Results for “fba”

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.

Maps the US federal privacy landscape including sectoral laws (HIPAA, GLBA, FERPA, COPPA, FCRA, ECPA, VPPA), FTC Section 5 enforcement, proposed federal comprehensive legislation, and the interaction between federal and state privacy regimes. Keywords: federal privacy, HIPAA, GLBA, FERPA, COPPA, FCRA, FTC, sectoral, preemption.

Interact with Cat Town, a Farcaster-native game world on Base, covering KIBBLE staking, world state, fishing drops, competitions, raffles, boutique, gacha, and tokenomics.

Manages the ABA and ABC board games, drawing numbered boards and enforcing win conditions.

Orchestrate token-heavy research, coding, and testing by delegating bounded tasks to cheaper subagents while reserving Claude Fable for architecture, synthesis, and final review.

Build custom fuzzers with a modular Rust library, supporting advanced mutation strategies, custom feedback mechanisms, and non-standard target architectures.

Flash FPGA firmware on HSB Lattice boards and Leopard Imaging VB1940 cameras connected to NVIDIA devkits, with safety checks and multi-step upgrade/downgrade procedures.

Tests APIs for Broken Function Level Authorization (BFLA) vulnerabilities where regular users can invoke administrative functions or access privileged API endpoints by directly calling them.

Detect and respond to Adversary-in-the-Middle (AiTM) phishing attacks that use reverse proxy kits like EvilProxy, Evilginx, and Tycoon 2FA to bypass MFA and steal session tokens.

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.

Monthly P&L, cashflow forecast, runway calculation, and top movers. Investor-ready Gamma deck plus Slack summary, archived to Notion. Runs monthly on a 1st-of-month cron schedule.

Runs NCBI BLAST+ 2.17.0 sequence searches from the command line: makeblastdb (with -parse_seqids), blastn/blastp/blastx/tblastn with tabular -outfmt 6/7 for parsing, correct -task choice (megablast vs blastn vs blastn-short), -taxids/-negative_taxids taxonomic scoping, and -mt_mode multithreading; plus a DIAMOND blastp --ultra-sensitive path for large protein searches. Warns that -max_target_seqs is a heuristic keep-count, not a top-N best-hits filter. Use when the user wants command-line BLAST, makeblastdb, a local BLAST database, blastn/blastp/blastx/tblastn searches, or DIAMOND protein search. For the Bio.Blast web NCBIWWW API prefer alterlab-biopython; for quick one-liner database lookups prefer alterlab-gget. Part of the AlterLab Academic Skills suite.

LibAFL is a modular fuzzing library for building custom fuzzers. Use for advanced fuzzing needs, custom mutators, or non-standard fuzzing targets.

NBA Stats API skill. Use when working with NBA Stats for playerdashptshots, leagueleaders, playerdashptreb. Covers 91 endpoints.

Analyzes requirements and produces four artifact files: requirements, user stories, acceptance criteria, and business rules, with optional SRS workflow integration.

Build and run custom fuzzers with LibAFL, a modular Rust fuzzing library, including drop-in libFuzzer replacement and custom component configuration.

Screen products for FDA, EPA, USDA, CPSC, FCC, and other government agency requirements using AskRosetta. Use when checking regulatory compliance for US imports.

Analyzes requirements and produces four artifact files: requirements.md, user-stories.md, acceptance-criteria.md, and business-rules.md, with optional loading from SRS workflow artifacts.

Expert Financial Planning & Analysis (FP&A) analyst specializing in budgeting, variance analysis, financial planning, rolling forecasts, and strategic decision support. Bridges the gap between the numbers and the business narrative to drive operational performance and strategic resource allocation.

Evaluates the faithfulness of abstractive summaries by generating questions from summary sentences and verifying if the answers can be extracted from the source document, reporting Pearson and Spearman correlations with human judgments.

Scores any US stock ticker through Warren Buffett's four-lens framework (business simplicity, moat, management, valuation) and returns a weighted HOLDABLE/WATCHABLE/AVOID verdict.

Build and analyze genome-scale constraint-based metabolic models with COBRApy — flux balance analysis (FBA), flux variability analysis (FVA), gene and reaction knockouts, flux sampling, and SBML model I/O. Use when simulating metabolic networks, predicting growth or knockout phenotypes, or running systems-biology and metabolic-engineering analyses on SBML genome-scale models. Part of the AlterLab Academic Skills suite.

Modelagem metabólica baseada em restrições (COBRA). FBA, FVA, knockouts de genes, amostragem de fluxo, modelos SBML, para análise de biologia de sistemas e engenharia metabólica.

Firm-fixed-price cost buildup mirroring 1102 IGCE FFP wrap-rate math (BLS OEWS + GSA CALC+ + GSA Per Diem). USE WHEN the user asks to "build an FFP IGCE", "wrap rate buildup", "FFP cost estimate", "layer fringe overhead G&A fee", "how should we price this FFP task order", or "IGCE parity for our bid". Pulls labor categories from pursuit vault or defaults, stacks fringe/overhead/G&A/fee, exports JSON + XLSX to Studio. DO NOT USE FOR T&M/LH pricing (`igce-builder-lh-tm`), cost-reimbursement (`igce-builder-cr`), OT milestones (`ot-prototype-strategist`), or obligation intel (`competitive-intel`).

Use when converting GenBank format (.gbf) files to FASTA format (.fsa) as part of sequence data preprocessing

Drafts FinCEN Suspicious Activity Reports (Form 111) for BSA/AML regulatory filing. Compiles subject identification, transaction timelines, red-flag analysis, and activity classifications. Use when a financial institution detects suspicious transactions requiring mandatory SAR filing, continuing activity reports, or BSA compliance documentation.

Perform coverage-guided fuzzing of compiled binaries using AFL++ to discover memory corruption, crashes, and security vulnerabilities.

Query the openFDA API for drugs, medical devices, adverse event reports, recalls, regulatory submissions (510k, PMA), and substance identification (UNII). Use when searching FDA safety data, pharmacovigilance and adverse-event signals, device clearances, drug labels, or recall records for regulatory data analysis and safety research. Part of the AlterLab Academic Skills suite.

Development with Fpga: tools and best practices

Agent profile for review pricing, invoices, subscriptions, entitlements, revenue logic, tax-sensitive flows, and billing UX. Use when Codex needs a specialist agent perspective for planning, implementation, review, debugging, validation, or handoff in this domain.

This skill recommends obtaining a baseline BMD measurement by DXA in adolescents or women with functional hypothalamic amenorrhea (FHA) and concurrent polycystic ovary syndrome (PCOS) who have six or more months of amenorrhea, and earlier if there is history or suspicion of severe nutritional deficiency, other energy deficit states, or skeletal fragility. Use when a clinician states, “She has PCOS and no periods for seven months—let’s get a DXA,” or similar triggers such as “Check BMD in PCOS+FHA after six months amenorrhea” or “Order DXA sooner due to low weight.”

Orchestrates a full software delivery pipeline by sequentially loading and executing seven role-specific skills (BA, TechLead, PM, BE Dev, FE Dev, Tester, QA/QC), managing project configuration, task tracking, and gate checks.