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gabrielmoreira

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• 21k skills
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• 17 repo stars
• 2 weeks ago last updated

1. ▌
   Swarm Orchestration · gabrielmoreira

   Multi-agent swarm coordination for complex tasks. Use when: 3+ files need changes, new features, refactoring. Skip when: single file edits, simple fixes, documentation.
   17 repo stars
2. ▌
   Spring Modulith Verifier · gabrielmoreira

   Verifies whether code follows Spring Modulith code structure or not. Show list of violations along with recommendations on how to fix them. Use this skill: * When reviewing Spring Boot applications which uses Spring Modulith * When verifying whether Spring Boot application code follows Spring Modulith package structure
   17 repo stars
3. ▌
   Offensive Persistence · gabrielmoreira

   Comprehensive persistence tradecraft for authorized red team engagements covering Windows and Linux mechanisms. Windows techniques include registry Run/RunOnce keys, scheduled tasks, WMI event subscriptions, DLL search order hijacking, COM object hijacking, Startup folder drops, service creation, Security Support Provider (SSP) DLL injection, and Active Directory persistence (AdminSDHolder abuse, DCShadow, Golden Ticket, Silver Ticket, Skeleton Key, SID History injection). Linux techniques include cron and at jobs, systemd timers and services, SSH authorized_keys injection, shell profile backdoors (.bashrc/.bash_profile), PAM module backdoors, LD_PRELOAD hijacking, kernel module rootkits, web shells, and Git hook abuse. Provides operator-ready command sequences for SharPersist, Impacket ticketer, schtasks, sc.exe, crontab, and systemctl with OPSEC considerations for each method. Maps to MITRE ATT&CK T1547 (Boot or Logon Autostart), T1053 (Scheduled Task/Job), T1546 (Event Triggered Execution), T1556 (Modify A
   17 repo stars
4. ▌
   Admet Druglikeness Report · gabrielmoreira

   ADMET & Drug-Likeness Report - Generate comprehensive ADMET and drug-likeness report: molecular properties, H-bond analysis, hydrophobicity, topology, and ADMET prediction. Use this skill for medicinal chemistry tasks involving calculate mol basic info calculate mol hbond calculate mol hydrophobicity calculate mol topology pred molecule admet. Combines 5 tools from 2 SCP server(s).
   17 repo stars
5. ▌
   Alanine Scanning Pipeline · gabrielmoreira

   Alanine Scanning Mutagenesis Pipeline - Alanine scanning: design scan, compute properties for each mutant, predict interactions, and compare. Use this skill for protein biochemistry tasks involving AlanineScanningDesigner ComputeProtPara PredictDrugTargetInteraction calculate protein sequence properties. Combines 4 tools from 3 SCP server(s).
   17 repo stars
6. ▌
   Antibody Drug Development · gabrielmoreira

   Antibody Drug Development - Develop antibody drug: target protein analysis, biotherapeutic lookup, protein properties, and interaction prediction. Use this skill for biologics tasks involving get uniprotkb entry by accession get biotherapeutic by name ComputeProtPara ComputeHydrophilicity. Combines 4 tools from 3 SCP server(s).
   17 repo stars
7. ▌
   Comparative Drug Analysis · gabrielmoreira

   Comparative Drug Analysis - Compare drugs: structure analysis, PubChem data, FDA safety, and ChEMBL bioactivity. Use this skill for comparative pharmacology tasks involving ChemicalStructureAnalyzer get compound by name get adverse reactions by drug name search activity. Combines 4 tools from 4 SCP server(s).
   17 repo stars
8. ▌
   Compound To Drug Pipeline · gabrielmoreira

   Compound-to-Drug Analysis Pipeline - Full compound-to-drug pipeline: name-to-SMILES conversion, structure analysis, drug-likeness, and FDA drug lookup. Use this skill for drug development tasks involving NameToSMILES ChemicalStructureAnalyzer calculate mol drug chemistry get drug by name. Combines 4 tools from 4 SCP server(s).
   17 repo stars
9. ▌
   Disease Compound Pipeline · gabrielmoreira

   Disease-Specific Compound Screening - Screen compounds for disease: get DLEPS score for disease relevance, predict ADMET, and check drug-likeness. Use this skill for drug discovery tasks involving calculate dleps score pred molecule admet calculate mol drug chemistry get compound by name. Combines 4 tools from 3 SCP server(s).
   17 repo stars
10. ▌
    Disease Protein Profiling · gabrielmoreira

    Disease Protein Profiling - Profile a disease protein: UniProt data, AlphaFold structure, InterPro domains, phenotype associations from Ensembl. Use this skill for medical proteomics tasks involving query uniprot download alphafold structure query interpro get phenotype gene. Combines 4 tools from 2 SCP server(s).
    17 repo stars
11. ▌
    Dna Rna Sequence Analysis · gabrielmoreira

    Analyze DNA and RNA sequences including molecular weight calculation, reverse complement generation, and oligonucleotide properties.
    17 repo stars
12. ▌
    Drugsda Compound Retrieve · gabrielmoreira

    Retrieve SMILES strings from PubChem using compound names.
    17 repo stars
13. ▌
    Gene Comprehensive Lookup · gabrielmoreira

    Gene Comprehensive Lookup - Comprehensive gene lookup: NCBI gene data, Ensembl gene info, UniProt protein data, and KEGG pathway links. Use this skill for bioinformatics tasks involving get gene metadata by gene name get lookup symbol get general info by protein or gene name kegg find. Combines 4 tools from 4 SCP server(s).
    17 repo stars
14. ▌
    Genetic Counseling Report · gabrielmoreira

    Genetic Counseling Variant Report - Generate variant report for genetic counseling: VEP, ClinVar, gene phenotype, and literature evidence. Use this skill for clinical genetics tasks involving get vep hgvs clinvar search get phenotype gene pubmed search. Combines 4 tools from 2 SCP server(s).
    17 repo stars
15. ▌
    Pharmacogenomics Analysis · gabrielmoreira

    Pharmacogenomics Analysis - Pharmacogenomics analysis: FDA pharmacogenomics info, variant effects, ClinVar pathogenicity, and gene expression. Use this skill for pharmacogenomics tasks involving get pharmacogenomics info by drug name get vep hgvs clinvar search get gene expression across cancers. Combines 4 tools from 4 SCP server(s).
    17 repo stars
16. ▌
    Polymer Property Analysis · gabrielmoreira

    Polymer & Material Property Analysis - Analyze polymer properties: composition, symmetry, density, and lattice parameters for material design. Use this skill for polymer science tasks involving MaterialCompositionAnalyzer CalculateSymmetry CalculateDensity MofLattice. Combines 4 tools from 2 SCP server(s).
    17 repo stars
17. ▌
    Polypharmacology Analysis · gabrielmoreira

    Polypharmacology Analysis - Analyze a drug's multi-target pharmacology: get targets from ChEMBL, functional enrichment from STRING, and pathway links from KEGG. Use this skill for pharmacology tasks involving get target by name get functional enrichment kegg link get mechanism by id. Combines 4 tools from 3 SCP server(s).
    17 repo stars
18. ▌
    Protein Database Crossref · gabrielmoreira

    Protein Cross-Database Reference - Cross-reference protein: UniProt entry, NCBI gene, Ensembl xrefs, and PDB structure search. Use this skill for proteomics tasks involving get uniprotkb entry by accession get gene metadata by gene name get xrefs symbol retrieve protein data by pdbcode. Combines 4 tools from 4 SCP server(s).
    17 repo stars
19. ▌
    Protein Similarity Search · gabrielmoreira

    Protein Similarity Search - Search for similar proteins: extract sequence from PDB, search structures with FoldSeek, find homologs with STRING, and check UniProt. Use this skill for bioinformatics tasks involving extract pdb sequence foldseek search get best similarity hits between species search uniprotkb entries. Combines 4 tools from 3 SCP server(s).
    17 repo stars
20. ▌
    Researcher Ambiguity Gate · gabrielmoreira

    Use when the research goal, evaluation target, scope, resources, timeline, or decision criteria are ambiguous, conflicting, or not operationally testable.
    17 repo stars
21. ▌
    Researcher Plan Architect · gabrielmoreira

    Use when the Researcher must convert a confirmed scientific goal into a staged, executable research plan with role assignments, milestones, resources, checkpoints, and risk controls.
    17 repo stars
22. ▌
    Uniprot Protein Retrieval · gabrielmoreira

    Retrieve protein sequences and functional information from UniProt database by protein name, enabling protein analysis and bioinformatics workflows.
    17 repo stars
23. ▌
    Unit Conversion Nanoscale · gabrielmoreira

    Convert physical quantities and units at nanoscale for materials science and nanotechnology applications.
    17 repo stars
24. ▌
    Variant Gwas Associations · gabrielmoreira

    Query EBI GWAS Catalog for GWAS statistical associations (p-value, effect size, risk allele) between a variant and traits/diseases.
    17 repo stars
25. ▌
    Innoclaw CLI · gabrielmoreira

    Use the local InnoClaw CLI to run app workflows and Deep Research sessions from the terminal. Trigger when the user wants command-line control over this repository instead of only using the web UI.
    17 repo stars
26. ▌
    Gsd Context Fetch · gabrielmoreira

    Search-first skill to reduce unnecessary file reads by searching before loading. Promotes context-efficient exploration through targeted reading and identifier searches.
    17 repo stars
27. ▌
    Syncfusion Maui Accordion · gabrielmoreira bundle

    Implements Syncfusion .NET MAUI Accordion (SfAccordion) - a vertically collapsible panel with stacked headers for expanding/collapsing content. Use when working with accordions, collapsible panels, expandable lists, employee lists with details, or FAQ sections in .NET MAUI applications. Covers AccordionItem configuration, expand modes, and grouped content display.
    17 repo stars
28. ▌
    Syncfusion Maui Licensing · gabrielmoreira bundle

    Sets up and validates Syncfusion .NET MAUI licensing, including license key registration, generation, and error resolution. Use when encountering trial license warnings ("This application was built using a trial version"), licensing errors, license key registration, unlock key vs license key confusion, build server or CI/CD licensing, NuGet package licensing requirements, platform mismatch errors, or version mismatch errors.
    17 repo stars
29. ▌
    Syncfusion Maui Migration · gabrielmoreira bundle

    Migrates Syncfusion components from Xamarin.Forms to .NET MAUI. Use when migrating Xamarin.Forms applications to .NET MAUI, addressing namespace changes, API renames, property migrations, or breaking changes. Covers SfChart to SfCartesianChart migration, handler registration, NuGet package updates, and enum updates.
    17 repo stars
30. ▌
    Syncfusion Maui Scheduler · gabrielmoreira bundle

    Implements Syncfusion .NET MAUI Scheduler (SfScheduler). Use when creating scheduling applications, calendar views, appointment management, event planning, or resource scheduling in .NET MAUI. Covers scheduler views, appointment management, recurring events, and timeline views.
    17 repo stars
31. ▌
    Direct Seedance 3d Animation · gabrielmoreira bundle

    Plan and prompt a stylized 3D animated short for Seedance 2.0 with stable character identities, environment continuity, causal story beats, shot-specific performance, camera, sound, and clip handoffs. Use when a story needs one 4–15 second generation or a longer multi-clip plan; not for photoreal live action, a single still, or generic prompt polishing.
    17 repo stars
32. ▌
    Write Seedance Video Prompts · gabrielmoreira bundle

    Write model-native Seedance 2.0 video prompts from text, images, video, or audio references. Use for text/image generation, multimodal reference, video editing, extension, track fill, or combined tasks that need stable subjects, explicit asset roles, coherent event order, camera, sound, visible text, and a 4–15 second feasibility check.
    17 repo stars
33. ▌
    Unity Perception · gabrielmoreira

    Read-only scene, project and script analysis for AI context
    17 repo stars
34. ▌
    Unity Primetween · gabrielmoreira

    Inspect PrimeTween Free and generate runtime tween scripts
    17 repo stars
35. ▌
    Unity Probuilder · gabrielmoreira

    Model editable meshes with ProBuilder for blockout
    17 repo stars
36. ▌
    Unity Qframework · gabrielmoreira

    Editor automation for QFramework (github.com/liangxiegame/QFramework) — architecture-layer code generation (Architecture/System/Model/Command/Utility/Query via ArchitectureCodeGenerator), ViewController and UIKit panel code generation bound to a GameObject/prefab, UIKit project settings, ResKit AssetBundle marking/build/clear, ResKit SimulationMode and build options, runtime architecture scanning (IArchitecture/ISystem/IModel/ICommand/IQuery/IController), QFramework's built-in API-documentation-attribute query, and LocaleKit editor-locale / language-define configuration. QFramework has no UPM package — detection is reflection-only against whichever install form is present (Toolkits unitypackage or single-file QFramework.cs) — so every skill except qframework_get_status returns MISSING_PACKAGE when the required anchor type cannot be resolved.
    17 repo stars
37. ▌
    Unity Validation · gabrielmoreira

    Validate project and scene health plus cleanup
    17 repo stars
38. ▌
    Copy Number · gabrielmoreira bundle

    Workflow for copy-number estimation, segmentation, annotation, and visualization in sequencing-based assays.
    17 repo stars
39. ▌
    Bio Read Alignment Bwa Alignment · gabrielmoreira bundle

    Align DNA short reads to reference genomes using bwa-mem2, the faster successor to BWA-MEM. Use when aligning DNA short reads to a reference genome.
    17 repo stars
40. ▌
    Bio Workflows Clip Pipeline · gabrielmoreira bundle

    End-to-end CLIP-seq pipeline from FASTQ to ENCODE-compliant binding sites, single-nucleotide crosslink maps, annotation, motifs, and (optionally) differential binding. Use when running the full Yeo lab eCLIP / iCLIP / iCLIP2 / iCLIP3 / irCLIP / PAR-CLIP analysis with SMInput control, protocol-specific UMI extraction, ENCODE STAR parameters, CLIPper or Skipper peak calling with stringent log2 FC and -log10 p thresholds, IDR rescue and self-consistency QC, and downstream motif registration with mCross or PEKA.
    17 repo stars
41. ▌
    Bio Expression Matrix Counts Ingest · gabrielmoreira bundle

    Load gene expression count matrices from various formats including CSV, TSV, featureCounts, Salmon, kallisto, and 10X. Use when importing quantification results for downstream analysis.
    17 repo stars
42. ▌
    Bio Clinical Databases Dbsnp Queries · gabrielmoreira bundle

    Resolves rsIDs, navigates RsMergeArch/SNPHistory merge chains, and converts between rsID, SPDI, HGVS, and VCF representations using the dbSNP Build 156 JSON architecture. Use when normalizing variant identifiers, joining variant databases by cluster ID, or tracking deprecated rsIDs through historical merges.
    17 repo stars
43. ▌
    Bio De Deseq2 Basics · gabrielmoreira bundle

    Perform differential expression analysis using DESeq2 in R/Bioconductor. Use for analyzing RNA-seq count data, creating DESeqDataSet objects, running the DESeq workflow, and extracting results with log fold change shrinkage. Use when performing DE analysis with DESeq2.
    17 repo stars
44. ▌
    Bio Methylation Dmr Detection · gabrielmoreira bundle

    Differentially methylated region (DMR) detection using methylKit tiles, bsseq BSmooth, and DMRcate. Use when identifying contiguous genomic regions with methylation differences between experimental conditions or cell types.
    17 repo stars
45. ▌
    Bio Entrez Search · gabrielmoreira bundle

    Search NCBI databases using Biopython Bio.Entrez (ESearch, EInfo, EGQuery, ESpell). Use when finding records by keyword, building reproducible field-qualified queries, navigating the Entrez Query Translator, exploiting the history server for large result sets, handling retmax caps, or interpreting weekly index lag. Covers PubMed, Nucleotide, Protein, Gene, SRA, GEO, Assembly, Taxonomy, ClinVar, dbSNP.
    17 repo stars
46. ▌
    Bio Fastq Quality · gabrielmoreira bundle

    Work with FASTQ quality scores using Biopython. Use when analyzing read quality, filtering by quality, trimming low-quality bases, or generating quality reports.
    17 repo stars
47. ▌
    Bio Data Visualization Genome Tracks · gabrielmoreira bundle

    Build genome-browser-style multi-track figures with pyGenomeTracks (config-driven), Gviz (R), and IGV batch screenshotting. Covers BigWig coverage tracks, BED/peak overlays, gene-model rendering, Hi-C matrix tracks, BedPE link arcs, spike-in-aware normalization, and the bamCoverage --normalizeUsing trap. Use when producing publication figures of genomic loci with stacked aligned tracks (coverage, peaks, genes, interactions) for ChIP-seq, ATAC-seq, RNA-seq, Hi-C, or generic locus visualization.
    17 repo stars
48. ▌
    Bio Pathway Go Enrichment · gabrielmoreira bundle

    Gene Ontology over-representation analysis using clusterProfiler enrichGO. Use when identifying biological functions enriched in a gene list from differential expression or other analyses. Supports all three ontologies (BP, MF, CC), multiple ID types, and customizable statistical thresholds.
    17 repo stars
49. ▌
    Bio Workflows Gwas Pipeline · gabrielmoreira bundle

    End-to-end GWAS workflow from VCF to association results. Covers PLINK QC, population structure correction, and association testing for case-control or quantitative traits. Use when running genome-wide association studies.
    17 repo stars
50. ▌
    Bio Comparative Genomics Hgt Detection · gabrielmoreira bundle

    Detect horizontal gene transfer (HGT / LGT) using compositional methods (GC%, codon usage, tetranucleotide z-scores via SIGI-HMM, AlienHunter, IslandViewer 4, IslandPath-DIMOB), phylogenetic-incongruence methods (AvP, HGTphyloDetect, ALE / GeneRax / AleRax reconciliation, RANGER-DTL), and BLAST-distribution methods (HGTector v2, DarkHorse, Alien Index). Use when screening prokaryote genomes for genomic islands and HGT events, distinguishing HGT from incomplete lineage sorting / differential gene loss / hybridization, mapping donor lineages via phylogenetic placement, separating eukaryotic HGT from contamination, ruling out gBGC as a false signal, or quantifying DTL rates with ALE/GeneRax on bacterial trees.
    17 repo stars
51. ▌
    Bio Variant Calling Joint Calling · gabrielmoreira bundle

    Joint genotype calling across multiple samples using GATK CombineGVCFs and GenotypeGVCFs. Essential for cohort studies, population genetics, and leveraging VQSR. Use when performing joint genotyping across multiple samples.
    17 repo stars
52. ▌
    Bio Pathway Kegg Pathways · gabrielmoreira bundle

    KEGG pathway and module enrichment analysis using clusterProfiler enrichKEGG and enrichMKEGG. Use when identifying metabolic and signaling pathways over-represented in a gene list. Supports 4000+ organisms via KEGG online database.
    17 repo stars
53. ▌
    Bio Clinical Databases Msi Detection · gabrielmoreira bundle

    Calls microsatellite instability from WES/WGS/targeted-panel with MSIsensor, MSIsensor-pro, MSIsensor-ct (panel-aware), MSIngs, MANTIS, MSIPanel, MSIDetect, and ngsMSI for FDA pembrolizumab MSI-H pan-tumor / Lynch syndrome / dMMR ICI biomarker. Use when stratifying ICI eligibility (Le 2015), pairing MSI with TMB-H (Sha 2020 / Salem 2018), screening Lynch syndrome (universal IHC + MSI), or distinguishing MSI-H tumors from POLE-exo hypermutator with overlapping signatures.
    17 repo stars
54. ▌
    Bio Expression Matrix Normalization · gabrielmoreira bundle

    Normalize and transform RNA-seq count matrices for differential expression, visualization, and clustering. Covers between-sample (TMM, RLE, upper quartile), within-sample (TPM, FPKM), variance-stabilizing (VST, rlog), and single-cell (scran) methods. Use when choosing or applying normalization to expression data.
    17 repo stars
55. ▌
    Bio Qsar Modeling · gabrielmoreira bundle

    Builds QSAR / QSPR models using chemprop D-MPNN, MolFormer, Uni-Mol, ChemBERTa, random forest baselines, and Gaussian processes with explicit handling of OECD 5 principles, applicability domain (kNN, leverage, conformal prediction, Mahalanobis), scaffold-balanced splits, ensemble uncertainty, calibration (Platt, isotonic), feature importance (SHAP, atomic attribution), and prospective validation. Use when building target-specific predictive models from in-house bioassay data, ADMET endpoints, or selectivity profiles.
    17 repo stars
56. ▌
    Bio Copy Number Recurrent Cnv · gabrielmoreira bundle

    Identify recurrent and driver copy number alterations across a tumor cohort with GISTIC2 (G-score, Ziggurat deconstruction, focal vs broad/arm-level analysis, q-values from permutation) and quantify copy-number signatures with the Steele 2022 COSMIC framework and the Drews 2022 CINSignatures framework. Covers driver-gene localization from recurrence peaks, distinguishing focal drivers from arm-level passengers, and the caller-sensitivity caveats of copy-number signatures. Use when finding recurrently amplified or deleted regions in a cohort, localizing driver genes, separating focal from broad events, running GISTIC2, or extracting copy-number mutational signatures.
    17 repo stars
57. ▌
    Bio Sashimi Plots · gabrielmoreira bundle

    Creates sashimi-style plots showing RNA-seq read coverage and splice junction counts using ggsashimi (general-purpose, condition-grouped overlays), rmats2sashimiplot (rMATS-output-aware), MAJIQ-VOILA (LSV posteriors interactive HTML), leafviz (leafcutter clusters Shiny), Jutils (tool-agnostic heatmaps and sashimi for rMATS/leafcutter/SUPPA2/MAJIQ output), or pyGenomeTracks (multi-track publication figures). Tool choice depends on the upstream differential-splicing tool's output format and the publication vs interactive use case. Use when visualizing specific splicing events, validating differential splicing calls, or producing publication-quality figures.
    17 repo stars
58. ▌
    Bio Phylo Species Trees · gabrielmoreira bundle

    Estimate species trees using coalescent methods including ASTRAL-III, wASTRAL, ASTRAL-Pro, SVDQuartets, and BPP. Use when multi-locus data shows gene tree discordance from incomplete lineage sorting, when in the anomaly zone where concatenation is misleading, or when computing concordance factors to assess topological support.
    17 repo stars
59. ▌
    Bio Differential Expression Timeseries De · gabrielmoreira bundle

    Analyze time-series RNA-seq data using limma voom with splines, maSigPro, and ImpulseDE2. Identify genes with dynamic expression patterns. Use when analyzing time-series or longitudinal expression data.
    17 repo stars
60. ▌
    Bio Workflow Management Wdl Workflows · gabrielmoreira bundle

    Create portable bioinformatics pipelines with Workflow Description Language (WDL) using Cromwell or miniwdl execution engines. Use when running GATK best practices pipelines, working with Terra/AnVIL platforms, or building workflows for cloud execution on Google Cloud or AWS.
    17 repo stars
61. ▌
    Esmfold2 · gabrielmoreira bundle

    Biohub ESMFold2 / ESMFold2-Fast all-atom co-folding (Candido et al. 2026, github.com/Biohub/esm). Single-sequence and MSA modes; protein, DNA, RNA, ligand (CCD/SMILES), modified residues. FoldBench Ab-Ag 50-55%, PPI 70-77% DockQ-pass. Also covers the ESMC-{300M,600M,6B} protein language models from the same release: masked-LM logits, hidden states, mutation scoring, contact prediction, and the SAE interpretability head. MIT-licensed weights on HuggingFace org `biohub`. Use this skill when: (1) Predicting complex structures with single-sequence input, (2) Validating designed binders with ESMFold2-Fast, (3) Running ESMFold2 with MSA input, (4) Getting ESMC embeddings or per-residue mutation scores, (5) Choosing kernel backend and sampling-step settings for paper-faithful throughput.
    17 repo stars
62. ▌
    Nutrigx Advisor · gabrielmoreira bundle

    Personalised nutrition report from consumer genetic data (23andMe, AncestryDNA, VCF) — interrogates nutritionally-relevant SNPs and generates actionable dietary guidance, all computed locally.
    17 repo stars
63. ▌
    Repurposedrugs Query · gabrielmoreira bundle

    Query the RepurposeDrugs single-agent drug repurposing database. Use whenever the user asks about drug-disease repurposing associations, clinical trial phases for repurposed drugs, or wants to look up any entity (drug name, disease name, NCT ID) in RepurposeDrugs.
    17 repo stars
64. ▌
    Adhd200 Skill · gabrielmoreira

    Use this skill whenever the user wants an end-to-end workflow for the ADHD-200 dataset, including download, BIDS organization, and processing of sMRI and rs-fMRI data. Triggers include: 'ADHD-200', 'ADHD200', 'process ADHD data', 'ADHD fMRI', or any request to run the ADHD-200 pipeline. This is the NeuroClaw dataset-orchestration layer for ADHD-200.
    17 repo stars
65. ▌
    Beautiful Log · gabrielmoreira

    Use this skill after a conversation or task is completed when the user wants a clean, beautiful HTML chat log. It keeps only direct NeuroClaw <-> User dialogue, filters out tool calls / internal traces / SKILL.md reading notes, and renders distinct colored message cards for each side.
    17 repo stars
66. ▌
    Fmriprep Tool · gabrielmoreira

    Use this skill whenever the user wants to perform standardized preprocessing of functional MRI (fMRI) and anatomical MRI data using fMRIPrep. Triggers include: 'fmriprep', 'fMRIPrep', 'fMRI preprocessing', 'BIDS fMRI', 'run fmriprep', 'preprocess bold', 'BOLD preprocessing', 'anatomical preprocessing', or any request involving BIDS-organized fMRI datasets.
    17 repo stars
67. ▌
    Method Design · gabrielmoreira

    Use this skill whenever the user wants to formalize a network architecture and derive theoretical components from a research idea. Triggers include: 'method design', 'design method', 'network architecture', 'formula derivation', 'method-design', 'theoretical framework', 'derive equations', or any request to transform IDEA.md into a detailed METHOD.md. This skill is the **mandatory interface-layer method formalizer** in NeuroClaw: it reads IDEA.md, designs concrete network structures (layers, modules, connections), performs mathematical derivations (equations, loss functions, proofs), and always outputs a structured METHOD.md.
    17 repo stars
68. ▌
    Nibabel Skill · gabrielmoreira

    Use this skill whenever NeuroClaw needs concrete nibabel operations for neuroimaging files: loading and validating NIfTI images, inspecting shapes and affine matrices, saving derived images, converting voxel coordinates to MNI/world coordinates, or reading FreeSurfer geometry and annotation files. Triggers include: 'nibabel', 'inspect NIfTI', 'read affine', 'save nifti', 'voxel to MNI', 'atlas coordinates', 'read FreeSurfer surface', 'read annot', or any request focused on low-level neuroimaging I/O rather than full preprocessing.
    17 repo stars
69. ▌
    Research Idea · gabrielmoreira

    Use this skill whenever the user wants to generate or refine a research idea through literature search and discussion. Triggers include: 'research idea', 'brainstorm idea', 'generate idea', 'research-idea', 'idea generation', 'discuss new direction', or any request to explore literature and output to IDEA.md. This skill is the **mandatory interface-layer idea generator** in NeuroClaw: it calls networking search skills to retrieve recent papers, identifies gaps/trends, then iteratively discusses with the user to finalize a structured idea, always saving the result as IDEA.md.
    17 repo stars
70. ▌
    Seed Iv Skill · gabrielmoreira

    Use this skill whenever the user wants an end-to-end workflow for the SEED-IV (SJTU Emotion EEG Dataset - 4 emotions) dataset, including EEG validation, preprocessing, feature extraction, and emotion classification. Triggers include: 'SEED-IV', 'SEED4', 'emotion EEG', 'EEG emotion recognition', 'process SEED-IV', or any request to run the SEED-IV pipeline.
    17 repo stars
71. ▌
    Skill Updater · gabrielmoreira

    Use this skill after a task succeeds (user confirms 'success' or tools report success). It extracts new experience from the session log + daily memory, locates relevant skills, and proposes diff-formatted updates to SKILL.md files with a clear summary for the user.
    17 repo stars
72. ▌
    Ardem Patapoutian · gabrielmoreira

    2021年诺贝尔生理学或医学奖得主，PIEZO1/PIEZO2机械力感受器发现者。 以功能性筛选策略鉴定全新的离子通道家族，揭示了触觉、本体感觉等机械力转导的分子基础。 触发词：「Patapoutian」「PIEZO」「mechanosensation」「mechanotransduction」「压力感受器」「触觉分子机制」。 信息源：诺奖官网、Nature/Science/Cell论文、PNAS/Quanta Magazine/Kavli Prize、Scripps/HHMI官方资料。 调研时间：2026-04-06。
    17 repo stars
73. ▌
    Bio Phylogenomics · gabrielmoreira bundle

    Build marker gene alignments and phylogenetic trees.
    17 repo stars
74. ▌
    Figure Styling Skills Index · gabrielmoreira

    Aesthetic guidelines for scientific figure production. Each style file specifies palettes, typography, layout, and domain-specific sub-styles for a given target venue (NeurIPS, Nature, IEEE, etc.) and figure class (methodology diagram vs. statistical plot). Used by the Graph Maker Team's `illustrator` and `data_plotter` agents.
    17 repo stars
75. ▌
    Dbsnp Database · gabrielmoreira

    Query NCBI dbSNP for SNP records by rsID, gene, or region via E-utilities and Variation Services REST API. Retrieve alleles, MAF, variant class (SNV/indel/MNV), clinical links, cross-DB IDs (ClinVar, dbVar, 1000G). Free; 3 req/sec (10 with key). For clinical pathogenicity use clinvar-database; for population frequencies use gnomad-database.
    17 repo stars
76. ▌
    Pride Database · gabrielmoreira

    Search the PRIDE Archive v3 REST API for proteomics datasets: discover projects by keyword + faceted filters (organism, instrument, disease, software), fetch project metadata, list and download RAW/PEAK/RESULT/FASTA files (with FTP/Aspera URLs), look up which projects mention a UniProt accession, and find similar projects. PRIDE v3 no longer exposes peptide/PSM-level identification endpoints — for spectrum-level data download the project's RESULT files. Use uniprot-protein-database for protein sequences; interpro-database for domain architecture.
    17 repo stars
77. ▌
    Commodities Get Commodity · gabrielmoreira

    Returns the latest annual average price and up to 10 years of historical data for the requested commodity slug.
    17 repo stars
78. ▌
    Data Integrity Get Domain · gabrielmoreira

    Evaluate the trustworthiness of a domain by analyzing DNS records, WHOIS registration data, and MX configuration — in a single call.
    17 repo stars
79. ▌
    Disposable Email Post Batch · gabrielmoreira

    Validate multiple email addresses in a single request (max 100 emails)
    17 repo stars
80. ▌
    Disposable Email Post Check · gabrielmoreira

    Validate whether an email address uses a disposable domain
    17 repo stars
81. ▌
    Geocode Get Reverse Geocode · gabrielmoreira

    Converts geographic coordinates into a human-readable address.
    17 repo stars
82. ▌
    Phone Validation Post Batch · gabrielmoreira

    Validates up to 50 phone numbers in a single request. Results are returned in the same order as the input.
    17 repo stars
83. ▌
    Random User Get Random User · gabrielmoreira

    Returns a randomly generated fake user profile.
    17 repo stars
84. ▌
    Spell Check Post Spellcheck · gabrielmoreira

    Checks the input text for spelling mistakes and returns a corrected version along with per-word corrections.
    17 repo stars
85. ▌
    Unit Conversion Get Convert · gabrielmoreira

    Convert a value from one unit to another
    17 repo stars
86. ▌
    Subject Learning Assistant · gabrielmoreira

    基于 memocli (memories-off) 的结构化、三层分级的学习助手。支持内容摄取、自动大纲规划（主题 -> 任务 -> 概念）、引导式教学以及实时的地铁图可视化
    17 repo stars
87. ▌
    React Native Tv Best Practices · gabrielmoreira bundle

    Reviews React Native TV apps for focus/D-pad navigation, 10-foot UI layout, TV playback/DRM integration, low-memory TV performance, and TV accessibility. Use when building, debugging, or reviewing react-native-tvos, Expo TV, Amazon Vega/Kepler, or React Native web TV targets where the issue depends on remote input, TV focus, TV packaging, TV hardware, or TV playback constraints.
    17 repo stars
88. ▌
    Ian Xiaohei Illustrations · gabrielmoreira

    生成 Ian 风格的中文正文配图。用于用户要求为中文文章、帖子、博客、Notion 文档、工作流文档、方法论、流程、结构、状态、隐喻或观点生成“怪诞”“小黑”“手绘”“正文配图”“文章插图”“配图建议”“shot list”“去标题/改图”等任务；默认使用小黑 IP、纯白手绘、少量红橙蓝批注、简洁清爽但天马行空的视觉风格。
    17 repo stars
89. ▌
    Sadd Multi Agent Patterns · gabrielmoreira

    Design multi-agent architectures for complex tasks. Use when single-agent context limits are exceeded, when tasks decompose naturally into subtasks, or when specializing agents improves quality.
    17 repo stars
90. ▌
    Pragmatic Programmer · gabrielmoreira bundle

    Apply meta-principles of software craftsmanship: DRY, orthogonality, tracer bullets, and design by contract. Use when the user mentions "best practices", "pragmatic approach", "broken windows", "tracer bullet", or "software craftsmanship". Covers estimation, domain languages, and reversibility. For code-level quality, see clean-code. For refactoring techniques, see refactoring-patterns.
    17 repo stars
91. ▌
    Predictable Revenue · gabrielmoreira bundle

    Build a scalable outbound B2B sales process with specialized roles (SDR, AE, CSM). Use when the user mentions "outbound sales", "Cold Calling 2.0", "prospecting emails", "sales pipeline", "SDR process", or "B2B SaaS sales". Covers lead generation, qualification frameworks, and separating prospecting from closing. For offer design, see hundred-million-offers. For persuasion science, see influence-psychology.
    17 repo stars
92. ▌
    Onboard Developer · gabrielmoreira

    Generates an onboarding guide for new team members. Covers development setup, workflow conventions, key modules, common tasks, and troubleshooting. Different from generate-docs (which documents what exists) — this documents how to work here.
    17 repo stars
93. ▌
    Open Source Maintainer · gabrielmoreira bundle

    End-to-end GitHub repository maintenance for open-source projects. Use when asked to triage issues, review PRs, analyze contributor activity, generate maintenance reports, or maintain a repository. Triggers include "triage", "maintain", "review PRs", "analyze issues", "repo maintenance", "what needs attention", "open source maintenance", or any request to understand and act on GitHub issues/PRs. Supports human-in-the-loop workflows with persistent memory across sessions.
    17 repo stars
94. ▌
    Threat Modeling · gabrielmoreira

    Threat modeling skill for identifying security threats, attack surfaces, and designing mitigations. This skill should be used when performing threat assessments using STRIDE, PASTA, or Attack Trees, creating data flow diagrams, identifying trust boundaries, analyzing attack surfaces, or designing security controls for applications and systems. Triggers on requests to threat model, analyze attack surface, create DFD, apply STRIDE methodology, or assess security architecture.
    17 repo stars
95. ▌
    Frontend Blueprint · gabrielmoreira bundle

    AI frontend specialist and design consultant that guides users through a structured discovery process before generating any code. Collects visual references, design tokens, typography, icons, layout preferences, and brand guidelines to ensure the final output matches the user's vision with high fidelity. Use when the user asks to build, design, create, or improve any frontend interface — websites, landing pages, dashboards, components, apps, emails, forms, modals, or any UI element. Also triggers on "build me a UI", "design a page", "create a component", "improve this layout", "make this look better", "frontend", "interface", "redesign", or when the user provides mockups, screenshots, or design references. Do NOT use for backend logic, API design, database schemas, or non-visual code tasks.
    17 repo stars
96. ▌
    Xhs Longform Private Publisher · gabrielmoreira bundle

    This skill should be used when the user wants to publish an existing Markdown article to Xiaohongshu as a private longform post, keep the original wording and structure, insert inline images in order, use one-click layout, and verify the result in note manager.
    17 repo stars
97. ▌
    Git Master · gabrielmoreira

    Handles git work: atomic commits, rebase, squash, blame, bisect, reflog, and history questions. Use whenever a task needs a commit or a git-history investigation; skip for ordinary code edits.
    17 repo stars
98. ▌
    Negotiation · gabrielmoreira

    A comprehensive skill for mastering negotiation — from preparation and frameworks to tactics, multi-party dynamics, and closing. Covers salary negotiation, buyer vs seller dynamics, remote negotiation, and more.
    17 repo stars
99. ▌
    Sre Practices · gabrielmoreira

    SLIs/SLOs/SLAs, error budgets, incident response, postmortems, and reliability patterns
    17 repo stars
100. ▌
     Terraform Iac · gabrielmoreira

     State management, modules, workspaces, remote backends, and multi-environment strategies
     17 repo stars