Results for “biorxiv”

Search 10 academic literature APIs for papers, preprints, citations, and open-access full text with reproducible provenance.

Runs chest X-ray reasoning smoke tests using the NV-Reason-CXR-3B model via local inference or a public Hugging Face Space API.

Submits and tracks protein-testing experiments on the Adaptyv Bio Foundry cloud lab (wet-lab validation), and optimizes protein sequences before submission with computational tools (NetSolP, SoluProt, SolubleMPNN, ESM). Use when designing proteins that need wet-lab validation - binding/affinity screening, expression testing, thermostability, or fluorescence assays - or when submitting experiments to the Foundry API, browsing the target catalog, tracking experiment status, retrieving results, or pre-screening sequences for solubility/expression. Triggers on "Adaptyv", "Foundry API", "cloud lab", "biolayer interferometry / BLI", "wet-lab validation". Part of the AlterLab Academic Skills suite.

Biome - Fast all-in-one toolchain for web projects (linter + formatter in Rust, 100x faster than ESLint)

Expert en biotechnologies avancées (bioinformatics, genomics, CRISPR, drug discovery, DZ research)

Chat with Grok models via xAI API. Supports Grok-3, Grok-3-mini, vision, and more.

Nx build system and monorepo tools. Advanced task orchestration, generators, and plugins. Use for complex enterprise monorepos with multiple technologies. USE WHEN: user mentions "Nx", "nx.json", "Nx monorepo", "Nx generators", asks about "Nx workspace", "affected commands", "module boundaries" DO NOT USE FOR: Turborepo (use turborepo skill), simple monorepos (Turborepo is simpler), single-package projects

Use when you need to compress or decompress files using BGZF (Blocked GNU Zip Format), create BGZF indexes for random access, or prepare bioinformatics files for tabix indexing.

Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).

Plataforma de laboratório em nuvem para testes e validação automatizados de proteínas. Use ao projetar proteínas e precisar de validação experimental incluindo ensaios de ligação, testes de expressão, medições de estabilidade térmica, ensaios de atividade enzimática ou otimização de sequências de proteínas. Use também para submeter experimentos via API, rastrear status de experimentos, baixar resultados, otimizar sequências de proteínas para melhor expressão usando ferramentas computacionais (NetSolP, SoluProt, SolubleMPNN, ESM), ou gerenciar workflows de design de proteínas com validação em laboratório úmido.

Search arXiv papers by keyword, author, category, or ID.

Submit protein sequences to the Adaptyv Bio Foundry for experimental characterization (binding, thermostability, expression, fluorescence) and retrieve results via API or Python SDK.

Query 40+ bioinformatics services (UniProt, KEGG, ChEMBL, Reactome) with a unified Python interface for cross-database analysis, identifier mapping, and sequence analysis.

Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.

You are an expert in MobX, the simple and scalable state management library based on transparent reactive programming. You help developers build React applications with observable state, automatic tracking of dependencies, computed values, actions for state mutations, and reactions for side effects — providing a natural, class-based or functional approach where the UI automatically updates when state changes without manual subscriptions.

Advises against testosterone therapy in men with biochemical recurrence after prostate cancer treatment due to very limited data and potential risk of progression. Consider when a patient has a rising PSA after definitive therapy and the clinician evaluates testosterone for hypogonadism, questioning whether TTh is safe in BCR.

Search arXiv papers by keyword, author, category, or ID.

每日从 arXiv 拉取新论文，过滤相关性，auto-ingest 高优先级论文，检测 SOTA 更新

Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.

Use when parsing, extracting, or converting XML data from NCBI Entrez or other bioinformatics sources into tab-delimited tables. Use for selecting specific elements, filtering records, and restructuring hierarchical XML into flat formats for downstream analysis.

Run full computational-pathology workflows with PathML — whole-slide-image (WSI) analysis across 160+ slide formats, multiplexed immunofluorescence (CODEX, Vectra, MERFISH), nucleus segmentation/classification (HoVer-Net, HACTNet), tissue- and cell-graph construction, HDF5 dataset management, and deep-learning model training on pathology data. Use when the user builds end-to-end deep-learning pathology pipelines, analyzes multiplexed or spatial-proteomics slides, or segments nuclei. For lightweight H&E slide preprocessing, tissue masking, or plain Random/Grid/Score tile extraction prefer alterlab-histolab instead. Part of the AlterLab Academic Skills suite.

Submit protein sequences to the Adaptyv Bio Foundry for experimental characterization (binding, thermostability, expression, fluorescence) and retrieve results using the REST API or Python SDK.

Wydruki i raporty w Soneta (enova365, Triva) — pliki .repx (DevExpress XtraReports, serializowany XML). Sięgaj przy KAŻDYM zadaniu z wydrukiem/raportem: faktura, dokument, deklaracja, lista, zestawienie; utworzenie, przeróbka lub poprawa .repx (też z załącznika); pytanie „jak w wydruku zrobić X”. Typowe X: podpięcie danych (lista, dokument z pozycjami, master-detail, podraport), podział stron, kolumna Lp, tabele, grupowanie i sumy, formatowanie warunkowe, kwoty, nakładanie wartości na skan formularza, nagłówek/stopka/podpisy, arkusz stylów (.repss), rejestracja wydruku. Wyzwalają też pojęcia: XtraReportsLayoutSerializer, StyleSheetSerializer, pasma (DetailBand/DetailReportBand/GroupHeaderBand/SubBand), kontrolki (XRLabel/XRTable/AmountLabel), BusinessDataSource/DataKind, ReportContext, ExpressionBindings/Summary/CalculatedFields/FilterString, [assembly: DxReport], ReportSnippet/[DxBind]. Wystarczy „wydruk”, „raport” lub „.repx” w kontekście Soneta. NIE dla: business.xml, form.xml, SQL, Excel, Word .dotx.

Process and analyze tabular datasets larger than RAM using lazy, out-of-core DataFrames, with fast aggregations, visualization, and machine learning integration.

Use when building, indexing, or querying local XML record archives from NCBI Entrez databases, creating inverted indices, or managing PubMed local caches.

Search and retrieve preprints from arXiv via the Atom API by keywords, authors, arXiv IDs, date ranges, or subject categories. Use when finding or fetching papers in physics, mathematics, computer science, quantitative biology, quantitative finance, statistics, electrical engineering, or economics, or resolving an arXiv ID to its metadata and PDF. Part of the AlterLab Academic Skills suite.

Privacy-respecting metasearch using your local SearXNG instance. Search the web, images, news, and more without external API dependencies.

Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.

Complete PortSwigger deep-dive with exact payloads for every lab variant including zero-day techniques

Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.

Maps the current VIX value to a 5-tier fear-thermometer classification with strategy hints for options sellers, including 1-year percentile and distribution data.

飞书视频会议：查询会议记录、获取会议纪要产物（总结、待办、章节、逐字稿）。1. 查询已经结束的会议数量或详情时使用本技能(如昨天 | 上周 | 今天已经开过的会议等场景)，查询未开始的会议日程使用 lark-calendar 技能。2. 支持通过关键词、时间范围、组织者、参与者、会议室等筛选条件搜索会议记录。3. 获取或整理会议纪要时使用本技能。

Generating and auditing personal dev environment configs (zsh/tmux/neovim/ghostty) and automating the macOS desktop via AppleScript/JXA (Finder, Mail, Safari). Use for dotfiles or Apple Events.

Run computational biology tools for protein structure prediction, design, docking, and molecular dynamics on managed cloud GPUs via REST API or MCP server.

Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide formats. For simple tile extraction from H&E slides, histolab may be simpler.