnData format for integration with spatial transcriptomics data or for cross-modal spatial pattern identification in single or multiple sample datasets.
Audited - holobiomicslab Skill Structural Representation Format Detection
Use when when you have a mixed-format input query that may contain a compound identifier and a structural representation separated by a tab delimiter, and you need to determine which ClassyFire API endpoint (SMILES, InChI, IUPAC, or FASTA) to submit the query to for chemical classification.
Audited - holobiomicslab Skill Oracle Mode Structural Constraint Integration
Use when when you have loaded both a known compound and its modified analog with MS/MS spectra, initially generated baseline modification probability scores, and then obtained or confirmed the structure of the modified compound.
Audited - diegosouzapw Bundle Telegram V2
Telegram Bot API - Integracao Profissional workflow skill. Use this skill when the user needs Integracao completa com Telegram Bot API. Setup com BotFather, mensagens, webhooks, inline keyboards, grupos, canais. Boilerplates Node.js e Python and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Agentmail V2
AgentMail — Email for AI Agents workflow skill. Use this skill when the user needs Email infrastructure for AI agents. Create accounts, send/receive emails, manage webhooks, and check karma balance via the AgentMail API and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Sveltekit V2
SvelteKit Full-Stack Development workflow skill. Use this skill when the user needs Build full-stack web applications with SvelteKit — file-based routing, SSR, SSG, API routes, and form actions in one framework and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Agentphone V2
AgentPhone workflow skill. Use this skill when the user needs Build AI phone agents with AgentPhone API. Use when the user wants to make phone calls, send/receive SMS, manage phone numbers, create voice agents, set up webhooks, or check usage — anything related to telephony, phone numbers, or voice AI and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Game Audio V2
Game Audio Principles workflow skill. Use this skill when the user needs Game audio principles. Sound design, music integration, adaptive audio systems and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle IOS Developer
ios-developer workflow skill. Use this skill when the user needs Develop native iOS applications with Swift/SwiftUI. Masters iOS 18, SwiftUI, UIKit integration, Core Data, networking, and App Store optimization and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Nestjs Expert
Nest.js Expert workflow skill. Use this skill when the user needs You are an expert in Nest.js with deep knowledge of enterprise-grade Node.js application architecture, dependency injection patterns, decorators, middleware, guards, interceptors, pipes, testing strategies, database integration, and authentication systems and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Fp Async
Practical Async Patterns with fp-ts workflow skill. Use this skill when the user needs Practical async patterns using TaskEither - clean pipelines instead of try/catch hell, with real API examples and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Manifest
Manifest Setup workflow skill. Use this skill when the user needs Install and configure the Manifest observability plugin for your agents. Use when setting up telemetry, configuring API keys, or troubleshooting the plugin and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Telegram
Telegram Bot API - Integracao Profissional workflow skill. Use this skill when the user needs Integracao completa com Telegram Bot API. Setup com BotFather, mensagens, webhooks, inline keyboards, grupos, canais. Boilerplates Node.js e Python and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Github V2
GitHub Skill workflow skill. Use this skill when the user needs Use the gh CLI for issues, pull requests, Actions runs, and GitHub API queries and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Yes Md V2
YES.md — AI Governance Engine workflow skill. Use this skill when the user needs 6-layer AI governance: safety gates, evidence-based debugging, anti-slack detection, and machine-enforced hooks. Makes AI safe, thorough, and honest and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Agentphone
AgentPhone workflow skill. Use this skill when the user needs Build AI phone agents with AgentPhone API. Use when the user wants to make phone calls, send/receive SMS, manage phone numbers, create voice agents, set up webhooks, or check usage — anything related to telephony, phone numbers, or voice AI and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Game Audio
Game Audio Principles workflow skill. Use this skill when the user needs Game audio principles. Sound design, music integration, adaptive audio systems and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle GRAPHQL V2
GraphQL workflow skill. Use this skill when the user needs GraphQL gives clients exactly the data they need - no more, no and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Testing QA
Testing/QA Workflow Bundle workflow skill. Use this skill when the user needs Comprehensive testing and QA workflow covering unit testing, integration testing, E2E testing, browser automation, and quality assurance and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - diegosouzapw Bundle Fp Async V2
Practical Async Patterns with fp-ts workflow skill. Use this skill when the user needs Practical async patterns using TaskEither - clean pipelines instead of try/catch hell, with real API examples and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.
54 - holobiomicslab Skill Metabolomics Workbench API Integration
Use when when you need to analyze a publicly archived lipidomics study (identified by study_id like ST001111) and want to bypass manual data download and format conversion.
Audited - holobiomicslab Skill Multimodal Spot Correspondence Mapping
Use when when you have paired spatial transcriptome and metabolome datasets in h5ad format with spatial coordinate matrices (obsm['spatial']) and you need to establish spot-level correspondence across modalities for downstream integration or co-analysis.
Audited - holobiomicslab Skill Script Repository Workflow Integration
Use when you have cloned or downloaded scripts from a development repository (e.g., github.com/InnovativeOmics/Core-Match) and need to incorporate edits into an installed distribution copy of LipidMatch-4.2 or FluoroMatch.
Audited - holobiomicslab Skill Spatial Data Integration Preprocessing
Use when when you have paired spatial transcriptome and metabolome datasets (in .h5ad or matrix format) with spatial location information, and you need to establish correspondence between features across modalities before performing spatial morphological alignment.
Audited - holobiomicslab Skill Extracellular Flux Constraint Integration
Use when you have constraint-based metabolic models of multiple cell lines, experimental measurements of extracellular metabolite concentrations at two timepoints (e.
Audited - holobiomicslab Skill Mass Spectrometry Data Loader Integration
Use when you have mass spectrometry data available in multiple identifier formats (GNPS Task ID, Universal Spectrum Identifier, or Feature-Based Molecular Networking task reference) and need to route each format to its specific loader without manual preprocessing.
Audited - holobiomicslab Skill HTTP API Integration With External Services
Use when when your application needs to enrich or predict spectral properties (NMR peaks, molecular structure) by querying external databases, and you have peak data (chemical shift, multiplicity, integration) that must be transformed into a remote service's query format, validated, and the.
Audited - holobiomicslab Skill Asynchronous Converter Job Orchestration
Use when you have mass spectrum records in .msp format lacking computed chemical metadata (SMILES, InChI, CAS numbers, formulas, IUPAC names) and want to fetch these properties from multiple heterogeneous web services without blocking on individual API calls.
- holobiomicslab Skill File Interface Integration And Extension
Use when when you need to parse mzML data stored in a format beyond the built-in mzML, mzML.
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Frequently asked questions
What are Integrations & APIs agent skills?
Integration agent skills teach AI agents to work with specific external services and APIs: third-party platforms, webhooks, MCP servers, and data syncs. Instead of re-explaining an API every session, install the skill and the agent knows the endpoints and conventions.
Which Integrations & APIs skills are most installed?
Popular Integrations & APIs skills on SkillMD right now include editable-development-mode-installation-and-verification, search-result-integration-with-raw-mass-spectrometry-data, heterogeneous-data-format-integration-and-harmonization. Rankings shift as installs change; sort this page by "Most installs" for the live list.
Do Integrations & APIs skills work with Claude Code and Cursor?
Yes. Every skill here ships as a SKILL.md file, an open format that works in Claude Code, Claude.ai, Cursor, Codex, Windsurf, and 60+ other agents. Install one with npx skillmds@latest add <owner>/<name>, or copy the file into your agent's skills directory.