Source instructions in README.md and repo scripts.
1---2name: mage-antibody-generator3description: Ab seq forge4license: MIT5---67<!--8# COPYRIGHT NOTICE9# This file is part of the "Universal Biomedical Skills" project.10# Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>11# All Rights Reserved.12#13# This code is proprietary and confidential.14# Unauthorized copying of this file, via any medium is strictly prohibited.15#16# Provenance: Authenticated by MD BABU MIA1718-->192021# MAGE (Monoclonal Antibody Generator)2223Run the MAGE antibody generation workflow to propose antigen-conditioned antibody sequences for downstream structural validation.2425## Workflow261. **Prep env:** `cd repo` and install dependencies, then point to GPU if available.272. **Run generator:** `python generate_antibodies.py --antigen_sequence <SEQ> --num_candidates N --output_dir ./results`.283. **Collect outputs:** Provide FASTA paths + metadata, optionally translate into JSON manifest.294. **Recommend validation:** Suggest AlphaFold/Rosetta checks and wet-lab follow-up.3031## Guardrails32- Never imply binding efficacy without structural/experimental confirmation.33- Track model version + seeds to ensure reproducibility.34- Encourage downstream filtering (liability motifs, developability metrics).3536## References37- Source instructions in `README.md` and repo scripts.383940<!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE -->
Run npx skillmds@latest add fridrichmethod/mage-antibody-generator in your terminal (requires Node.js), paste this page's agent-chat prompt into Claude, Cursor, or any MCP-connected agent, or download the SKILL.md file and copy it into your agent's skills directory.
Ab seq forge It is listed under Coding & Dev Tools on SkillMD.
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