Results for “scvelo”

Run RNA velocity analysis with scVelo on single-cell RNA-seq data — estimate cell-state transitions from spliced/unspliced mRNA dynamics, infer trajectory direction, compute latent time, and identify driver genes. Use when adding directionality to trajectories or studying differentiation dynamics from spliced/unspliced layers (velocyto/STARsolo output); for the general QC, clustering, UMAP, and differential-expression analysis pipeline prefer alterlab-scanpy instead, and for .h5ad data-structure I/O and layer wrangling prefer alterlab-anndata instead. Part of the AlterLab Academic Skills suite.

Create and present web-based slidedecks for developers using Slidev with Markdown, Vue components, code highlighting, animations, and interactive features.

Create and present web-based slidedecks for developers using Slidev with Markdown, Vue components, code highlighting, animations, and interactive features. Use when building technical presentations, conference talks, code walkthroughs, teaching materials, or developer decks.

Scaffold the local env file with required variable stubs from .env.example and code, open it for the user to fill, and verify completeness by key names only — never reading secret values

Create and present web-based slidedecks for developers using Slidev with Markdown, Vue components, code highlighting, animations, and interactive features.

Create and present web-based slide decks using Slidev with Markdown, Vue components, code highlighting, animations, and interactive features. Ideal for technical presentations, conference talks, code walkthroughs, teaching materials, or developer decks.

Scaffolds or audits Zod-validated environment variables for a Next.js service, including src/lib/env.ts, .env.example, scripts/check-env.ts, and pnpm check:env. Use when adding env vars, auditing process.env usage, or aligning with deployment secrets.

Svelte 5 - Reactive UI framework with compiler magic, Runes API, SvelteKit full-stack framework, SSR/SSG, minimal JavaScript

Provides deep generative models for single-cell omics analysis, including probabilistic batch correction, transfer learning, differential expression, and multi-modal integration.

Scaffolds a new ClawBio skill from a JSON/YAML spec or interactively, generating SKILL.md, Python skeleton, tests, and updating the catalog.

Scaffold, install, and compose shadcn-vue components built on Reka UI v2, including Vue variants, form patterns with vee-validate/Zod, and adaptation of existing components.

SNLI-VE: Visual Entailment Dataset

Secure-by-default environment variable management for Claude Code sessions.

This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.

Operates Scaleway cloud resources through the scw CLI, covering instances, images, object storage, Kubernetes, and databases.

Train LLMs with reinforcement learning using verl (Volcano Engine RL), supporting RLHF, GRPO, PPO, and other algorithms for scalable post-training with flexible infrastructure backends.

Generate videos using Google Veo models via the inference.sh CLI, with support for multiple Veo versions and cinematic prompts.

Secure-by-default environment variable management for Claude Code sessions.

Secure-by-default environment variable management for Claude Code sessions.

CLI for Google OSV database. Query vulnerabilities for packages, scan local projects for vulnerable dependencies. **Dependency**: This is an x-cmd module. Install x-cmd first (see x-cmd skill). **Required Tool**: Install osv-scanner for project scanning (see https://github.com/google/osv-scanner).

Secure-by-default environment variable management for Claude Code sessions.

Bootstraps a local Python environment for a skill package by creating a venv and installing dependencies with a stdlib-only script.

Audit environment-variable hygiene and secrets safety across local development and production with practical scanning, drift awareness, and rotation readiness.

Secure-by-default environment variable management for Claude Code sessions.

vgademo - Sizecoded Demoscene Asm Generator

Generates backend source code files, .env.example, and pr-description.md from BA, TechLead, and PM artifacts, following a configurable seniority level.

Observability and reliability engineer — SLOs, alerting, instrumentation, and incident response.

Implements backend source code from BA, TechLead, and PM artifacts, generating files, .env.example, and pr-description.md while enforcing security rules.

Secure-by-default environment variable management for Claude Code sessions.

Secure-by-default environment variable management for Claude Code sessions.

Development with Sve: tools and best practices

Defines and applies design tokens for Vue 3 + shadcn-vue projects, including CSS variables, Tailwind configuration, and usage patterns.

Environment variable validation, security scanning, and management for Next.js, Vite, React, and Node.js applications