brycewang-stanford
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- ▌ Deep Searcher Guide · brycewang-stanfordOpen deep research alternative for private data with vector search
- ▌ Khoj Research Guide · brycewang-stanfordAI second brain for deep research and personal knowledge management
- ▌ Action Research Guide · brycewang-stanfordDesign and conduct action research and participatory studies
- ▌ Grounded Theory Guide · brycewang-stanfordApply grounded theory methodology to develop theory from data
- ▌ Repository Harvesting Guide · brycewang-stanfordHarvest metadata from open repositories using OAI-PMH protocol
- ▌ Academic Citation Manager · brycewang-stanfordManage academic citations across BibTeX, APA, MLA, and Chicago formats
- ▌ Zotero Better Notes Guide · brycewang-stanfordGuide to Zotero Better Notes for comprehensive note-taking in research
- ▌ Abstract Writing Guide · brycewang-stanfordCraft structured research abstracts that maximize clarity and journal acceptance
- ▌ Overleaf Collaboration Guide · brycewang-stanfordGuide to collaborative LaTeX editing with Overleaf
- ▌ Graphical Abstract Guide · brycewang-stanfordCreate SVG graphical abstracts for journal paper submissions
- ▌ Econometrics Julia · brycewang-stanfordJulia-based econometric and structural estimation for computationally intensive tasks. Use for structural models, maximum likelihood, GMM, numerical optimization, simulations, and high-performance computing. Covers DataFrames.jl, FixedEffectModels.jl, Optim.jl, and performance optimization.
- ▌ Education Data Source Ccd · brycewang-stanford bundleCCD — federal universe of all U.S. public K-12 schools (~100K) and districts (~18K). Enrollment, staffing, finance, directory data (1986-present). Use for public school analysis by grade/race/sex. Public only; excludes private and postsecondary.
- ▌ Education Data Source Fsa · brycewang-stanford bundleFSA — Title IV aid at institution level (~5,500 institutions, 1999-2021). Pell Grants, Direct/PLUS loans, campus-based aid, financial responsibility scores, 90/10 metrics. Use for aid distribution, loan volume, or for-profit analysis. By unitid.
- ▌ Algorithm Visualizer Guide · brycewang-stanfordGuide to Algorithm Visualizer for interactive algorithm exploration
- ▌ Mostly Harmless Guide · brycewang-stanfordReplication code and guide for Mostly Harmless Econometrics methods
- ▌ Stata Reference Guide · brycewang-stanfordComprehensive Stata reference covering syntax, econometrics, and 20+ packages
- ▌ Modeling Strategy Guide · brycewang-stanfordStrategic statistical modeling, experimentation, and causal inference
- ▌ Survival Analysis Guide · brycewang-stanfordConduct Kaplan-Meier, Cox regression, and time-to-event analyses
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- ▌ Strategic Management Guide · brycewang-stanfordFrameworks for strategic planning, resource allocation, and organizational an...
- ▌ Gis Remote Sensing Guide · brycewang-stanfordGIS analysis and remote sensing workflows for geospatial research applications
- ▌ Satellite Remote Sensing · brycewang-stanfordSatellite imagery analysis and remote sensing for earth science research
- ▌ Digital Humanities Guide · brycewang-stanfordComputational methods for humanities research including text mining and netwo...
- ▌ Ethical Philosophy Guide · brycewang-stanfordApplied ethics research methods and major ethical frameworks
- ▌ Computational Physics Guide · brycewang-stanfordComputational physics methods, simulations, and research tools
- ▌ Interlibrary Loan Guide · brycewang-stanfordAccess papers through interlibrary loan and document delivery services
- ▌ Crossref Event Data API · brycewang-stanfordTrack scholarly mentions across the web via Crossref Event Data
- ▌ Doi Content Negotiation · brycewang-stanfordRetrieve structured metadata from any DOI via HTTP content negotiation
- ▌ Orcid Integration Guide · brycewang-stanfordSet up and leverage ORCID for researcher identification and profiles
- ▌ Database Comparison Guide · brycewang-stanfordCompare major academic databases and when to use each for research
- ▌ Gpt Researcher Guide · brycewang-stanfordAutonomous agent for comprehensive deep research on any topic
- ▌ Meta Synthesis Guide · brycewang-stanfordConduct qualitative meta-synthesis and evidence synthesis methods
- ▌ Results Analysis · brycewang-stanford bundleThis skill should be used when the user asks to "analyze experimental results", "run strict statistical analysis", "compare model performance", "generate scientific figures", "check significance", "do ablation analysis", or mentions interpreting experiment data with rigorous statistics and visualization. It focuses on strict analysis bundles, not Results-section prose.
- ▌ Running Placebo Analysis · brycewang-stanford bundlePerforms placebo-in-time sensitivity analysis with hierarchical null model and optional Bayesian assurance. Use when checking model robustness, verifying lack of pre-intervention effects, or estimating study power.
- ▌ Thematic Analysis · brycewang-stanford bundleConduct rigorous thematic analysis (TA) of qualitative data following Braun and Clarke's (2006) six-phase framework. Use whenever the user mentions 'thematic analysis', 'TA', 'Braun and Clarke', 'qualitative coding', 'identifying themes', or asks for help analysing interviews, focus groups, open-ended survey responses, or transcripts to identify patterns. Also trigger for questions about inductive vs theoretical coding, semantic vs latent themes, essentialist vs constructionist epistemology, building a thematic map, or writing up a qualitative findings section. Covers all six phases, the four upfront analytic decisions, the 15-point quality checklist, and the five common pitfalls. Produces a Word document write-up and an annotated thematic map. Does NOT cover IPA, grounded theory, discourse analysis, conversation analysis, or narrative analysis — use a different method for those.
- ▌ Citation Check · brycewang-stanfordAudit in-text/reference parity, DOIs, claim support, and citation style.
- ▌ Journal Review · brycewang-stanfordDraft a senior peer-review report on a social-science manuscript.
- ▌ Topic Modeling · brycewang-stanfordStructural topic modeling: STM spec, topic count, coherence-exclusivity.
- ▌ Did Reviewer · brycewang-stanford双重差分(DID)实证审查Skill。做DID分析前必须检查平行趋势假设、画图可视化、报告违背情况。触发词：DID审查/双重差分检查/平行趋势/DiD reviewer/difference-in-differences
- ▌ Academic Paper Search · brycewang-stanford bundleThis skill should be used when the user asks to "search for academic papers", "find working papers on SSRN", "look up a DOI", "download paper PDF", "check open access availability", "search NBER papers", "find arXiv preprints", or "search CrossRef". Provides unified search, metadata retrieval, and PDF download across arXiv, NBER, SSRN, CrossRef, OpenAlex, Unpaywall, and Semantic Scholar. Covers economics, finance, social science, CS/AI, and all academic disciplines.
- ▌ Research Grants · brycewang-stanford bundleWrite competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.
- ▌ Checking Chembl For Structured Sar Data · brycewang-stanfordCheck if medicinal chemistry papers are in ChEMBL database to access curated bioactivity data
- ▌ Workflows Plan · brycewang-stanfordTransform research descriptions into well-structured implementation plans following project conventions
- ▌ Workflows Work · brycewang-stanford bundleExecute research implementation plans efficiently while maintaining estimation quality and finishing features
- ▌ Strategize · brycewang-stanfordDesign identification strategy or pre-analysis plan. Dispatches Strategist (proposer) and strategist-critic (validator). Replaces /identify and /pre-analysis-plan.
- ▌ Review Pap · brycewang-stanfordRun a 6-agent pre-submission review of a pre-analysis plan (PAP) for a specified registration target or journal
- ▌ Bib Check · brycewang-stanfordCross-checks citation keys in index.qmd against references.bib, reporting missing, orphaned, and duplicate entries. Use when verifying citations.
- ▌ Check Env · brycewang-stanfordVerifies required tools (Quarto, uv, Python, R, Stata, TeX) and Jupyter kernels are installed. Use when setting up or troubleshooting.
- ▌ Paper Self Review · brycewang-stanford bundleThis skill should be used when the user asks to "review paper quality", "check paper completeness", "validate paper structure", "self-review before submission", or mentions systematic paper quality checking. Provides comprehensive quality assurance checklist for academic papers.
- ▌ Research Ideation · brycewang-stanford bundleThis skill should be used when the user asks to "brainstorm research ideas", "use 5W1H framework", "identify research gaps", "conduct gap analysis", "start research project", "conduct literature review", "define research question", "select research method", "plan research", or mentions research project initiation phase. Provides comprehensive guidance for research startup workflow from idea generation to planning.
- ▌ Skill Development · brycewang-stanford bundleThis skill should be used when the user asks to create a new skill, repair an existing skill, improve trigger descriptions, reorganize skill structure, or make a Claude skill more reusable and internally consistent.
- ▌ Verification Loop · brycewang-stanford bundleThis skill should be used when the user asks to "verify code", "run verification", "check quality", "validate changes", or before creating a PR. Provides comprehensive verification including build, type check, lint, tests, security scan, and diff review.
- ▌ Commit · brycewang-stanfordStage, commit, and push changes for the sewage project. Creates a branch, commits with a descriptive message, pushes, and optionally creates a PR. This skill should be used when asked to "commit", "save changes", "push", or "create a PR".
- ▌ Comm Lit Review · brycewang-stanford bundleCommunications-domain literature review and related-work search with database-aware source control. Use when the task is about communications, wireless, networking, satellite/NTN, Wi-Fi, cellular, transport protocols, congestion control, routing, scheduling, MAC/PHY, rate adaptation, channel estimation, beamforming, or communication-system research and the user wants papers, prior art, a survey, related work, or a landscape summary. Prioritize IEEE Xplore and ScienceDirect, prefer formal publications over preprints, and separate foundational work from recent progress.
- ▌ Choosing Causalpy Methods · brycewang-stanford bundleChoose the appropriate CausalPy experiment class from a causal question, data structure, treatment assignment, and identification assumptions. Use before writing analysis code when the method is not yet settled.
- ▌ Conjoint Design · brycewang-stanford bundleDesign conjoint experiments: attributes, power, AMCE/AMIE estimation.
- ▌ List Experiment · brycewang-stanford bundleDesign and diagnose list experiments (item count technique).
- ▌ Research Intake · brycewang-stanford bundleBidirectional review — THE entry point for every research engagement. Reviews everything the researcher has (data, docs, code, instruments) and produces two outputs: (1) a gap analysis showing what their project needs to meet gold standards, and (2) suite-learning findings identifying what our skill suite can learn from what they brought. Runs at the START of every engagement and in lighter form at session END. Use when the user says "I have data," "review what I have," "where do I start," "look at my project," "what am I missing," or at the beginning of any research engagement. Also triggers on "intake," "gap analysis," "audit my materials," "what should I improve."
- ▌ Codebook Pass · brycewang-stanford调查数据清洗Skill。处理调查数据（CGSS/CHIP/CSS等）时的标准化清洗流程，包括缺失值处理、变量编码统一、数据异常值检测。触发词：数据清洗/调查数据/codebook/数据清洗流程/问卷数据处理
- ▌ Econ Reviewer · brycewang-stanford经济学顶刊标准审稿Skill。按AER/QJE/Econometrica/JPE顶刊标准审查论文输出（图表+回归表），列出潜在致命缺陷。触发词：顶刊审稿/论文审查/econ reviewer/经济学期刊标准/PR
- ▌ New Project · brycewang-stanfordFull research pipeline from idea to paper. Orchestrates all phases — discovery, strategy, analysis, writing, peer review, and submission. Use when starting a new research project from scratch.
- ▌ Academic Pipeline · brycewang-stanford bundleOrchestrator for the full academic research pipeline: research -> write -> integrity check -> review -> revise -> re-review -> re-revise -> final integrity check -> finalize. Coordinates deep-research, academic-paper, and academic-paper-reviewer into a seamless 9-stage workflow with mandatory integrity verification, two-stage peer review, and reproducible quality gates. Triggers on: academic pipeline, research to paper, full paper workflow, paper pipeline, end-to-end paper, research-to-publication, complete paper workflow.
- ▌ Data Audit · brycewang-stanfordScans notebooks for data file references and verifies each file exists on disk. Use when checking for broken data paths.
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- ▌ Post Ocr Cleanup · brycewang-stanford bundleClean post-OCR text: correction, QA, multilingual handling, provenance.
- ▌ Vlm Ocr Pipeline · brycewang-stanford bundleVLM-based OCR pipeline: model selection, prompts, architecture, evaluation.
- ▌ Tidyverse Patterns · brycewang-stanfordModern tidyverse patterns for R including pipes, joins, grouping, purrr, and stringr. Use when writing tidyverse R code.
- ▌ Nber Working Papers API · brycewang-stanfordAccess NBER working papers and economic research datasets
- ▌ Causal Inference · brycewang-stanford bundleThis skill covers causal inference methods in observational and quasi-experimental settings. Use when the user is implementing, choosing between, or debugging causal identification strategies — including instrumental variables, difference-in-differences, regression discontinuity, synthetic control, or matching estimators. Triggers on "causal effect", "identification strategy", "instrumental variable", "2SLS", "GMM", "difference-in-differences", "DiD", "staggered treatment", "regression discontinuity", "RDD", "synthetic control", "matching", "propensity score", "IPW", "AIPW", "doubly robust", "LATE", "ATT", "ATE", "parallel trends", "exclusion restriction", "first stage", "weak instruments", or "endogeneity".
- ▌ Submission Guide · brycewang-stanford bundleThis skill covers academic journal submission, referee responses, and revision management. Use when the user is preparing a manuscript for submission, formatting for a specific journal, responding to referees, or managing revisions. Triggers on "submit", "referee", "revision", "R&R", "response letter", "journal", "formatting", "submission", "resubmit", "cover letter", "referee report", "revise and resubmit".
- ▌ Workflows Ideate · brycewang-stanfordDivergent research ideation — generate many candidate directions, then adversarially filter to the strongest
- ▌ Workflows Review · brycewang-stanford bundleRun multi-agent econometric review on estimation code, identification arguments, and research artifacts
- ▌ Review Grant · brycewang-stanfordRun a 6-agent pre-submission panel review for a grant proposal targeting a specified funder or program
- ▌ Review Paper · brycewang-stanfordRun a 6-agent pre-submission referee report for an academic paper targeting a specified journal
- ▌ Redistricting Analysis · brycewang-stanford bundleRedistricting analysis in R using the redistverse ecosystem. Use whenever the user is working with redist, redistmetrics, ggredist, geomander, adj, alarmdata, PL94171, censable, easycensus, tinytiger, baf, rict, or redistio. Covers the complete pipeline: Census and spatial data loading, adjacency graph construction, SMC/MCMC simulation, constraints (population balance, county splits, VRA compliance), convergence diagnostics, plan metrics (compactness, partisan fairness, splits), visualization, summary tables, and interactive plan drawing. Invoke whenever the user mentions redistricting, gerrymandering, district plans, simulation ensembles, or any redistverse package by name.
- ▌ Proof Architect · brycewang-stanford bundleStructured methodology for constructing and verifying mathematical proofs in statistical research
- ▌ Sensitivity Analyst · brycewang-stanfordSensitivity analysis frameworks and assumption-testing methods
- ▌ Methods Communicator · brycewang-stanfordEffective communication strategies for statistical methods
- ▌ Methods Paper Writer · brycewang-stanford bundleJASA/Biometrika manuscript structure with VanderWeele notation standards
- ▌ Architecture Design · brycewang-stanford bundleUse only when creating new registrable ML components that require Factory or Registry patterns.
- ▌ Obsidian Link Graph · brycewang-stanfordUse this skill when the user wants to repair or strengthen Obsidian wikilinks among existing canonical project notes, especially across papers, knowledge notes, experiments, results, and writing.
- ▌ Planning With Files · brycewang-stanford bundleTransforms workflow to use Manus-style persistent markdown files for planning, progress tracking, and knowledge storage. Use when starting complex tasks, multi-step projects, research tasks, or when the user mentions planning, organizing work, tracking progress, or wants structured output.
- ▌ Web Design Reviewer · brycewang-stanford bundleThis skill enables visual inspection of websites running locally or remotely to identify and fix design issues. Triggers on requests like "review website design", "check the UI", "fix the layout", "find design problems". Detects issues with responsive design, accessibility, visual consistency, and layout breakage, then performs fixes at the source code level.
- ▌ Identify · brycewang-stanfordDesign or review identification strategy for the sewage-house-prices project. Produces strategy memos with estimand, assumptions, pseudo-code, robustness plan, falsification tests, and referee objection anticipation. This skill should be used when asked to "design the strategy", "identify the effect", "write a strategy memo", or "think through identification".
- ▌ Review R · brycewang-stanfordR code review for the sewage project. Checks script structure, reproducibility, function design, figure quality, and professional polish against project conventions (here::here, arrow/parquet, fixest, modelsummary, native pipe). This skill should be used when asked to "review the code", "check my script", or "code review".
- ▌ Conjoint Cleaning · brycewang-stanfordClean and reshape Qualtrics conjoint exports to analysis-ready long format.
- ▌ Methods Reporting · brycewang-stanford bundleCheck methods reporting against CONSORT, JARS, DA-RT standards.
- ▌ Paper Review Lite · brycewang-stanford bundlePre-submission audit: argument, numerics, refs, writing, figures, replication.
- ▌ Scientific Writing · brycewang-stanford bundleCore skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.
- ▌ Scholar Evaluation · brycewang-stanfordApply the ScholarEval framework to systematically evaluate scholarly work across quality dimensions (novelty, rigor, significance, and clarity). Use to critique academic papers, research proposals, literature reviews, or grant applications and produce a structured, criterion-based assessment.
- ▌ Svy · brycewang-stanford bundleComplex survey analysis: strata/PSU/weights, variance estimation (Taylor, BRR, jackknife, bootstrap), survey GLM, domain analysis, calibration. Polars-native. Use for NHANES, CPS, ACS PUMS, BRFSS, DHS. Non-survey regression: statsmodels/pyfixest.
- ▌ Env Snapshot · brycewang-stanfordCaptures tool versions, packages, and kernel info as a reproducibility record in notes/. Use when documenting the environment.
- ▌ Freeze Check · brycewang-stanfordChecks whether registered notebooks have current, stale, or missing outputs. Use before rendering or to verify freshness.
- ▌ New Analysis · brycewang-stanfordScaffolds a method-specific analysis notebook (DiD, IV, RDD, LASSO, Panel FE) with boilerplate. Use when starting a new econometric analysis.
- ▌ New Notebook · brycewang-stanfordCreates a Jupyter notebook with Jupytext pairing and registers it in _quarto.yml. Use when adding a new notebook.
- ▌ Humanizer · brycewang-stanfordStrip AI writing patterns from text. Checks 24 patterns across 4 categories (structural, lexical, rhetorical, formatting) with academic economics adaptation. This skill should be used on any text that reads too "AI-generated", or as a final pass on drafted sections. Triggers on "humanize", "de-AI", "make it sound natural", or "strip AI patterns".
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- ▌ Running Causalpy Experiments · brycewang-stanford bundleFit, summarize, plot, and interpret a chosen CausalPy experiment. Use after the causal method has been selected, including when configuring PyMC/sklearn models and scale-aware custom priors.
- ▌ Figure Table Audit · brycewang-stanfordAudit figures, tables, captions, cross-references, and statistical notes.
- ▌ Narrative Building · brycewang-stanford bundleDraft scientific introductions: argument logic, framing, multi-experiment coherence.