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gabrielmoreira

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• 17 repo stars
• 2 weeks ago last updated

1. ▌
   Foundation Models On Device · gabrielmoreira

   Apple FoundationModels 框架，用于设备端大语言模型（LLM）—— iOS 26+ 中的文本生成、配合 @Generable 的引导式生成、工具调用以及快照流式传输。
   17 repo stars
2. ▌
   Ad Creative Builder · gabrielmoreira

   Use when the user asks to "write ad copy", "generate RSA headlines", or "build ad creative at volume"; produces ad units — RSA headlines/descriptions, hooks, and an angle matrix — message-matched to the destination landing page. Not for scoring an ad account — use ad-account-auditor; not for the post-click page — use landing-optimizer; not for organic articles — use content-writer. 广告创意/广告文案/RSA标题
   17 repo stars
3. ▌
   Product Feed Optimizer · gabrielmoreira

   Use when the user asks to "optimize my Shopping feed", "fix product disapprovals", "improve product titles/attributes", or "build feed-driven PMax asset groups"; audits and rewrites the Shopping/Performance Max product feed — title/description patterns, required and recommended attributes, GTIN/availability/price hygiene, disapproval triage, and feed-driven asset-group / listing-group structure — informing the ROAS O (Offer) dimension. Not for text ad copy — use ad-creative-builder; not for scoring the account or the RQS — use ad-account-auditor. 商品Feed优化/购物广告Feed/商品标题优化/商品禁投修复
   17 repo stars
4. ▌
   Fatigue Frequency Manager · gabrielmoreira

   Use when the user asks to "is my ad fatiguing", "why is CTR dropping at scale", or "should I rotate creative / widen the audience"; reads frequency, CTR and CVR decay against an early-flight baseline and returns Rotate-creative / Widen-audience / Hold triggers with a per-ad-set fatigue read. Not for building the replacement creative — use ad-creative-builder; not for the RQS score or vetoes — use ad-account-auditor. 广告疲劳检测/频次管理/换素材还是扩人群
   17 repo stars
5. ▌
   Report Generator · gabrielmoreira

   Use when the user asks to "create a campaign report", "build an executive summary", or "deliver client results"; produces audience-tailored influencer marketing reports (executive, client, internal team) with data tables, narrative, key learnings, and recommendations. Not for raw metric computation — use performance-analyzer. 达人营销报告/结案汇报
   17 repo stars
6. ▌
   Budget Optimizer · gabrielmoreira

   Use when the user asks to "allocate my influencer budget", "optimize spend across tiers", or "compare budget scenarios"; produces a tier/platform/content allocation table, ROI and CPM/CPE projections, scenario comparisons, and mid-campaign reallocation moves. Not for building the full campaign plan — use campaign-planner. 达人预算分配/投放预算优化
   17 repo stars
7. ▌
   Campaign Planner · gabrielmoreira

   Use when the user asks to "plan an influencer campaign", "build a campaign blueprint", "track or close a creator campaign", or "record a late campaign correction"; produces the plan and, when requested, a non-canonical evidence tracker with scoped identity, publication, reconciliation, close, and reopen receipts. Not for individual creator briefs — use brief-generator; not for overall product launches without creators — use launch-tier-planner; not for sending, publishing, amplifying, or paying — use the owning execution workflow. 达人营销策划/种草方案/活动追踪与关账
   17 repo stars
8. ▌
   Launch Retro Analyzer · gabrielmoreira

   Use when the user asks to "run a launch retro / post-mortem", "compare launch results vs targets by channel", or "decide what to keep or kill for the next launch"; produces a structured D1/W1/M1 retrospective — a per-channel actual-vs-target table (UTM-attributed own analytics as the truth column, platform self-reported numbers as reference, every figure labeled Measured / User-provided / Estimated), a 5-Whys chain on the single largest miss, keep / kill / change decisions per channel, 3-5 actionable learnings for the next launch, and an outcome snapshot submitted to the launch registry. Not for return math (CPA / ROI) — use roi-calculator; not for the stakeholder-facing report writeup — use report-generator; not for a metric deep-dive — use performance-analyzer. 发布复盘/渠道归因/5-Whys/keep-kill
   17 repo stars
9. ▌
   Positioning Mapper · gabrielmoreira

   Use when the user asks to "map our positioning", "name our competitive alternatives", or "pick a beachhead segment for the launch"; produces a Dunford-style positioning canvas — named competitive alternatives (including spreadsheet and status quo), unique attributes (verifiable, or routed to the claims ledger), value themes (attribute→benefit→value chains), a target beachhead segment scored on serviceability / pain intensity / reachability, and a one-sentence onlyness statement — the sole upstream of the message house and the entity-signal source for the canonical entity profile. Not for the message house or per-channel launch copy — use message-house-builder; not for audience/persona profiling itself — use audience-mapper; not for SEO keyword positioning — use keyword-research. 定位画布/竞争替代品/独特价值/滩头细分
   17 repo stars
10. ▌
    Social Quality Auditor · gabrielmoreira

    Use when the user asks to "audit our social presence" or "is this batch safe to publish"; runs either the typed ECHO asset gate or a separate program-maturity profile, with channel-truth, claim, disclosure, manipulation, UGC-rights, and denominator checks. Not for creator deliverables — use creator-content-auditor; not for launch readiness — use launch-readiness-auditor. 社媒资产门/运营成熟度/发布前放行
    17 repo stars
11. ▌
    Social Selling Planner · gabrielmoreira

    Use when the user asks to "set up my founder social-selling routine", "build a daily engagement block for target accounts", or "turn funding / hiring signals into selling plays"; produces the founder/seller daily operating block — a time-boxed engagement-block spec (substantive value-add comments on target-account posts, never a pitch), warm-touch-before-ask cadence rules, trigger-response plays consuming the social-pulse-monitor B2B trigger watchlist (funding / hiring / launch signals), and a quarterly diagnostic that reads LinkedIn SSI as an input diagnostic only (Estimated, vendor-defined — never a target metric). All volume norms are Estimated/community-derived; all execution is human — zero mass-DM, zero connection-request automation, zero engagement automation (LinkedIn UA §8.2 red line); 1:1 pitch and DM mechanics route to outreach-manager. Not for cold email sequences — use cold-outbound-sequencer. 社交销售/创始人日常互动块/热身触达节奏/触发信号剧本
    17 repo stars
12. ▌
    Frontend From Generated Image · gabrielmoreira

    Use for frontend/UI builds, redesigns, polish, or extensions. Before coding, generate a UI reference image, then closely match it instead of inventing a new direction.
    17 repo stars
13. ▌
    Hive Worker Delegation · gabrielmoreira

    Concrete patterns for breaking colony work into parallel worker jobs via run_playbook — when fan-out helps, how to model the goal as a tracker table, write the worker skill, author the playbook, pilot, and let convergence retry/resume the gap.
    17 repo stars
14. ▌
    Sendmux Token Efficient Usage · gabrielmoreira

    Choose low-token Sendmux routes with batching, snippets, sync deltas, pagination, ETags, and idempotency.
    17 repo stars
15. ▌
    Agentlas Core Engine Meta Agent · gabrielmoreira

    Use when creating a single Agentlas agent, creating a multi-agent team, or packaging an existing local/external agent into Agentlas architecture. Make sure to use this for /meta-agent requests.
    17 repo stars
16. ▌
    System Info · gabrielmoreira

    Inspect the host operating system, Python runtime, and local files
    17 repo stars
17. ▌
    Auth And Authorization Patterns · gabrielmoreira

    Use this skill when implementing authentication (login, token issuance) or authorization (access control, permissions). Apply whenever the task involves login flows, JWT, OAuth2, session management, or RBAC.
    17 repo stars
18. ▌
    Date Calculator · gabrielmoreira

    Calculate medical date windows including gestational age, estimated delivery dates, and follow-up visit scheduling. Produces structured JSON output for clinical research and trial coordination workflows.
    17 repo stars
19. ▌
    File Management · gabrielmoreira

    Organize, back up, compress, split, and merge files/folders using rule-driven plans; use when you need safe previews, conflict handling, and verification before executing file operations.
    17 repo stars
20. ▌
    Note Summarizer · gabrielmoreira

    Organize study notes into a structured knowledge-point outline and export to a .docx summary when you need a shareable, hierarchical document from Word/PPT/Text/Markdown inputs.
    17 repo stars
21. ▌
    PDF To Ppt Pack · gabrielmoreira

    Convert research paper PDFs into literature-report PPTX decks using a fully offline workflow (extract text/figures, map captions, summarize findings, and generate slides). Use when you need to turn a PDF into a presentation deck, especially for scientific articles with figures and tables.
    17 repo stars
22. ▌
    Poster Designer · gabrielmoreira

    Generate professional poster design concepts and optimized image-generation prompts, then automatically run a drawing script to produce the final poster image when a user needs a poster.
    17 repo stars
23. ▌
    Spreadsheet Ops · gabrielmoreira

    Spreadsheet processing and analysis for CSV/Excel; trigger when users ask to merge/clean tabular data, run statistics, add/edit Excel formulas, apply formatting, generate charts, or force workbook recalculation.
    17 repo stars
24. ▌
    Word Read Write · gabrielmoreira

    Create and read Microsoft Word (.docx) documents. Use this skill when you need to generate reports/letters/templates as .docx or extract readable text from existing .docx files.
    17 repo stars
25. ▌
    Paper Analysis Assistant · gabrielmoreira bundle

    其他高等院校教师与数据科学家在追踪前沿学术时，当需要深度解析arXiv论文，用此技能可一键下载PDF并自动生成词频分析、双人播客、交互式网页、PPT演示与总结图，将数小时的文献阅读转化为多媒体内容，效率提升十倍！
    17 repo stars
26. ▌
    Pop Up Book Illustration · gabrielmoreira

    平面设计师与内容创作者在制作科技、教育或品牌视觉物料时，一键生成融合纸质手工质感与数字科技光效的3D弹出书风格插画。自动构建多层立体层次与明亮温暖色调，让创意跃然纸上，轻松产出极具视觉冲击力的专业级插画。
    17 repo stars
27. ▌
    Three Body Video Creator · gabrielmoreira bundle

    影片与视频编辑和内容创作者必备！当需要制作《三体》主题视频时，自动化完成选题策划、视觉设计、音频生成到成片合成，多智能体协作流程，3小时搞定72小时工作量。
    17 repo stars
28. ▌
    Wechat Hotspot Publisher · gabrielmoreira bundle

    自媒体创作者和运营专员在需要全网追热点分发时，使用此技能可自动采集热点并10分制筛选优质选题，AI一键生成适配公众号、小红书、B站的爆款图文与HTML排版，直接发布至各平台草稿箱，轻松完成多平台高质量内容分发。
    17 repo stars
29. ▌
    Building MCP Servers · gabrielmoreira

    Authors an MCP server with the official SDK and gates.
    17 repo stars
30. ▌
    Virtual Embryo Atlas Data Knowledge Graph · gabrielmoreira

    Query the Virtual Embryo knowledge graph (mouse/human developmental biology: genes, anatomy, Theiler/Carnegie stages, gene expression, diseases, papers) and its 3D atlas catalog (anatomical OPT/light-sheet volumes + 3D spatial- transcriptomics datasets), and visualise those datasets in 3D with the volume3d / spatial3d live-view viewers. Public read-only HTTP API at https://kg.virtualembryo.ai — no auth, no key needed for reads. Use when the user asks about mouse/human embryo development, where a gene is expressed, an anatomical structure, a developmental stage, or wants to see/visualise the Virtual Embryo atlas or spatial-transcriptomics data.
    17 repo stars
31. ▌
    Design Sync · gabrielmoreira

    Push a React design system to claude.ai/design. This runs a converter that bundles the real component code (from Storybook or a bare package) and uploads it. Use when the user runs /design-sync or says "sync my design system to Claude Design".
    17 repo stars
32. ▌
    3d Object · gabrielmoreira

    three.js model, downloadable as OBJ or GLB
    17 repo stars
33. ▌
    Statistical Ml Review · gabrielmoreira

    Use this when performing statistical analysis, hypothesis testing, A/B testing, model training, model evaluation, feature engineering, or any machine learning task — including documenting assumptions, leakage risks, and validation strategies.
    17 repo stars
34. ▌
    Meraki Security Appliance · gabrielmoreira

    Cisco Meraki MX security appliance (read-only) — L3/L7 firewall rules, content filtering, IDS/IPS and AMP settings, site-to-site VPN, traffic shaping via Cisco's official Meraki MCP. Use when auditing Meraki firewall rules, reviewing content filtering, or inspecting MX VPN configuration
    17 repo stars
35. ▌
    AWS Step Functions · gabrielmoreira

    Build workflows with AWS Step Functions state machines using the JSONata query language. Covers Amazon States Language (ASL) structure, state types, variables, data transformation, error handling, AWS service integration, and migrating from the JSONPath to the JSONata query language.
    17 repo stars
36. ▌
    Directory Management · gabrielmoreira

    Manages project directory setup and artifact organization. Use when starting a new project, resuming an existing one, or when a PLAN.md needs to be associated with a project directory. Creates the project folder structure (specs/, scripts/, notebooks/, manifests/, agent_memory/) and resolves project naming.
    17 repo stars
37. ▌
    Finetuning Technique · gabrielmoreira

    Selects a fine-tuning technique (SFT, DPO, RLVR, or RLAIF) for the user's use case and validates it against the selected model's available recipes. Use when the user has decided to finetune and needs to choose a technique, or when the technique needs to be validated against a model. Requires a base model to already be selected (via model-selection skill).
    17 repo stars
38. ▌
    Plannotator Visual Explainer · gabrielmoreira

    Generate self-contained HTML visualizations with Plannotator theming. Use for implementation plans, PR explainers, architecture diagrams, data tables, slide decks, and any visual explanation of technical concepts. Plans and PR explainers follow Plannotator's prescriptive approach; all other visual content delegates to nicobailon/visual-explainer.
    17 repo stars
39. ▌
    LLM Cost Optimization · gabrielmoreira

    Reduce LLM API and infrastructure costs through model selection, prompt caching, batching, caching, quantization, and self-hosting strategies. Track spend by team and model, set budgets, and implement cost-aware routing.
    17 repo stars
40. ▌
    AWS S3 · gabrielmoreira

    Configure S3 buckets, policies, and lifecycle rules. Implement versioning, replication, and security. Use when managing object storage on AWS.
    17 repo stars
41. ▌
    MCP Server Security · gabrielmoreira

    Secure Model Context Protocol (MCP) servers with transport encryption, tool authorization, input validation, and audit logging for safe AI agent integrations.
    17 repo stars
42. ▌
    Azure Keyvault · gabrielmoreira

    Manage secrets and certificates in Azure Key Vault. Configure access policies, integrate with Azure services, and implement secure secret management. Use when managing secrets in Azure environments.
    17 repo stars
43. ▌
    Unity Pico Design · gabrielmoreira bundle

    Doc-anchored design rules for PICO Unity Integration SDK v3.4.0 — XR/MR/platform services, version diffs 2.x-3.4, hallucination shields
    17 repo stars
44. ▌
    Unity Postprocess · gabrielmoreira

    Configure modern SRP post-processing on URP/HDRP
    17 repo stars
45. ▌
    Octocode Benchmark · gabrielmoreira bundle

    Use when planning, running, grading, or reporting the by-hand Octocode research benchmark — pairwise matchups (Octocode anchor vs one baseline: gh+RTK, gh+Headroom, or plain gh) over markdown questions, with a fresh isolated runner agent per (question, arm, pass), one blind judge per question grading two answers X/Y in randomized order, and an orchestrator that summarizes accuracy/quality/workflow/characters. Results measured in total characters through the model (model-in delivered + model-out commands/args + final answer).
    17 repo stars
46. ▌
    Ehr Analysis · gabrielmoreira bundle

    End-to-end EHR predictive modeling pipeline with PyHealth, covering dataset loading, task definition, model training, evaluation, calibration, and clinical interpretation.
    17 repo stars
47. ▌
    Metabolomics · gabrielmoreira bundle

    Workflow for untargeted or targeted metabolomics including preprocessing, normalization, annotation, statistics, and pathway mapping.
    17 repo stars
48. ▌
    Bio Bam Statistics · gabrielmoreira bundle

    Generate alignment statistics using samtools flagstat, stats, depth, coverage, and mosdepth. Use when assessing alignment quality, calculating coverage, or generating QC reports.
    17 repo stars
49. ▌
    Bio Blast Searches · gabrielmoreira bundle

    Run remote BLAST searches against NCBI servers using Biopython Bio.Blast.NCBIWWW. Use when identifying unknown sequences, finding homologs, picking the correct BLAST program (blastn/blastp/blastx/tblastn/tblastx/psiblast/megablast/dc-megablast), interpreting Karlin-Altschul E-values, avoiding the max_target_seqs trap (Shah 2019), choosing composition-based statistics, or limiting searches by organism. Covers RID lifecycle, database choice (nt/nr/refseq_select/swissprot), word-size and CBS taxonomy.
    17 repo stars
50. ▌
    Bio Clinical Databases Clinvar Lookup · gabrielmoreira bundle

    Queries ClinVar for variant pathogenicity classifications, ClinGen VCEP curations, and somatic-vs-germline interpretations via REST API, weekly VCF, or bulk XML. Use when determining clinical significance, triangulating conflicting interpretations, or aggregating evidence against the ACMG/AMP framework with ClinGen SVI specifications.
    17 repo stars
51. ▌
    Bio Clip Seq Clip Alignment · gabrielmoreira bundle

    Align preprocessed CLIP-seq reads (eCLIP, iCLIP, iCLIP2, PAR-CLIP) to genome with STAR or bowtie2 using crosslink-preserving parameters, choosing between unique-mapper-only and multi-mapper-aware alignment for repeat-binding RBPs, deciding STAR vs HISAT2 memory trade-offs, and applying ENCODE-compatible filters. Use when turning preprocessed CLIP FASTQ into a deduplicated, MAPQ-filtered BAM ready for peak calling or crosslink-site detection.
    17 repo stars
52. ▌
    Bio Copy Number Cnv Annotation · gabrielmoreira bundle

    Annotate copy number variant segments with overlapping genes, dosage-sensitivity scores, cancer driver databases, population frequencies, and clinical-variant content. Covers bedtools/pybedtools interval intersection, AnnotSV comprehensive annotation and ranking, ClinGen haploinsufficiency/triplosensitivity scoring, gnomAD-SV/DGV frequency filtering, COSMIC Cancer Gene Census, and ClinVar overlap. Use when interpreting which genes a CNV affects, distinguishing the driver gene of a focal event from passengers, filtering against population CNVs, separating whole-gene from partial-gene overlap, or preparing CNVs for clinical classification.
    17 repo stars
53. ▌
    Bio Data Visualization Color Palettes · gabrielmoreira bundle

    Select colormaps and qualitative palettes for scientific figures using perceptual-uniformity, color-vision-deficiency safety, and luminance-monotonicity criteria. Covers Crameri scientific colormaps, viridis/cividis/magma, Okabe-Ito categorical, ColorBrewer, and the rainbow/jet critique. Use when choosing palettes for heatmaps, scatter, networks, or any encoding where color carries quantitative or categorical meaning.
    17 repo stars
54. ▌
    Bio Crispr Screens Jacks Analysis · gabrielmoreira bundle

    Runs JACKS (Joint Analysis of CRISPR/Cas9 Knockout Screens; Allen et al 2019 Genome Research) which models per-sgRNA log-fold-change as the product of a treatment-dependent gene-essentiality term and a treatment-independent guide-efficacy term. Covers the Bayesian decomposition math, the hierarchical efficacy prior shared across screens performed with the same library, when JACKS outperforms MAGeCK (multi-screen joint analysis, libraries with broad efficacy variance) and when it does not (single screen, novel libraries with no prior efficacy), library-reuse efficacy transfer, downstream essentiality interpretation, and the 2.5x sample-size reduction enabled by efficacy-aware testing. Use when running multiple screens with the same library, when guide-level noise is suspected to dominate per-gene signal, when reusing published essentiality reference screens for efficacy priors, or when comparing screens performed across cell lines that share library but differ biologically.
    17 repo stars
55. ▌
    Bio Crispr Screens Library Design · gabrielmoreira bundle

    Designs pooled sgRNA libraries for CRISPR knockout, interference (CRISPRi), activation (CRISPRa), Cas12a multiplex, base-editor, and prime-editor screens. Covers on-target scoring (Rule Set 2, Azimuth, DeepSpCas9, CRISPRon), off-target scoring (CFD, MIT), TSS-relative positioning for CRISPRi/a (Horlbeck, Dolcetto, Calabrese), PAM-variant chemistries, control-guide composition, oligo cloning architecture, and library QC. Use when choosing a genome-wide library (GeCKOv2 vs Avana vs Brunello vs TKOv3 vs Inzolia), designing a focused or paralog-focused custom library, picking CRISPRi vs CRISPRa TSS windows, deciding control-guide proportions, or diagnosing library skew and dropout in a freshly cloned pool.
    17 repo stars
56. ▌
    Bio Expression Matrix Metadata Joins · gabrielmoreira bundle

    Merge sample metadata with count matrices and add gene annotations. Use when preparing data for differential expression analysis or visualization.
    17 repo stars
57. ▌
    Bio Systems Biology Model Curation · gabrielmoreira bundle

    Validate, gap-fill, and curate genome-scale metabolic models using memote for quality scores and COBRApy for manual curation. Ensure models meet SBML standards and produce biologically meaningful predictions. Use when improving draft models or preparing models for publication.
    17 repo stars
58. ▌
    Bio Chipseq Motif Analysis · gabrielmoreira bundle

    Discovers de novo motifs and tests known motif enrichment in ChIP-seq, ATAC-seq, or other peak sequences using HOMER, MEME-ChIP (STREME, CentriMo, TOMTOM, FIMO), monaLisa, and AME. Handles background selection (GC-matched, dinucleotide-shuffled, Markov order-2, peak-flanks), motif databases (JASPAR 2024 CORE PWMs, JASPAR 2026 deep-learning collection, HOCOMOCO v12, HOMER built-in), centrally-enriched motif testing, and differential motif analysis. Use when identifying TF binding motifs in peaks, testing for known TF enrichment, scanning for motif instances, comparing motif content between conditions, or interpreting motifs from deep learning models.
    17 repo stars
59. ▌
    Bio Alignment Msa Statistics · gabrielmoreira bundle

    Calculate alignment statistics including sequence identity, conservation scores, substitution matrices, and similarity metrics. Use when comparing alignment quality, measuring sequence divergence, and analyzing evolutionary patterns.
    17 repo stars
60. ▌
    Bio Clinical Databases Polygenic Risk · gabrielmoreira bundle

    Constructs and validates polygenic risk scores using LDpred2-auto, SBayesRC, MegaPRS, PRS-CS, PROSPER, MUSSEL, BridgePRS, JointPRS, PRSmix, or PGS Catalog Calculator with ancestry-aware reference panels (HapMap3, UKB-LD), Pejaver-style calibration, and PRS-RS reporting standards. Use when computing PRS for cohorts, applying Whiffin-style absolute-risk transformation, assessing cross-ancestry portability (Martin 2017 / Ding 2023 continuous ancestry), or auditing PRS manuscripts against the 22-item PRS-RS reviewer checklist.
    17 repo stars
61. ▌
    Bio Experimental Design Power Analysis · gabrielmoreira bundle

    Calculates statistical power and minimum sample sizes for RNA-seq, ATAC-seq, and other sequencing experiments. Use when planning experiments, determining how many replicates are needed, or assessing whether a study is adequately powered to detect expected effect sizes.
    17 repo stars
62. ▌
    Bio Retrosynthesis · gabrielmoreira bundle

    Performs retrosynthetic planning using AiZynthFinder (MCTS, template-based), Chemformer (template-free transformer), ASKCOS, and emerging RetroSynFormer with explicit handling of route scoring, building-block availability (eMolecules, Enamine, Mcule), forward prediction validation (Molecular Transformer), and disconnection-aware multi-objective search (MO-MCTS). Use when assessing synthetic feasibility of generated or selected molecules, planning multi-step syntheses, building synthesis-aware design pipelines, or screening libraries for retro-route feasibility.
    17 repo stars
63. ▌
    Bio Sam Bam Basics · gabrielmoreira bundle

    View, convert, and understand SAM/BAM/CRAM alignment files using samtools and pysam. Use when inspecting alignments, converting between formats, or understanding alignment file structure.
    17 repo stars
64. ▌
    Bio Data Visualization Sequence Logos · gabrielmoreira bundle

    Build sequence logos from aligned DNA, RNA, or protein motifs using ggseqlogo (R), Logomaker (Python), or WebLogo with explicit bits vs probability encoding, background-frequency correction, custom alphabets, and multi-logo stacking. Use when visualizing motif PWMs (TF binding, splice sites, CRISPR spacers), aligned-position composition, or comparing two motif sets.
    17 repo stars
65. ▌
    Bio Uniprot Access · gabrielmoreira bundle

    Query UniProt's REST API (post-2022 endpoint at rest.uniprot.org) for protein sequences, annotations, GO terms, cross-references, ID mappings, and proteomes. Use when fetching UniProtKB entries, navigating the JSON schema, choosing between UniProtKB/UniRef/UniParc/Proteomes resources, deciding stream vs search endpoint for batch retrieval, running ID-mapping jobs with the async pattern, handling isoform suffixes, or filtering reviewed Swiss-Prot vs auto-annotated TrEMBL. Encodes the legacy URL migration (2022), the new JSON schema layout, and bulk-pull patterns.
    17 repo stars
66. ▌
    Bio Vcf Statistics · gabrielmoreira bundle

    Generate variant statistics, sample concordance, and quality metrics using bcftools stats and gtcheck. Use when evaluating variant quality, comparing samples, or summarizing VCF contents.
    17 repo stars
67. ▌
    Fair Esm2 · gabrielmoreira

    Embed proteins with Meta AI's ESM-2 (`fair-esm` package). Use this skill when: (1) Extracting per-residue or per-sequence embeddings for downstream ML, (2) Masked-LM likelihood / mutation effect scoring, (3) Contact prediction from a sequence.
    17 repo stars
68. ▌
    Openfold3 · gabrielmoreira

    Structure prediction using OpenFold3, an open-weights PyTorch reproduction of AlphaFold3 from the AlQuraishi Lab. Use this skill when predicting protein/nucleic-acid/ligand complex structures with an Apache-2.0-licensed AF3 reimplementation.
    17 repo stars
69. ▌
    Fda Orange Book Query · gabrielmoreira bundle

    Query or inspect the FDA Orange Book - FDA-Approved Drug Products Listing resource for drug-centric tasks with emphasis on drug knowledgebase Use whenever Codex needs the calling pattern, downloadable entrypoint, or example query flow from this skill example script.
    17 repo stars
70. ▌
    Drug Repurposing Hub · gabrielmoreira bundle

    Query the Broad Institute Drug Repurposing Hub (~6,800 compounds). Look up drugs by name, gene target, MOA, disease area, Broad ID, or InChIKey. Returns clinical phase, mechanism of action, targets, disease area, indication, and chemical identifiers.
    17 repo stars
71. ▌
    Paper Planning · gabrielmoreira

    Guides pre-writing planning for academic papers with 4 structured steps: story design (task-challenge-insight-contribution-advantage), experiment planning (comparisons + ablations), figure design (pipeline + teaser), and 4-week timeline management. Includes counterintuitive planning tactics (write a mock rejection letter to identify weaknesses before writing, narrow before broad claims, design ablations first). Use when: user wants to plan a paper before writing, design story/contributions, plan experiments, create figure sketches, set a writing timeline, or write a pre-emptive rejection letter for planning purposes. Do NOT use for actual writing (use paper-writing), running experiments (use experiment-pipeline), self-reviewing a finished draft (use paper-review), or finding research problems (use research-ideation).
    17 repo stars
72. ▌
    Paper Rebuttal · gabrielmoreira

    Guides writing effective rebuttals after receiving peer review feedback. Covers review diagnosis (score-driven color-coding), response strategy (champion identification, common-theme consolidation), tactical writing (18 rules), and counterintuitive rebuttal principles. Use when: user received reviewer scores/comments, needs to write a rebuttal or author response, wants to respond to specific criticism (e.g. 'limited novelty', 'missing baselines'), mentions 'rebuttal', 'reviewer comments', 'author response', or 'respond to reviewers'. Do NOT use for pre-submission self-review (use paper-review instead).
    17 repo stars
73. ▌
    Bids Organizer · gabrielmoreira

    Use this skill whenever the user wants to automatically organize raw neuroimaging data (DICOM, NIfTI, EEG, etc.) into a valid BIDS (Brain Imaging Data Structure) dataset. Triggers include: 'organize to BIDS', 'BIDS organizer', 'convert to BIDS', 'BIDS conversion', 'bidsify', 'create BIDS dataset', 'raw data to BIDS', or any request to structure data according to BIDS specification.
    17 repo stars
74. ▌
    Bold5000 Skill · gabrielmoreira

    Use this skill whenever the user wants an end-to-end workflow for the BOLD5000 dataset, including download, BIDS organization, and processing of task-fMRI data with visual image stimuli. Triggers include: 'BOLD5000', 'BOLD 5000', 'process BOLD5000', 'visual fMRI', or any request to run the BOLD5000 pipeline. This is the NeuroClaw dataset-orchestration layer for BOLD5000.
    17 repo stars
75. ▌
    Git Essentials · gabrielmoreira

    Essential Git commands and workflows for version control, branching, and collaboration.
    17 repo stars
76. ▌
    Overleaf Skill · gabrielmoreira

    Use this skill whenever the user wants to synchronize NeuroClaw-generated LaTeX manuscripts with Overleaf, read/write .tex files, download/upload projects, create/rename/archive projects, compare versions, or manage project structure. Triggers include: 'sync to Overleaf', 'upload paper to Overleaf', 'Overleaf project', 'LaTeX sync', 'push draft', 'download Overleaf', 'create Overleaf project', 'tex file to Overleaf', or any request involving paper_draft.tex / collaboration. This skill is the **mandatory interface-layer LaTeX collaborator** in NeuroClaw: it strictly enforces pull-first workflow with diff reporting and per-operation user authorization for any write/create/delete action, uses pyoverleaf (cookie-based), preserves Overleaf version history, integrates directly after paper-writing, and never performs unauthorized modifications.
    17 repo stars
77. ▌
    Seed Vig Skill · gabrielmoreira

    Use this skill whenever the user wants an end-to-end workflow for the SEED-VIG (SJTU Emotion EEG Dataset - Vigilance) dataset, including EEG validation, preprocessing, feature extraction, and vigilance/fatigue detection. Triggers include: 'SEED-VIG', 'SEEDVIG', 'vigilance EEG', 'fatigue detection', 'drowsiness EEG', 'process SEED-VIG', or any request to run the SEED-VIG pipeline.
    17 repo stars
78. ▌
    Ucla Cnp Skill · gabrielmoreira

    Use this skill whenever the user wants an end-to-end workflow for the UCLA CNP (Consortium for Neuropsychiatric Phenomics) dataset, including BIDS validation, multimodal processing of sMRI, task-fMRI, and dMRI, phenotype extraction, and QC integration. Triggers include: 'UCLA CNP', 'Consortium Neuropsychiatric Phenomics', 'process UCLA CNP', or any request to run the UCLA CNP multimodal pipeline.
    17 repo stars
79. ▌
    Beautiful Data Viz · gabrielmoreira bundle

    Create publication-quality matplotlib/seaborn charts with readable axes, tight layout, and curated palettes.
    17 repo stars
80. ▌
    Database Access Skills Index · gabrielmoreira bundle

    Skills for querying and downloading data from genomic, transcriptomic, 3D-genome, and cancer-genomics databases. Covers programmatic access to public repositories, gene annotation, sequence retrieval, processed functional-genomics tracks, Hi-C / Micro-C contact matrices, TCGA-style cohorts, and large-scale single-cell data.
    17 repo stars
81. ▌
    Archs4 Database · gabrielmoreira

    Query ARCHS4 REST API for uniformly processed RNA-seq expression, tissue patterns, co-expression across 1M+ human/mouse samples. Retrieve z-scores, co-expressed genes, samples by metadata, HDF5 matrices. For variant population genetics use gnomad-database; for pathway enrichment use gget-genomic-databases (Enrichr).
    17 repo stars
82. ▌
    Brenda Database · gabrielmoreira

    BRENDA Enzyme DB SOAP/REST queries: kinetic parameters (Km, Vmax, kcat, Ki), EC classes, substrate specificity, inhibitors, cofactors, organism data. 80K+ enzymes, 7M+ values. Free academic registration. For metabolic modeling use cobrapy-metabolic-modeling; metabolites use hmdb-database.
    17 repo stars
83. ▌
    Cosmic Database · gabrielmoreira

    Query COSMIC for cancer somatic mutations, gene census, mutational signatures, drug resistance variants. REST API v3.1 supports gene/sample/variant queries; free registration. For germline use clinvar-database; for drug-target data use opentargets-database or chembl-database-bioactivity.
    17 repo stars
84. ▌
    Encode Database · gabrielmoreira

    ENCODE Portal REST API for regulatory genomics: TF ChIP-seq, ATAC-seq/DNase-seq peaks, histone marks, and RNA-seq across 1000+ cell types. Search experiments by assay/biosample/target; download BED/bigWig; retrieve SCREEN cCREs by region or gene. Use to annotate variants with regulatory tracks, find open chromatin in a cell type, or fetch peak files for ChIP/ATAC analysis. For regulatory variant scoring use regulomedb-database; for GWAS associations use gwas-database.
    17 repo stars
85. ▌
    Gnomad Database · gabrielmoreira

    gnomAD v4 population variant frequencies via GraphQL API. Allele counts and frequencies stratified by ancestry (AFR, AMR, EAS, NFE, SAS, FIN, ASJ, MID), gene-level constraint (pLI, LOEUF, missense z), and coverage. Identify rare or constrained variants. For clinical pathogenicity use clinvar-database; for GWAS use gwas-database.
    17 repo stars
86. ▌
    Gtopdb Database · gabrielmoreira

    Query IUPHAR/BPS Guide to Pharmacology (GtoPdb) for receptor-ligand interactions, target/ligand metadata, families, and approved drugs. Affinities (pKi/pIC50/pKd), action (Agonist/Antagonist/etc.), species, structures (SMILES/InChI). No auth. Always resolve targets via geneSymbol/accession; most metadata lives in sub-resources (/databaseLinks, /structure, /synonyms).
    17 repo stars
87. ▌
    Roary Pangenome · gabrielmoreira

    Compute the bacterial pan-genome from Prokka/Bakta GFF3 annotations with Roary's CD-HIT + BLAST + MCL clustering pipeline. Builds gene presence/absence matrices, core/soft-core/shell/cloud partitions, multi-FASTA core gene alignments (with `-e`), and a pan-genome reference. Use Panaroo for higher-accuracy pan-genomes from highly fragmented assemblies, PIRATE for paralog-aware clustering, or PPanGGOLiN for graph-based partitioning.
    17 repo stars
88. ▌
    Data Integrity Post Moderate · gabrielmoreira

    Check text for profanity, toxicity, sentiment, and language. Returns per-category flags and an is_safe boolean for gating content.
    17 repo stars
89. ▌
    Data Integrity Post Validate · gabrielmoreira

    Validates and scores a single email address, phone number, or text input — or any combination of the three. Returns per-field quality scores, normalized values, risk flags, and an overall quality score for gating or enriching input data.
    17 repo stars
90. ▌
    Disposable Email Get Domains · gabrielmoreira

    Get a paginated list of all disposable domains in the blocklist
    17 repo stars
91. ▌
    Fitness Exercises Get Random · gabrielmoreira

    Returns a single randomly selected exercise. Accepts the same filter parameters as the list endpoint, so you can get a random chest exercise, a random bodyweight exercise, etc.
    17 repo stars
92. ▌
    Fitness Exercises Post Batch · gabrielmoreira

    Fetches up to 50 exercises by their numeric IDs in a single request. IDs that do not exist are silently skipped. Results are returned in the same order as the input array.
    17 repo stars
93. ▌
    Stagehand Facade · gabrielmoreira

    Browse, navigate, inspect, screenshot, and automate websites with the exact fx tools mcp_stagehand_run, mcp_stagehand_snapshot, and mcp_stagehand_screenshot.
    17 repo stars
94. ▌
    Code Mate Antigravity · gabrielmoreira

    Runs Antigravity CLI headlessly for repository analysis and coding tasks. Use when the user asks to delegate work to Antigravity CLI or compare its result with another coding agent.
    17 repo stars
95. ▌
    Code Mate Claude Code · gabrielmoreira

    Runs Claude Code non-interactively for code analysis and implementation tasks. Use when the user asks to delegate repository work to Claude Code or compare its result with another coding agent.
    17 repo stars
96. ▌
    Github Ticket Lifecycle Orchestrator · gabrielmoreira

    Naming conventions and phase protocol for GitHub ticket lifecycle. Baton workflow in manager-ticket-lifecycle.
    17 repo stars
97. ▌
    Enhance Agent Prompts · gabrielmoreira

    Use when improving agent prompts, frontmatter, and tool restrictions.
    17 repo stars
98. ▌
    Enhance Claude Memory · gabrielmoreira

    Use when improving CLAUDE.md or AGENTS.md project memory files.
    17 repo stars
99. ▌
    Sadd Judge With Debate · gabrielmoreira

    Evaluate solutions through multi-round debate between independent judges until consensus
    17 repo stars
100. ▌
     Continuous Discovery · gabrielmoreira bundle

     Build a weekly cadence of customer touchpoints using Opportunity Solution Trees, assumption mapping, and interview snapshots. Use when the user mentions "continuous discovery", "opportunity solution tree", "weekly interviews", "assumption testing", or "discovery habits". Covers experience mapping, co-creation, and prioritizing opportunities. For interview technique, see mom-test. For team structure, see inspired-product.
     17 repo stars