Research & Search

mims-harvard Skill

Ecology, biodiversity, and conservation biology research — species identification (GBIF, NCBI Taxonomy), invasive species impact, ecosystem dynamics, conservation status (IUCN), niche ecology. Use for biodiversity questions, species comparison, invasion biology, conservation prioritization, and ecology-related literature search.

mims-harvard Bundle

Deep literature review — PubMed, EuropePMC, bioRxiv preprints, citation networks, evidence synthesis. Disambiguates queries, runs collision-aware searches, grades evidence T1-T4, and produces structured reports. Use for systematic literature review, meta-analysis evidence collection, and detailed answer-with-citations workflows.

mims-harvard Skill

End-to-end drug safety review integrating FDA labels, FAERS adverse event reports, PRR/ROR disproportionality, pharmacogenomic biomarkers, clinical trial data, and published literature. Use for regulatory drug safety reviews, comprehensive pharmacovigilance reports, label-vs-real-world AE comparison, and clinical decision support for drug safety.

mims-harvard Skill

Microbiome and metagenomics analysis using MGnify, GTDB taxonomy, ENA sequencing data, and EuropePMC literature. Covers taxonomic classification, genome quality assessment, biome-clinical phenotype linkage, and pathway interpretation. Use for amplicon/shotgun metagenomics study analysis.

mims-harvard Skill

Immunology research workflows: antibody-antigen interactions, T/B cell repertoire, MHC/HLA binding prediction, autoimmune disease genetics, vaccine epitope mapping. Uses IEDB, IMGT, SAbDab, UniProt. Use for adaptive immunity questions, immune response analysis, antibody/TCR/BCR characterization, immunogenicity prediction, and immune-pathway-to-disease mapping.

mims-harvard Skill

Given a set of residues in a protein, explain WHY they are functionally critical by combining structural context (binding interface, ligand pocket, core, secondary structure), UniProt features (active sites, binding sites, PTM sites, disulfides), optional SAE feature evidence, and optional DMS data. Accepts residues from any source: DMS hotspots (top-K by max effect), ClinVar recurrent variants, literature-reported hot regions, evolutionarily conserved positions, or user-curated lists. Returns a per-cluster mechanism call: catalytic / ligand-binding / interface / structural-core / PTM / regulatory / unknown.

fabioc-aloha Skill

Legal research, contract analysis, regulatory compliance, and case law citation for legal professionals.

fabioc-aloha Skill

Research project scaffolding, thesis/dissertation writing, literature reviews, publication workflows, and Alex-assisted academic workflows

fabioc-aloha Skill

Translate research vision into funded reality.

fabioc-aloha Skill

Don't overwhelm — chunk, scaffold, summarize first.

fabioc-aloha Skill

CSAR Loop and structured conversation patterns for effective AI dialog -- Clarify, Summarize, Act, Reflect

rudironsoni Bundle

Use when user requests research requiring multiple sources, comprehensive analysis, or synthesis across topics - technical research, domain knowledge gathering, market analysis, or learning about complex subjects

duclm1x1 Skill

Magic 8 Ball

pjt222 Skill

Fuehrt ein Peer-Review von Forschungsmethodik, Versuchsdesign und Manuskriptqualitaet durch. Umfasst Methodenbewertung, statistische Angemessenheit, Reproduzierbarkeitsbewertung, Biasidentifikation und konstruktives Feedback. Verwenden bei der Begutachtung eines Manuskripts, Preprints oder internen Forschungsberichts, bei der Bewertung eines Forschungsvorschlags oder Studienprotokolls, bei der Einschaetzung der Beweisqualitaet hinter einer Behauptung oder beim Review eines Dissertationskapitels.

pjt222 Skill

Sammeln and preserve insect specimens following museum-grade standards einschliesslich legal compliance, collection methods, humane dispatch, dry pinning, wet preservation, labeling, storage, and curation. Umfasst permit requirements, protected species regulations, sweep nets, beating trays, pitfall traps, light traps, Malaise traps, aspirators, ethyl acetate killing jars, freezing, pin placement by order, wing spreading, ethanol preservation for soft-bodied specimens, specimen labeling with locality and date, storage with pest management, and database entry. Verwenden wenn building a reference collection for taxonomic study, preserving voucher specimens for ecological research, preparing specimens for identification by specialists, or curating an existing collection.

pjt222 Skill

Theoretische Literatur zu einem bestimmten Thema sichten und synthetisieren, richtungsweisende Arbeiten, Schluesselergebnisse, offene Probleme und domaenenuebergreifende Verbindungen identifizieren. Verwenden beim Beginn von Forschung zu einem unbekannten theoretischen Thema, beim Schreiben einer Literatururebersicht fuer eine Arbeit oder Dissertation, beim Identifizieren offener Probleme und Forschungsluecken, beim Finden domaenenuebergreifender Verbindungen oder beim Bewerten der Neuheit eines vorgeschlagenen theoretischen Beitrags gegenueber bestehendem Werk.

jantoniofc Bundle

Use this skill to query your Google NotebookLM notebooks directly from Claude Code for source-grounded, citation-backed answers from Gemini. Browser automation, library management, persistent auth. Drastically reduced hallucinations through document-only responses.

projectious-work Bundle

Investigates a question systematically before answering — verifying claims through sources, distinguishing known facts from inferences, and calibrating expressed confidence to actual certainty. Use when asked to research a topic, verify a claim, evaluate a technology, or answer a question where accuracy matters more than speed.

jeremylongshore Skill

Prepare briefings for today's meetings — attendee research, email history, past meeting notes, LinkedIn, and company context. Use when running the daily meeting prep cron, or when user asks to prepare for meetings, review who they're meeting with, or get context on upcoming calls.

diegosouzapw Bundle

AI-powered web search, research, and reasoning via Perplexity

johnalbertini14-glitch Bundle

Sync and process bookmarks from Raindrop.io. Use when fetching new bookmarks, analyzing saved content, or syncing bookmarks to knowledge base. Triggers on "raindrop", "bookmarks", "sync bookmarks", "new saves".

johnalbertini14-glitch Bundle

Deep investigation across multiple sources with analysis. Creates comprehensive reports. Use when user says "deep research", "investigate", "thorough analysis".

johnalbertini14-glitch Skill

Outcome-driven scientific publishing for AI agents. Publish research papers, hypotheses, and experiments with validated artifacts, structured claims, milestone tracking, and independent replications. Claim replication bounties, submit peer reviews, and collaborate with other AI researchers.

johnalbertini14-glitch Bundle

Literature Search Skill

holobiomicslab Skill

Use when you have a published research article describing a new FT-ICR MS analysis tool and need to verify which analytical and visualization features are actually implemented (not just claimed).

holobiomicslab Skill

Use when you have a query MS/MS spectrum and need to identify the -matching library spectrum from a large spectral database, particularly when the research goal requires distinguishing between exact matches and structural analogues without separate workflows.

holobiomicslab Skill

Use when after biclustering a normalized microbe-metabolite feature attribution score matrix into distinct functional modules, use this skill to summarize pairwise module interactions by aggregating scores between all microbe-metabolite pairs from different modules.

holobiomicslab Skill

Use when you have a collection of raw mass spectrometry data files from multiple instrument vendors (Agilent, Bruker, Thermo) and/or mzML exports that need to be converted to a standardized, cross-platform format for downstream software development, AI research, or multi-vendor meta-analysis.

holobiomicslab Skill

Use when you have a processed mass spectrum object with assigned molecular formulas for individual peaks and need to summarize peaks by their heteroatom composition—e.

holobiomicslab Skill

Use when when you have CANOPUS chemical class predictions for your samples and need to identify which extracts contain chemical classes absent from the literature for their species or genus.

tools-only Bundle

PubMed Search Guide

tools-only Bundle

Complete Problem-Based Software Requirements Specification methodology following Gorski & Stadzisz research. Use when you need to perform requirements engineering from business problems to functional requirements with full traceability.

tools-only Bundle

ARC (AI2 Reasoning Challenge) benchmark for evaluating grade-school science reasoning with multiple-choice questions.

tools-only Bundle

GAIA evaluates general AI assistant capabilities including multi-step reasoning, web browsing, tool use, and multi-modality on real-world questions with unambiguous answers.

tools-only Bundle

Aleph

tools-only Bundle

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