pedrohcgs

@pedrohcgs source repo

45 skills
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16 hours ago last updated

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PDF To Md · pedrohcgs
Convert a PDF (or any document) to clean markdown so Claude can read it efficiently. Tries Microsoft MarkItDown first; falls back to OpenDataLoader-PDF for complex layouts (multi-column papers, dense tables, math). Use when user says "convert this PDF", "make this document readable", "turn paper.pdf into markdown", "preprocess this document", or before reading any PDF for analysis.

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Review Paper · pedrohcgs
Manuscript Review

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Validate Bib · pedrohcgs
Validate bibliography entries against citations in all lecture files. Structural checks (missing/unused entries, malformed fields) by default; `--semantic` adds citation-drift detection, DOI verification, and style-consistency checks.

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Slide Excellence · pedrohcgs
Multi-agent comprehensive slide review (visual + pedagogy + proofreading, plus TikZ / parity / substance conditionally). Use when user says "full review", "excellence pass", "comprehensive check", "review everything", "pre-release review", "slide excellence", or before teaching / shipping a deck. Fanout wrapper — for a single lens, use `/visual-audit`, `/pedagogy-review`, or `/proofread` directly.

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Research Ideation · pedrohcgs
Generate structured research questions, testable hypotheses, and candidate empirical strategies from a topic, phenomenon, or dataset description. Use when user says "give me research ideas on X", "brainstorm questions about Y", "what could I study with this data?", "I'm looking for a paper idea on...", "generate hypotheses for...". One-shot generation, not multi-turn. For idea-refinement use `/interview-me`.

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Seven Pass Review · pedrohcgs
Mechanize Pattern 15 — the seven-pass adversarial review protocol for academic manuscripts. Spawns 7 forked subagents in parallel (abstract, intro, methods, results, robustness, prose, citations), then synthesizes a prioritized revision checklist. Use for submission-ready or R&R-stage papers where single-pass review isn't enough.

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Stata Replication · pedrohcgs
End-to-end Stata replication pipeline — scaffolds numbered `.do` files in `scripts/stata/`, executes them via the `stata-mcp` MCP server, captures logs and outputs to `scripts/stata/_outputs/`, and produces publication-ready tables (esttab) and figures (graph export). Mirrors `/data-analysis` for R-first projects. Use when user says "stata replication", "set up Stata pipeline", "scaffold the .do files", "run Stata analysis", "AEA replication package in Stata", or when a project's analysis language is Stata not R.

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Scaffold Exercises · pedrohcgs
Scaffold a graded problem set with sections, problems, worked solutions, and short "why this matters" explainers across analytical, empirical, and coding types. Use when user says "make a problem set on X", "scaffold exercises for this lecture", "create practice problems", "generate homework with a solution key", "build a graded assignment on topic Y". Emits a clean student set plus a separate solution key — NOT for grading submissions or auto-checking student answers.

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Replication Package · pedrohcgs
Assemble a submission-ready replication package to the AEA Data and Code Availability Standard (DCAS) / openICPSR / Social Science Reproduction Platform expectations — standard replication README, dataset manifest, computational-requirements capture, a Table/Figure → script:line map, and a confidential-data deposit plan. Use when user says "build the replication package", "prepare the openICPSR deposit", "make the AEA data and code package", "DCAS compliance", "assemble the deposit for the journal", or after a paper is accepted and the journal's data editor needs the package. NOT a numeric verifier — it calls /audit-reproducibility to confirm claims reproduce before packaging.

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Respond To Referees · pedrohcgs
Generate a structured response-to-referees document from a referee report and the revised manuscript. Maps each referee comment to the specific revision, classifies coverage (addressed / partially / deferred / disagreement), and drafts polite but firm responses. Use during the R&R (revise-and-resubmit) stage of paper revision.

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Data Management Plan · pedrohcgs
Draft a funder-compliant Data Management Plan (NSF DMP, NIH DMS Policy 2023, ERC, Horizon Europe) by composing the confidential-data and environment-capture primitives. Sections cover data description, formats/metadata, storage/backup, access/sharing, preservation/archiving, and roles. Use when user says "data management plan", "DMP", "DMSP", "NIH data sharing plan", "write the data plan for my grant", or when a grant proposal needs a data-management section. NOT a submission tool — produces a draft the user pastes into the funder portal (DMPTool, NIH ASSIST, Horizon Europe portal).

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Audit Reproducibility · pedrohcgs bundle
Enforce the replication-protocol.md rule by cross-checking numeric claims in a manuscript against the actual R / Stata / Python outputs. Report PASS/FAIL per claim against tolerance thresholds. Use before submission and before releasing a replication package.

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Blast Radius · pedrohcgs
Before and after changing anything shared — a function's return value, a signature, a schema, a label set, a config default, a constant, a file format — find every consumer and actually run them. Catches the change that looks purely additive but silently breaks a contract in a file you never opened. Use when editing shared code, adding a field/column/return element, renaming, changing units or defaults, or touching a pipeline that produces reported numbers.

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Extract Tikz · pedrohcgs
Extract TikZ diagrams from Beamer `.tex` source, compile each to a standalone PDF, and convert to SVG with 0-based indexing. Use when user says "extract the tikz", "regenerate the diagrams", "rebuild the SVGs", "sync tikz to quarto", or after editing TikZ blocks in a Beamer deck that also has a Quarto mirror.

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Interview Me · pedrohcgs
Interactive interview that formalizes a fuzzy research idea into a structured spec (RQ, hypotheses, identification, data needs, empirical strategy). Use when user says "interview me", "help me think through this idea", "I have a half-baked idea", "formalize this into a project", "walk me through framing a study". Multi-turn Q&A; saves spec to disk. NOT for lit review (`/lit-review`) or ideation from scratch (`/research-ideation`).

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Triage Inbox · pedrohcgs
Triage academic email and calendar (Gmail / Google Calendar via the session's MCP) into a prioritized digest plus a referee-obligations tracker — classifying referee requests, R&R and editor correspondence, co-author threads, seminar and conference invites, and grant/admin deadlines, and proposing a human-gated action for each (draft reply, calendar hold, scaffold a project, snooze). Use when user says "triage my inbox", "check my academic email", "what needs my attention this week", "go through my mail", or when run as a scheduled routine. NEVER auto-sends or auto-accepts anything.

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Visual Audit · pedrohcgs
Adversarial visual-layout audit of a Quarto `.qmd` or Beamer `.tex` deck. Flags overflow, font inconsistency, box fatigue, spacing, and alignment issues. Use when user says "visual audit", "check the layout", "does this overflow?", "look for visual issues", "audit the slides", or after reworking a deck's appearance. Does NOT check writing or pedagogy — pair with `/proofread` or `/pedagogy-review`.

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Data Analysis · pedrohcgs
End-to-end R data analysis pipeline — exploration → cleaning → regression → publication-ready tables and figures. Use when user says "analyze this dataset", "run a regression on X", "explore this CSV", "full analysis workflow", "get me summary stats and a regression", or points at a `.csv`/`.rds`/`.dta` and asks for empirical results. Produces numbered R scripts in `scripts/R/` and outputs to `scripts/R/_outputs/`.

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Verify Claims · pedrohcgs bundle
Run Chain-of-Verification (CoVe) on a draft or a block of text with factual claims. Spawns the `claim-verifier` agent in a forked (fresh) context so it never sees the draft — then reports which claims are supported, contradicted, or unverifiable. Use when user says "verify these citations", "check the claims in X", "did I hallucinate anything", "fact-check this draft", "run CoVe on this", or after any text generation that asserts facts about papers, datasets, or numerical results. NOT for style/grammar review (use `/proofread`) or substance review (use `/review-paper`).

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Coauthor Brief · pedrohcgs
Generate a co-author / collaborator handoff brief for a multi-author, multi-machine project — summarizing what changed since the last brief (git delta), the current state of each artifact (manuscript, analysis, slides), open questions, how to reproduce locally, and any restricted-data access steps. Use when user says "coauthor brief", "handoff brief", "bring my coauthor up to speed", "what changed since last week", "onboard a collaborator", "write a handoff for [name]", or before sending a co-author the repo. NOT a commit or a checkpoint — it is the cross-machine, cross-person summary `meta-governance.md` only partially covers.

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Context Status · pedrohcgs
Show current context status and session health. Use to check how much context has been used, whether auto-compact is approaching, and what state will be preserved.

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Create Lecture · pedrohcgs
Create a new Beamer lecture `.tex` from source papers and materials, with notation consistency checks and the project's preamble wired in. Use when user says "create a lecture on X", "new lecture from these papers", "start a deck on topic Y", "scaffold a new Beamer file", "build me a lecture from these PDFs". Scaffolds the full deck — NOT for compiling existing `.tex` (use `/compile-latex`).

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Grant Proposal · pedrohcgs
Scaffold a research grant proposal (NSF, NIH, ERC, or foundation) by composing existing primitives — pulls identification strategy from an `/interview-me` spec, delegates the data-management plan to `/data-management-plan` and the facilities statement to `/capture-environment`, and emits a funder-requirements checklist. Use when user says "draft a grant", "write a proposal", "NSF proposal", "NIH aims", "ERC application", "foundation grant", "specific aims", or "scaffold a grant proposal". NOT a submission tool — produces a draft the user uploads to the sponsor's portal themselves.

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Power Analysis · pedrohcgs
Compute statistical power, required sample size, and minimum detectable effect (MDE) for a study design, then write a registry-ready power section. Handles two-arm RCTs (with clustering / ICC and unequal allocation), multiple-arm corrections, and a simulation-based power option for non-standard designs (DiD/event-study, IV, panel). Use when user says "power analysis", "power calculation", "MDE", "minimum detectable effect", "how big a sample do I need", "is my study powered", "power for an RCT", or when /preregister needs a power section for an experiment. Produces a power/MDE table, power curves, and a methods paragraph to paste into a preregistration.

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Devils Advocate · pedrohcgs
Adversarial 5-7 question challenge to a deck's pedagogical choices — ordering, prerequisites, cognitive load, motivation. Use when user says "devil's advocate", "poke holes in this deck", "push back on my slides", "stress-test the design", "what would a skeptical student ask?". Read-only; surfaces questions to force rethinking. Lighter than `/pedagogy-review`.

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Pedagogy Review · pedrohcgs
Holistic pedagogical review of a lecture deck (`.qmd` or `.tex`). Checks narrative arc, prerequisite assumptions, worked examples, notation clarity, and deck-level pacing. Use when user says "pedagogy review", "does this teach well?", "is the flow right?", "will students follow?", "review the narrative", or before teaching a deck for the first time. Read-only; produces a report.

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R Package Check · pedrohcgs
Run the full R package release gate — regenerate docs, run the test suite, run R CMD check --as-cran, and triage every ERROR / WARNING / NOTE against CRAN policy before a release or submission. Use when the user says "check my R package", "R CMD check", "is this package CRAN-ready", "run devtools::check", "prepare for CRAN submission", or points at a directory containing a DESCRIPTION file. Produces a check report + CRAN-submission checklist in `quality_reports/`.

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Respond To Eval · pedrohcgs
Turn student course evaluations (free-text + numeric) into an actionable teaching-improvement plan — the teaching analogue of /respond-to-referees. Clusters comments into themes, separates signal from noise, classifies each theme Keep / Change / Investigate / Out-of-scope, and drafts concrete changes mapped to the syllabus and slide decks. Use when user says "respond to my evals", "what do these course evaluations tell me", "turn my teaching feedback into a plan", or after a semester's evals arrive.

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Compress Session · pedrohcgs
Distill the current conversation into a structured note (decisions made, open questions, file pointers with line numbers, next 1–3 actions) and save to `quality_reports/session_logs/` before auto-compression. Differs from `/checkpoint` (explicit stop-point snapshot) and from auto-compaction (which truncates rather than distills). Use when context is approaching auto-compact threshold, when a long pipeline has accumulated many decisions, or when the user says "compress", "distil this session", "before we hit auto-compact", "structured handoff before context resets".

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Permission Check · pedrohcgs
Diagnose why Claude Code is (or isn't) prompting for permission. By default reads only repo-local layers (CLI project, CLI project-local, VSCode workspace). Host-global layers (CLI user `~/.claude/`, VSCode user settings) are read ONLY when the user explicitly confirms — those files may contain unrelated paths or secrets. Use when user says "why is it asking me to approve?", "permission check", "why am I getting prompts?", "bypass isn't working", "check my permissions". Read-only diagnostic.

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Simulation Study · pedrohcgs
Scaffold and run a reproducible Monte Carlo simulation study in R — a declared assumption regime, a parameterized DGP, an estimator grid, a seeded replication loop, and a summary of bias, RMSE, empirical SE, coverage, size/power with Monte Carlo standard errors. Use when the user says "run a Monte Carlo simulation", "simulation study", "check the bias/coverage of an estimator", "compare estimators in simulation", "size and power simulation", "Monte Carlo experiment", or wants to demonstrate an estimator's finite-sample properties. Produces a numbered R script in `scripts/R/` and saves per-replication raw results + a summary table to `scripts/R/_outputs/`.

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Learn · pedrohcgs
Extract reusable knowledge from the current session into a persistent skill. Use when you discover something non-obvious, create a workaround, or develop a multi-step workflow that future sessions would benefit from.

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Commit · pedrohcgs
Stage, commit, push, open a PR, and merge to main. Use ONLY on explicit commit intent — user says "commit", "ship it", "push this", "open a PR", "merge to main", "let's commit this", or prefixes with `/commit`. Do NOT auto-invoke on vague end-of-task phrases ("we're done", "wrap up") — those require explicit confirmation first. Runs the standard commit-PR-merge cycle; never force-pushes or skips hooks.

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Deploy · pedrohcgs
Render Quarto `.qmd` slides to HTML and sync to `docs/` for GitHub Pages. Use when user says "deploy", "publish the slides", "ship to pages", "push the lecture live", "render and publish", or after Quarto edits that need to go public. NOT for local Quarto render only — use `quarto render` directly for that.

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Humanize · pedrohcgs
Read-only audit of `.tex`, `.qmd`, or `.md` text for AI-voice tells — boilerplate transitions ("Moreover", "Furthermore", "It is important to note that"), AI-cliché lexicon ("delve", "navigate the complexities", "tapestry", "robust framework"), em-dash overuse, symmetric paragraph shapes, tricolon abuse, hedging stacking, "not only X but also Y" frames, and formulaic openers. Produces a report; does NOT rewrite. Use when user says "humanize", "does this sound like AI?", "check for AI tells", "de-AI this draft", "remove AI voice", "audit my prose for sycophancy", or before journal submission / posting a working paper.

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Review R · pedrohcgs
Read-only R code review protocol for `.R` scripts. Checks code quality, reproducibility, domain correctness, tidyverse idioms, and professional standards; produces a report without editing. Use when user says "review this R script", "check the R code", "audit the analysis code", "code review on the R", or when an R file is touched as part of a paper submission. NOT for running the code — pair with `/audit-reproducibility` for numeric verification.

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Challenge · pedrohcgs bundle
Stress-test a finding against the choices you did not make. Enumerates the discrete forks a competent analyst could have taken (measure definition, sample filter, control set, clustering level, weighting, functional form), runs the specification grid, and reports the distribution rather than a point estimate — then attacks the identifying assumption with named, computable sensitivity statistics. Use when the user says "is this robust", "challenge this result", "specification curve", "multiverse", "how sensitive is this", "what if I'd used a different measure", "stress-test my estimate", or before a result becomes a headline claim. NOT a reviewer of prose or code — it challenges the CLAIM.

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New Skill · pedrohcgs
Scaffold a new skill that follows this repo's conventions — interviews for purpose, trigger phrases, and tool needs, then writes `.claude/skills/<name>/SKILL.md` from the skill template with frontmatter and body that pass the integrity gates on first try. Use when user says "write a skill", "scaffold a skill", "create a new skill", "I keep doing X, make it a skill", "new slash command", or "turn this workflow into a skill". NOT for capturing a one-off session discovery — that is `/learn`.

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Proofread · pedrohcgs
Read-only proofreading pass over lecture `.tex` or `.qmd` files. Checks grammar, typos, overflow, terminology consistency, and academic writing quality; produces a report without editing. Use when user says "proofread", "check for typos", "look for grammar issues", "copy-edit this", "any writing errors?", or before a lecture release.

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QA Quarto · pedrohcgs
Adversarial Quarto-vs-Beamer parity QA. A critic agent compares the Quarto HTML render to the Beamer PDF benchmark for content/visual parity; a fixer agent applies fixes; loops until APPROVED (max 5 rounds). Use when user says "qa the quarto", "check parity", "does the html match the pdf?", "quarto matches beamer?", or after a translate-to-quarto run. Requires both the `.qmd` rendered and a `.pdf` benchmark.

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Checkpoint · pedrohcgs
Save a structured state snapshot before stopping or handing off. Captures the active plan, recent decisions, file pointers (with line numbers), open questions, and the next 1–3 actions into a checkpoint file under `quality_reports/checkpoints/`. Optionally proposes `[LEARN]` entries to add to MEMORY.md. Use when user says "checkpoint", "save state", "snapshot before I stop", "where am I", "wrap up the session for handoff", or before a long break / model switch / collaborator handoff. Companion to (NOT replacement for) the narrative session-log workflow.

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Deep Audit · pedrohcgs bundle
Comprehensive adversarial audit of a theory, proof, math/econ paper, codebase, or set of claims — decompose into components, fan out independent skeptics that must return CONCRETE defects, adjudicate every finding with a separate judge, fix all confirmed defects, then re-verify. Use when correctness must be bulletproof and single-pass or round-by-round review is too slow and too shallow. Invoke for "audit this rigorously", "find ALL the bugs/gaps", "make this rock solid", "converge faster on correctness".

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Lit Review · pedrohcgs
Structured literature search + synthesis with citation extraction, thematic clustering, and gap identification. Use when user says "find papers on X", "do a lit review", "what's the literature on...", "summarize what we know about...", "where's the gap in this field", "review recent work on Y". Produces a written review with BibTeX-ready citations. Uses WebSearch/WebFetch for recent work.

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New Diagram · pedrohcgs
Scaffold a new TikZ diagram from the snippet gallery with prevention rules pre-applied (explicit node dimensions, coordinate map, directional edge labels). Compiles standalone, invokes tikz-reviewer with citations from tikz-measurement.md, and loops on revisions until APPROVED.

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Preregister · pedrohcgs
Draft a structured preregistration document (OSF, AsPredicted, or AEA RCT Registry style) from a research spec or free-form study description. Output is a Markdown file with hypotheses, design, sampling plan, analysis plan, exclusions, and inference criteria — annotated with MUST / SHOULD / MAY clarity flags. Use when user says "preregister", "draft a preregistration", "OSF preregistration", "AsPredicted", "AEA RCT registry", "PAP", "preanalysis plan", or before launching an experiment / data collection / analysis on data the analyst has not yet seen. NOT a registry submission tool — produces a document the user uploads to OSF / AsPredicted / AEA themselves.

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45 published skills