Ranking: Execute TrialGPT ranking script to score each trial and emit explanations.
Handoff: Export ranked list + structured criteria for trial-eligibility-agent.
Guardrails
Refresh ClinicalTrials.gov metadata regularly to avoid stale trials.
Label scores as AI-generated suggestions pending clinician validation.
Retain prompt/config metadata for audit trails.
References
Detailed usage instructions and repo layout live in README.md.
Coordinate with Skills/Clinical/Trial_Eligibility_Agent for criterion-level review.
1---2name: trialgpt-matching3description: Trial shortlist4license: MIT5---67<!--8# COPYRIGHT NOTICE9# This file is part of the "Universal Biomedical Skills" project.10# Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>11# All Rights Reserved.12#13# This code is proprietary and confidential.14# Unauthorized copying of this file, via any medium is strictly prohibited.15#16# Provenance: Authenticated by MD BABU MIA1718-->192021# TrialGPT Matching2223Run the locally checked-out TrialGPT pipeline to retrieve, rank, and explain candidate trials for a patient before deeper eligibility review.2425## Inputs26- Patient summary (structured JSON or free text) with condition keywords.27- Optional filters: geography, phase, intervention, biomarker.28- Up-to-date ClinicalTrials.gov dump or API access.2930## Outputs31- Ranked trial table with NCT ID, title, score, and short justification.32- Parsed inclusion/exclusion text ready for downstream eligibility agents.33- Missing data checklist (e.g., "ECOG not provided").3435## Workflow361. **Setup:** `cd repo && pip install -r requirements.txt` (or reuse env).372. **Trial retrieval:** Run TrialGPT retriever to pull candidate trials for the indication.383. **Criteria parsing:** Convert eligibility blocks to structured criteria JSON.394. **Patient profiling:** Summarize patient facts (labs, prior therapies, biomarkers).405. **Ranking:** Execute TrialGPT ranking script to score each trial and emit explanations.416. **Handoff:** Export ranked list + structured criteria for `trial-eligibility-agent`.4243## Guardrails44- Refresh ClinicalTrials.gov metadata regularly to avoid stale trials.45- Label scores as AI-generated suggestions pending clinician validation.46- Retain prompt/config metadata for audit trails.4748## References49- Detailed usage instructions and repo layout live in `README.md`.50- Coordinate with `Skills/Clinical/Trial_Eligibility_Agent` for criterion-level review.515253<!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE -->
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FridrichMethod (@fridrichmethod) published this skill. Their other Agent Skills are listed on their SkillMD profile.