Results for “fasta”

Orchestrates end-to-end software development from scaffolding to deployment, covering frontend, backend, database, testing, and CI/CD workflows.

Python data validation using type hints and runtime type checking with Pydantic v2's Rust-powered core for high-performance validation in FastAPI, Django, and configuration management.

Build production-ready LLM applications, RAG systems, and intelligent agents with architecture design, model selection, and cost controls.

Kit de ferramentas para arquivos genômicos. Leia/escreva alinhamentos SAM/BAM/CRAM, variantes VCF/BCF, sequências FASTA/FASTQ, extraia regiões, calcule cobertura, para pipelines de processamento de dados NGS.

Master Python 3.12+ with modern features, async programming, performance optimization, and production-ready practices. Expert in the latest Python ecosystem including uv, ruff, pydantic, and FastAPI.

Provides reference documentation and code patterns for using Biopython to handle biological sequences, file formats, database access, alignments, structures, and phylogenetics.

Use when aligning short reads to a reference genome or indexed sequence database. Suitable for mapping FASTQ/FASTA reads in paired-end or single-end mode to produce SAM output.

Python logging with the standard library logging module and structlog. Covers log levels, handlers, formatters, structured logging, and production best practices for FastAPI/Django applications. USE WHEN: user mentions "python logging", "fastapi logging", "django logging", asks about "how to log in python", "python logging module", "logging configuration python" DO NOT USE FOR: Node.js logging - use `nodejs-logging` instead, Java logging - use `slf4j` or `logback`, structlog-specific - use `structlog` skill for deep dive

Write and review modern Python 3.12+ code with async patterns, performance optimization, and production-ready practices using the latest ecosystem tools.

Generates OpenAPI 3.1 documentation from an API codebase, auto-detecting frameworks, extracting routes and schemas, and setting up interactive docs.

Track ML experiments with open-source run logging, local or self-hosted dashboards, and media visualization using SwanLab.

Analyzes natural language requests to determine project type, select a tech stack, plan structure, and coordinate specialized agents for building full-stack applications.

Python language (3.10-3.14). Covers typing, async, and modern patterns. Use when writing Python applications. USE WHEN: user mentions "python", "type hints", "dataclasses", "async/await", asks about "asyncio", "context managers", "match statement", "walrus operator", "PEP 695", "type parameter", "generic" DO NOT USE FOR: FastAPI framework - use `backend-fastapi` skill instead DO NOT USE FOR: Django framework - use Django-specific skill DO NOT USE FOR: Package management - use `python-packaging` skill DO NOT USE FOR: Linting/type checking config - use `python-quality` skill

Use when you need to remove adapter sequences from high-throughput sequencing reads, trim low-quality bases, or filter reads by length. Supports single-end and paired-end FASTQ/FASTA input with error-tolerant adapter matching.

Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal processing, feature detection, peptide identification, and quantitative analysis. Apply when working with mass spectrometry data, analyzing proteomics experiments, or processing metabolomics datasets.

Read and write genomic alignment and variant files in Python with pysam (htslib bindings) — SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences, plus region extraction and per-base coverage/pileup. Use when scripting NGS data-processing pipelines that parse, filter, index, or compute coverage over BAM/CRAM/VCF files. Part of the AlterLab Academic Skills suite.

Make sure to use this skill whenever the user mentions anything related to Danish job searching, job listings, job vacancies, employment opportunities in Denmark, or the Danish government job portal — even if they don't mention jobnet.dk explicitly. Also invoke this skill for questions about specific job titles, occupations, employers, or regions in a Danish employment context. This skill covers the official Danish public job portal operated by STAR (Styrelsen for Arbejdsmarked og Rekruttering). Trigger phrases include: danish jobs, danish job search, jobnet, jobnet.dk, find job denmark, danish employment, job i danmark, job på jobnet, offentlige job, stillinger i det offentlige, public sector jobs denmark, government jobs denmark, STAR jobs, job ledige stillinger, ledig stilling, søg job, job opslag, job vacancy denmark, stillingopslag, jobopslag, sygepleje job, ingeniør job, lærer job, pædagog job, it-job denmark, jobs in copenhagen, jobs in aarhus, jobs in odense, deltidsjob, fuldtidsjob, fastansættelse, t