Results for “pe-analysis”

High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.

Identifies the weakest samples per ground-truth label in NVIDIA TAO VCN Classify experiments by running a Docker container that performs threshold sweep, weakness scoring, and per-lighting expansion, then surfaces top-K weak samples for downstream augmentation or relabeling.

Perform survival analysis and time-to-event modeling in Python using scikit-survival, including Cox models, random survival forests, gradient boosting, survival SVMs, and evaluation metrics like concordance index and Brier score.

Analyse student work against criteria to identify specific gaps between current performance and learning objectives. Use when reviewing submissions, planning feedback, or diagnosing learning needs.

Tests and debugs web applications in real browsers using Chrome DevTools MCP, enabling DOM inspection, console error capture, network analysis, performance profiling, and visual verification with live runtime data.

Master systematic debugging techniques, profiling tools, and root cause analysis to efficiently track down bugs across any codebase or technology stack. Use when investigating bugs, performance issues, or unexpected behavior.

Provides 25 paid HTTP endpoints on Base mainnet that bill agents per call in USDC for web search, AI analysis, crypto and stock data, SEC filings, company intelligence, news, sentiment scoring, and a macro dashboard, returning structured JSON.

Perform astronomical data analysis with Astropy: coordinate transformations, unit conversions, FITS I/O, cosmological calculations, time handling, table operations, and WCS transformations.

Performs differential expression analysis on bulk RNA-seq or pseudo-bulk count matrices with QC, PCA, and contrast testing.

Search real-time news with bias scoring, get live stock/ETF/crypto data with AI analysis, price options with ML models, and synthesize balanced news perspectives via the Helium MCP server.

Three-phase vulnerability chain analysis — parallel agents find individual weaknesses, then a synthesis step identifies which combinations escalate to critical impact. Inspired by Strix (usestrix/strix) "Graph of Agents" pentesting model.

Performs a semantic epistemic review of Agent-Native Research Artifacts, scoring six dimensions and producing a constructive report with a recommendation.

CUDA kernel development, debugging, and performance optimization for Claude Code. Use when writing, debugging, or optimizing CUDA code, GPU kernels, or parallel algorithms. Covers non-interactive profiling with nsys/ncu, debugging with cuda-gdb/compute-sanitizer, binary inspection with cuobjdump, and performance analysis workflows. Triggers on CUDA, GPU programming, kernel optimization, nsys, ncu, cuda-gdb, compute-sanitizer, PTX, GPU profiling, parallel performance.

Trains machine learning models on genomic interval data from BED files, including region embeddings, single-cell ATAC-seq analysis, and consensus peak building.

Use `analysis-agent` to analyze permissions, secrets, sensitive data, trust boundaries, and injection; `task-agent` to implement controls; and `review-agent` to assess evidence. Skip self-review and no-trust-impact work.

Independent model QA expert who audits ML and statistical models end-to-end - from documentation review and data reconstruction to replication, calibration testing, interpretability analysis, performance monitoring, and audit-grade reporting.

Design and implement security zones and conduits for industrial automation and control systems per IEC 62443-3-2, including zone partitioning, firewall configuration, and validation through traffic analysis and penetration testing.

Process satellite imagery, perform GIS analysis, and apply spatial machine learning across 70+ geospatial topics with code examples in 8 programming languages.

Analyze images using Azure AI Vision SDK: generate captions, tags, detect objects, extract text (OCR), detect people, and suggest smart crops.

Build a multi-factor asset criticality scoring model to weight vulnerability prioritization based on business impact, data sensitivity, and operational importance.

Search and analyze news articles with media bias context, get balanced perspectives, access live stock/ETF/crypto data with AI analysis, and find memes by semantic meaning.

Detect splice donor and acceptor sites in DNA sequences using the Genomic Intelligence G0 BigBird transformer, via the hosted /v1/tasks/splice/predict API. Returns per-position site probabilities and called sites.

Large Language and Vision Assistant. Enables visual instruction tuning and image-based conversations. Combines CLIP vision encoder with Vicuna/LLaMA language models. Supports multi-turn image chat, visual question answering, and instruction following. Use for vision-language chatbots or image understanding tasks. Best for conversational image analysis.

Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational experiments, performing literature searches, or generating publication-ready papers in LaTeX format. Supports end-to-end research pipelines with customizable agent orchestration.

Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational experiments, performing literature searches, or generating publication-ready papers in LaTeX format. Supports end-to-end research pipelines with customizable agent orchestration.

Multi-agent board meeting protocol for strategic decisions. Runs a structured 6-phase deliberation: context loading, independent C-suite contributions (isolated, no cross-pollination), critic analysis, synthesis, founder review, and decision extraction. Use when the user invokes /cs:board, calls a board meeting, or wants structured multi-perspective executive deliberation on a strategic question.

Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational experiments, performing literature searches, or generating publication-ready papers in LaTeX format. Supports end-to-end research pipelines with customizable agent orchestration.

Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational experiments, performing literature searches, or generating publication-ready papers in LaTeX format. Supports end-to-end research pipelines with customizable agent orchestration.

Generate a MoonSpec implementation plan and design artifacts from a single-story spec. Use when the user asks to run or reproduce `/moonspec.plan`, create or update `plan.md`, produce `research.md`, `data-model.md`, `contracts/`, or `quickstart.md`, evaluate repo principles, define separate unit and integration test strategies, and perform repo-aware gap analysis before `/moonspec.tasks`.

This skill enables comprehensive control and inspection of the Chrome browser without extensions, utilizing the Chrome DevTools Protocol via chrome-devtools-mcp. Use it for advanced browser automation, performance analysis, debugging network requests, taking screenshots, and interacting with web pages. Triggers include explicit requests to browse, automate, debug, or analyze Chrome's behavior, or any task requiring headless/direct browser interaction.

TIGER v2 — Multi-scanner trading system for Hyperliquid perps via Senpi MCP. 5 signal patterns (BB compression breakout, BTC correlation lag, momentum breakout, mean reversion, funding rate arb), DSL v4 trailing stops, goal-based aggression engine, and risk guardrails. Configurable profit target over deadline. 12-cron architecture (10 TIGER + prescreener + ROAR meta-optimizer). Pure Python analysis. Requires Senpi MCP, python3, mcporter CLI, and OpenClaw cron system.

Causal inference framework for answering "does X cause Y?" beyond correlation. DoWhy (Microsoft Research) provides the identify-estimate-refute loop: define a causal graph (DAG), identify the causal effect using backdoor/frontdoor/instrumental variable criteria, estimate treatment effects with multiple estimators, and validate results with automated refutation tests. Use when: distinguishing causation from correlation, estimating treatment effects (ATE, ATT, CATE), designing and analyzing A/B tests with confounders, using instrumental variables, performing counterfactual reasoning ("what would have happened if..."), validating causal claims with sensitivity analysis, working with observational data where randomization is impossible, or any analysis where the question is "what is the CAUSAL effect of X on Y" rather than just "how do X and Y relate?"

Extract features from 1D signals using signalTimeFeatureExtractor, signalFrequencyFeatureExtractor, and signalTimeFrequencyFeatureExtractor. Use when computing time-domain features (amplitude, energy, shape factors), frequency-domain features (spectral location, power, bandwidth, PSD), or time-frequency features (spectral shape, instantaneous, ridges, wavelet, EMD-derived) on a per-frame basis. Use when the user asks to "extract features", "compute spectral features", "build a feature table for a classifier", "get per-frame statistics", "run feature extraction on this signal", or describes a vibration / biosignal / radar / sensor signal needing features for downstream ML or analysis. Includes optional GPU acceleration via canUseGPU and gpuArray. Does not cover filter design, audio-specific feature extraction (use audioFeatureExtractor in Audio Toolbox instead), batch dataset orchestration, or 2D / image features.

Interpreted crypto wallet data for AI agents. Use when an agent needs portfolio values, token positions, DeFi positions, NFT holdings, transaction history, PnL data, token prices, charts, gas prices, swap quotes, or DApp information across 41+ chains. Zerion transforms raw blockchain data into agent-ready JSON with USD values, protocol labels, and enriched metadata. Supports x402 pay-per-request ($0.01 USDC on Base) and API key access. Triggers on mentions of portfolio, wallet analysis, positions, transactions, PnL, profit/loss, DeFi, token balances, NFTs, swap quotes, gas prices, or Zerion.

Via modeling: pads, antipads, ground return vias, GRV placement, and signal integrity for high-speed layer transitions. TRIGGER: user asks to model a via, design a via transition, place ground return vias, analyze via performance, or check signal integrity through layer transitions. Invoke BEFORE writing code — only viaSingleEnded exists (no viaDifferential), and the location format is non-obvious. SKIP: general signal integrity without vias (use matlab-analyze-em), transmission line design (use matlab-design-pcb-transmission-line), PDN analysis (use matlab-analyze-pcb-pdn), material/stackup setup only (use matlab-manage-pcb-material).