stanfish06

@stanfish06 source repo

1.1k skills
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7 hours ago last updated

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Welding Joining Engineer · stanfish06 bundle
Expert-thinking profile for Welding & Joining Engineer (fabrication / procedure qualification / NDT & distortion control): Reasons from heat input, t8/5, HAZ metallurgy, and restraint/shrinkage through AWS D1.1 prequalified vs qualified WPS, ASME IX/ISO 15614 PQR essential variables, RT/UT acceptance (static vs cyclic), FSW wormhole/kissing-bond windows, and neutron/XRD/hole-drilling residual stress while treating prequalification...

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Zoom Meeting Sdk Android · stanfish06 bundle
Zoom Meeting SDK for Android native apps. Use when embedding Zoom meetings in Android with default/custom UI, PKCE + SDK auth, join/start flows, and Meeting SDK API integration.

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Zoom Meeting Sdk Windows · stanfish06 bundle
Zoom Meeting SDK for Windows - Native C++ SDK for embedding Zoom meetings into Windows desktop applications. Supports custom UI architecture with raw video/audio data, headless bots, and deep integration with meeting features. Includes SDK architecture patterns and Windows message loop handling.

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Agricultural Entomologist · stanfish06 bundle
Expert-thinking profile for Agricultural Entomologist (field scouting / IPM / resistance management (IRAC MoA) / biocontrol / pollinator protection): Reasons from pest population dynamics, economic injury levels and thresholds, and degree-day phenology through systematic scouting, IRAC mode-of-action rotation, RCBD efficacy trials, and conservation biocontrol while treating misidentification, secondary pest flares from enemy removal, resistance under repeated MoA...

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Animal Geneticist Breeder · stanfish06 bundle
Expert-thinking profile for Animal Geneticist & Breeder (quantitative genetics / BLUP- REML / genomic selection / crossbreeding systems / mate allocation): Reasons from additive genetic variance, response to selection (R = i h sigma_A), accuracy, and inbreeding depression through REML/BLUP and ssGBLUP pipelines (BLUPF90, ASReml, WOMBAT), economic selection indices, optimum-contribution mate allocation, and Interbull MACE while treating confounded contemporary groups...

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Behavioral Neuroscientist · stanfish06 bundle
Expert-thinking profile for Behavioral Neuroscientist (in vivo behavior / learning & memory paradigms / operant & maze assays / pose-tracking ethology / IACUC (ARRIVE 2.0, 3Rs)): Reasons from contingency structure, deprivation state, and latent arousal/motivation variables through Morris water maze, contextual/cued fear conditioning, operant schedules on Med Associates rigs, and DeepLabCut/SLEAP/SimBA tracking validated against ethograms, while treating thigmotaxis-as-anxiety, locomotor...

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Biobankjapan Phewas Skill · stanfish06 bundle
Fetch compact BioBank Japan PheWAS summaries for single variants by accepting rsID, GRCh38, or GRCh37 input and resolving to the required GRCh37 query. Use when a user wants concise BBJ association results for one variant

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Bioprocess Microbiologist · stanfish06 bundle
Expert-thinking profile for Bioprocess Microbiologist (wet-lab / industrial microbial fermentation & GMP biomanufacturing): Reasons from kLa/OTR–OUR balance, fed-batch μ control, off-gas RQ, van't Riet scale-up, and contamination (phage, bioburden, adventitious agents); treats antifoam kLa penalty, exponential-feed open-loop risk, and SUB vs stainless transfer as first-class failure modes.

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Browser Extension Reverse · stanfish06 bundle
Use for authorized reverse engineering of browser extensions (Chrome/Firefox) including manifest analysis, background workers, and extension-based credential or traffic logic recovery.

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Debug Zoom Integration · stanfish06 bundle
Use when isolating failures.

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Document Quality Check · stanfish06 bundle
Document Quality Check skill for Datasite deal rooms. Use this skill whenever a deal team wants to audit document quality before going live to buyers. Triggers include: "check document quality", "flag bad documents", "find password protected files", "check for blank documents", "PII check", "redaction review", "find corrupted files", "document audit", "quality check the data room", "are there any blank or broken files", "check for unredacted personal data", or any request to verify that documents in the data room are complete, accessible, and safe to share. Use when relevant before a data room goes live. Do not use for renaming files (use smart-file-renaming) or for identifying missing sections (use gap-analysis).

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Environmental Engineer · stanfish06 bundle
Expert-thinking profile for Environmental Engineer (treatment design / water-air-waste / remediation / compliance (NPDES, NAAQS, RCRA/CERCLA)): Reasons from mass balances, reaction kinetics, source-pathway-receptor transport, and permit limits through BioWin/GPS-X, SWMM, AERMOD/CALPUFF, GAC/IX and activated-sludge design, and 40 CFR Part 136 QA/QC, while treating nitrifier washout, clarifier upset, PFAS breakthrough, and remediation rebound as first-class...

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Evolutionary Biologist · stanfish06 bundle
Expert-thinking profile for Evolutionary Biologist (computational / field / experimental evolution): Reasons from coalescent demography, MSC gene-tree discordance, and selection–drift nulls; runs IQ-TREE/BEAST/ASTRAL/ANGSD workflows while treating LBA, rogue taxa, batch effects, and uncorrected genome scans as first- class failure modes.

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Experimental Physicist · stanfish06 bundle
Expert-thinking profile for Experimental Physicist (laboratory / apparatus / precision measurement): Reasons from GUM error budgets, traceable calibration chains, and multiplied signal-chain transfer functions — separating Type A and Type B uncertainty, null runs, and ELN-linked reproducibility before precision or discovery claims.

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Extremophile Biologist · stanfish06 bundle
Expert-thinking profile for Extremophile Biologist (wet-lab / field sampling / high- pressure and anaerobic cultivation / metagenomics / astrobiology analogs): Reason from physicochemical limits—T, pH, salinity, pressure, and redox—as filters on membrane chemistry, osmoadaptation, chaperones, and cultivation fidelity before astrobiology or extremozyme claims.

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Fermentation Scientist · stanfish06 bundle
Expert-thinking profile for Fermentation Scientist (wet-lab / SmF & SSF R&D / starter cultures / kinetic & metabolic modeling): Reasons from Monod–Luedeking–Piret kinetics, overflow μcrit, OTR/RQ/RAMOS analytics, DoE media optimization, and 13C-MFA/COBRApy flux bounds while treating stuck-ferment ethanol×T synergy, SSF heat/moisture gradients, and OD-as-biomass red herrings as first-class failure modes.

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Figma Generate Diagram · stanfish06 bundle
Load this skill BEFORE every `generate_diagram` tool call. Trigger whenever the user asks to create, generate, draw, render, sketch, or build a diagram — flowchart, architecture diagram, sequence diagram, ERD or entity-relationship diagram, state diagram or state machine, gantt chart, or timeline. Also trigger when the user mentions Mermaid syntax or wants a system architecture, decision tree, dependency graph, API call flow, auth handshake, schema, or pipeline visualized in FigJam. Routes to type-specific guidance, sets universal Mermaid constraints, and tells you when to use a different diagram type or skip the tool entirely (mindmaps, pie charts, class diagrams, etc.).

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Figma Generate Library · stanfish06 bundle
Build or update a professional-grade design system in Figma from a codebase. Use when the user wants to create variables/tokens, build component libraries, create individual components with proper variant sets and variable bindings, set up theming (light/dark modes), document foundations, or reconcile gaps between code and Figma. Also use when the user asks to create or generate any component in Figma — even a single one — since components require proper variable foundations, variant states, and design token bindings to be production-quality. This skill teaches WHAT to build and in WHAT ORDER — it complements the `figma-use` skill which teaches HOW to call the Plugin API. Both skills should be loaded together.

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Figma Implement Motion · stanfish06 bundle
Translates Figma motion and animations into production-ready application code. Use when implementing animation/motion from a Figma design — user mentions "implement this motion", "add animation from Figma", "animate this component", provides a Figma URL whose node is animated, or when `get_design_context` returns motion data or instructs you to call `get_motion_context`.

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Finite Element Analyst · stanfish06 bundle
Expert-thinking profile for Finite Element Analyst (computational / simulation / verification & validation): Reasons from discretization error, element technology, and constraint physics; runs mesh convergence and Richardson studies, Nastran/Abaqus/ANSYS workflows, RBE2/RBE3 and contact discipline, and ASME V&V 10 verification-before- validation reporting on governing QoIs.

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Plan Zoom Integration · stanfish06 bundle
Use when planning Zoom integrations.

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Population Geneticist · stanfish06 bundle
Expert-thinking profile for Population Geneticist (dry-lab / computational population genomics): Reasons from Wright–Fisher/coalescent demography, Weir–Cockerham FST, EIGENSOFT PCA, ADMIXTURE ancestry, ADMIXTOOLS f-statistics, and selscan XP-EHH/iHS/PBS selection scans while treating batch confounding, LD pruning choices, cryptic relatedness, and admixture-LD artifacts as first-class failure modes.

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Restoration Ecologist · stanfish06 bundle
Expert-thinking profile for Restoration Ecologist (field / reference-ecosystem planning / native planting & monitoring): Reasons from SER International Standards (reference models, six ecosystem attributes, five-star recovery, restorative continuum), BACI/BARI monitoring, INSR seed provenance and provisional seed zones, FQA/cover-weighted metrics, and passive–active–assisted recovery while treating revegetation-as-restoration...

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Rf Microwave Engineer · stanfish06 bundle
Expert-thinking profile for RF / Microwave Engineer (RF/microwave circuit design / S-parameter & EM simulation / VNA bench validation / regulatory masks (FCC, ETSI, 3GPP)): Reasons from power-wave S-parameters, Friis noise-figure cascades, and Rollett/mu stability through ADS/AWR harmonic balance, HFSS/Sonnet EM, Smith-chart matching, and TRL/SOLT-calibrated VNA/spectrum bench work while treating reference- plane errors, LO leakage and IF feedthrough, conditional instability, and...

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Secure Workflow Guide · stanfish06 bundle
Guides through Trail of Bits' 5-step secure development workflow. Runs Slither scans, checks special features (upgradeability/ERC conformance/token integration), generates visual security diagrams, helps document security properties for fuzzing/verification, and reviews manual security areas. Use when securing a smart contract end to end rather than hunting one bug, checking a project on every check-in or before deployment, triaging a Slither report, or asking where to start on smart contract security.

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Single Cell Biologist · stanfish06 bundle
Expert-thinking profile for Single-Cell Biologist (wet-lab / computational single-cell genomics): Reasons from assay chemistry, sample-level replication, cell-state manifolds, and metadata provenance; treats ambient RNA, doublets, dissociation stress, batch, and pseudoreplication as core failure modes.

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Soft Matter Physicist · stanfish06 bundle
Expert-thinking profile for Soft Matter Physicist (experimental / computational / condensed matter): Reason from kT and mesoscale structure; couple rheology (TA Instruments, Anton Paar), scattering (SANS/SAXS/DLS/XPCS), and PIV to Flory-Huggins, de Gennes scaling, jamming, and active-matter hydrodynamics.

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Spintronics Physicist · stanfish06 bundle
Expert-thinking profile for Spintronics Physicist (thin-film fab / magneto-transport / spin dynamics (ST-FMR, MTJ/SOT) / micromagnetics): Reasons from spin-orbit coupling, spin diffusion length, exchange and DMI, and spin-dependent transport through MTJ/TMR characterization, ST-FMR and harmonic-Hall torque measurement, nonlocal spin valves, and Valet-Fert and MuMax3/OOMMF modeling, while treating barrier pinholes and shunt paths...

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Latchbio Integration · stanfish06 bundle
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.

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Mathematical Analyst · stanfish06 bundle
Expert-thinking profile for Mathematical Analyst (proof-theoretic / PDE & functional analysis / harmonic analysis / operator spectral theory / symbolic-numerical (SymPy, FEniCS, Lean)): Reasons from function-space topology, convergence modes, and constant- dependent inequalities (Hölder, Sobolev, Gronwall) through compactness theorems (Rellich-Kondrachov, Banach-Alaoglu), Calderon-Zygmund and Schauder estimates, and Lax-Milgram while treating limit-integral swaps without dominated convergence...

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Mathematical Modeler · stanfish06 bundle
Expert-thinking profile for Mathematical Modeler (mechanistic modeling / ODE-PDE & agent-based / identifiability & UQ / calibration & inverse problems): Reasons from nondimensionalization, conservation/positivity laws, and minimal-viable model structure through mechanistic ODE/PDE, stochastic, and agent-based formulations, profile-likelihood and Fisher-information identifiability, and Sobol/Morris sensitivity analysis, while treating sloppy unidentifiable parameters...

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Matlab Build Toolbox · stanfish06 bundle
Execute the build plan — introspect buildfile.m, run its dependency chain, and produce the .mltbx toolbox package. Mechanical execution with no human checkpoint. Works with any buildplan shape.

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Matlab Exclude Files · stanfish06 bundle
Analyze a toolbox folder and generate a toolbox.ignore file — detects files that should not ship to end users based on what actually exists in the folder. Only suggests patterns for files found. Advisory: presents suggestions with reasons before writing.

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Matlab List Products · stanfish06 bundle
Show all installed MATLAB products and support packages for a given MATLAB installation folder. Use when listing, checking, or verifying what products or support packages are in a MATLAB installation.

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MCP Skills Extension · stanfish06 bundle
Implement and troubleshoot the MCP Skills extension (io.modelcontextprotocol/skills). Use when serving Agent Skills from an MCP server, adding skill discovery and verified loading to a host, or debugging skills/list, skills/get, and skill resource retrieval.

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Metric Pack Designer · stanfish06 bundle
Design custom metric packs for plugin-eval so teams can add local evaluation rubrics that emit schema-compatible checks and metrics. Use when the user wants their own evaluation criteria or visualizations.

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Carbon Cycle Scientist · stanfish06 bundle
Expert-thinking profile for Carbon Cycle Scientist (flux towers / atmospheric inversions / GHG inventories / isotopic constraints / Earth-system model evaluation): Reasons from carbon mass balance across reservoirs and timescales, sign conventions, and budget closure through the Global Carbon Budget protocol, ONEFlux/REddyProc eddy- covariance processing, atmospheric inversions (CarbonTracker, CAMS, GEOS-Chem), Δ¹⁴C/δ¹³C isotopic partitioning, and ILAMB model evaluation while...

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Chemical Oceanographer · stanfish06 bundle
Expert-thinking profile for Chemical Oceanographer (seawater carbonate chemistry / nutrient & trace-metal biogeochemistry / isotope tracers / shipboard & autonomous sampling...): Reasons from seawater thermodynamics, carbonate-system coupling (DIC, TA, pH, pCO2), redox hierarchies, and tracer conservation on density surfaces through CO2SYS/seacarb with Dickson CRMs, Winkler oxygen, IRMS isotopes, GO-FLO clean trace- metal sampling, and GLODAP/SOCAT/GEOTRACES synthesis while treating organic...

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Clawpathy Autoresearch · stanfish06 bundle
Eval-driven skill tuning. Given a task and an LLM-judge rubric, iteratively rewrites a SKILL.md until a downstream executor agent performs well against the judge. Low-code: all evaluation is LLM-as-judge, not deterministic Python.

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Complexa Evaluate Pdbs · stanfish06 bundle
Standalone evaluation of an existing PDB directory with Proteina-Complexa. Use when the user wants to "evaluate PDB files", "re-fold these designs", "compute interface pAE", "compute i_pLDDT for a folder", "run AF2 / RF3 / ESMFold on my designs", "score binder candidates", "designability of this folder", "scRMSD for designs", "motif RMSD for these PDBs", "complexa analysis", "complexa evaluate from a PDB directory", "evaluate from pdb dir", or to score third-party outputs (BindCraft, AlphaProteo, RFdiffusion, hand-curated decoys). Picks the correct evaluate_*.yaml config, wires ++dataset.pdb_dir and the folding backend, runs the evaluate → analyze chain, parses the result CSV, and reports pass-rates against the right result_type thresholds.

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Computational Linguist · stanfish06 bundle
Expert-thinking profile for Computational Linguist (computational / corpus & annotation / parsing & semantics): Reasons from UD/PTB formalisms, validate.py/eval.py (LAS/MLAS/ELAS), and evalb .prm settings through Stanza/UDPipe pipelines, PropBank/FrameNet/AMR/UMR layers, IAA (κ, Krippendorff α), CONDA contamination checks, and ARR reproducibility while treating tokenizer mismatch, oracle inflation, train–test leakage, and...

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Connectomics Scientist · stanfish06 bundle
Expert-thinking profile for Connectomics Scientist (computational / volume EM connectomics + collaborative proofreading): Reasons from vEM acquisition and petascale alignment through FFN/RoboEM segmentation, FlyWire/neuPrint/MICrONS/H01 graphs, and synapse-level QC while treating split/merge errors, alignment tears, false synapses, and release-version drift as first-class failure modes.

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Conservation Biologist · stanfish06 bundle
Expert-thinking profile for Conservation Biologist (field / genetics / planning / threat & recovery assessment): Reasons from IUCN Red List A–E and Green Status recovery metrics, PVA/Ne, occupancy and distance sampling (unmarked, msocc, RMark), prioritizr/Marxan SCP, Conservation Evidence and ROSES synthesis, counterfactual impact evaluation, METT/SMART PAME, and eDNA false-positive models while treating pseudoreplication, GBIF...

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Conservation Scientist · stanfish06 bundle
Expert-thinking profile for Conservation Scientist (field monitoring / conservation genetics / systematic planning / impact evaluation / IUCN assessment (Red List, Green Status)): Reasons from measurable biodiversity change, counterfactual impact, and effective population size through IUCN Red List/Green Status criteria, occupancy and PVA models (unmarked, Vortex), Marxan/prioritizr planning, and BACI/matching designs while treating detection heterogeneity, spatial pseudoreplication, REDD+...

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Constant Time Analysis · stanfish06 bundle
Detects timing side-channel vulnerabilities in cryptographic code. Use when implementing or reviewing crypto code, encountering division on secrets, secret-dependent branches, or constant-time programming questions in C, C++, Go, Rust, Swift, Java, Kotlin, C#, PHP, JavaScript, TypeScript, Python, or Ruby.

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Database Observability · stanfish06 bundle
Set up Grafana Cloud Database Observability for MySQL and PostgreSQL — enables `pg_stat_statements` / Performance Schema, creates a least-privilege monitoring user, configures the `database_observability.postgres` / `database_observability.mysql` Alloy components, ships query samples + visual explain plans + RED metrics + schema details to Grafana Cloud, and correlates slow queries with application traces via `db.statement` / `db.system` OTel attributes. Use when monitoring database performance, diagnosing slow queries, setting up DB observability for RDS / Aurora / Cloud SQL / Azure Database / self-managed instances, correlating DB metrics with APM, or alerting on query latency — even when the user says "my database is slow", "find the slow queries", or "monitor RDS" without saying "observability".

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Matlab Create Project · stanfish06 bundle
Creates a MATLAB project for an existing folder of MATLAB files using the matlab.project.* APIs via MCP. Adds all existing files, configures the project path, generates a project name/description, and creates a README.md with a function table. Prompts the user before creating any new folders. Never overwrites existing files. Use when asked: "create a project", "set up a MATLAB project", "initialize project", "make this a MATLAB project", "configure project".

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Matlab Modernize Code · stanfish06 bundle
Modernize deprecated MATLAB functions and patterns. Use when check_matlab_code or checkcode reports "not recommended" or "to be removed" warnings, when migrating legacy code, or when replacing deprecated APIs (trainNetwork, csvread, xlsread, datenum, eval, subplot, guide, optimset, wavread, svmtrain, uicontrol) with current equivalents.

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Matlab Upgrade Mex Ic · stanfish06 bundle
Upgrade C, C++, and Fortran MEX source files from the Separate Complex (SC) API to the Interleaved Complex (IC) API. Use when converting mxGetPr/mxGetPi to mxGetComplexDoubles, migrating MEX files to -R2018a, adding MX_HAS_INTERLEAVED_COMPLEX guards for SC/IC guarded builds, or modernizing legacy MEX code that uses mxGetData/mxSetData/mxGetImagData/mxSetImagData. Covers C (.c), C++ (.cpp, .cxx), and Fortran (.F, .f90) MEX functions. Triggers on: interleaved complex, IC MEX, mex upgrade, mex migration, separate complex, mxGetPi, mxGetPr replacement, -R2018a, complex MEX, Fortran MEX, .F MEX file, C++ MEX, .cpp MEX file, MEX performance, MEX slow complex, MEX call overhead, improve MEX performance complex.

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Mechatronics Engineer · stanfish06 bundle
Expert-thinking profile for Mechatronics Engineer (electromechanical co-design / motion control / FOC drives / fieldbus (EtherCAT, CiA 402) / drive safety (IEC 61800-5-2, ISO 13849)): Reasons from reflected inertia, control bandwidth, sensor physics, and thermal duty cycle through Bode loop-shaping with phase/gain margins, FOC current-velocity-position loops, plant identification, HIL, and IEC 61800-5-2 STO architecture while treating backlash and structural-mode resonance, transport-delay phase...

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Membrane Biophysicist · stanfish06 bundle
Expert-thinking profile for Membrane Biophysicist (wet-lab / computational membrane biophysics): Reasons from Helfrich elasticity, Lo/Ld phase behavior, and intrinsic curvature; builds GUVs, SLBs, nanodiscs, and BLMs; reads Laurdan GP, FRAP/FCS, aspiration, and electrophysiology while treating multilamellarity, detergent carryover, and probe misinterpretation as first-class failure modes.

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Migrate Vstest To Mtp · stanfish06
Migrates .NET test projects from VSTest to Microsoft.Testing.Platform (MTP). Use when user asks to "migrate to MTP", "switch from VSTest", "enable Microsoft.Testing.Platform", "use MTP runner", set OutputType=Exe only for test projects in Directory.Build.props, or mentions EnableMSTestRunner, EnableNUnitRunner, or UseMicrosoftTestingPlatformRunner. USE FOR: MTP behavioral differences vs VSTest (exit code 8, zero tests discovered, --ignore-exit-code, TESTINGPLATFORM_EXITCODE_IGNORE); centralizing MTP properties and OutputType=Exe on test projects via MSBuildProjectName, not IsTestProject. Supports MSTest, NUnit, xUnit.net v2 (via YTest.MTP.XUnit2), and xUnit.net v3. Covers runner enablement, CLI argument and filter translation (--filter-class/--filter-trait/--filter-query), global.json config, CI/CD updates, and extension packages. DO NOT USE FOR: migrating between test frameworks (MSTest/xUnit/NUnit), xUnit.net v2 to v3 API migration, MSTest version upgrades, TFM upgrades, or UWP/WinUI test projects.

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Molecular Pathologist · stanfish06 bundle
Expert-thinking profile for Molecular Pathologist (clinical / anatomic & molecular diagnostic pathology): Reasons from tumor cellularity, assay-specific LOD, and AMP/ASCO/CAP Tier I–IV classification; validates IHC (CAP ≥90% concordance), FISH (HER2/ALK break-apart), and NGS oncology panels under CAP/CLIA MM09 while treating FFPE deamination, HER2-low/ultralow scoring, PD-L1 TPS vs CPS, and ctDNA CHIP as first-class...

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Moody S Peer Analysis · stanfish06 bundle
Produce a Peer Analysis HTML report for a target company and its credit peers using Moody's GenAI MCP tools. Use this skill whenever the user asks to compare a company against its peers, run a peer analysis, do a credit peer comparison, generate a peer group report, or analyze relative credit positioning. Trigger even if they just name a company and mention "peers", "peer comparison", "credit comparison", "peer group", or "relative value".

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Ngs Epigenomics Peaks · stanfish06 bundle
Dispatch ATAC-seq, ChIP-seq, CUT&RUN, or CUT&Tag requests to assay-specific QC, alignment, signal-track, peak-calling, consensus, and differential peak workflows.

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Opentrons Integration · stanfish06 bundle
Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware with full access to Protocol API v2 features. Best for production Opentrons protocols, official API compatibility. For multi-vendor automation or broader equipment control use pylabrobot.

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Operations Researcher · stanfish06 bundle
Expert-thinking profile for Operations Researcher (optimization modeling / stochastic & robust programming / discrete-event simulation / VRP & scheduling / production solve ops (ERP/WMS/TMS)): Reasons from decision structure, integrality and convexity, and explicit uncertainty through LP/MIP solvers (Gurobi, CPLEX, OR-Tools CP-SAT), stochastic and Wasserstein-distributionally-robust formulations, and DES (SimPy, AnyLogic) benchmarked on Solomon/MIPLIB instances, while treating unit inconsistencies...

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Phylogenetics Builder · stanfish06 bundle
End-to-end ML phylogenetic tree inference — MSA, trimming, ModelFinder, IQ-TREE2/RAxML-NG.

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Clinicaltrials Skill · stanfish06 bundle
Submit compact ClinicalTrials.gov API v2 requests for study search, metadata, enums, search areas, and field statistics. Use when a user wants concise ClinicalTrials.gov summaries

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Crispr Screen Triage · stanfish06 bundle
Deterministic CRISPR screen hit ranking from local guide-level count tables

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Databricks Pipelines · stanfish06 bundle
Develop Lakeflow Spark Declarative Pipelines (formerly Delta Live Tables) on Databricks. Use when building batch or streaming data pipelines with Python or SQL. Invoke BEFORE starting implementation.

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Dnanexus Integration · stanfish06 bundle
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.

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Electronics Engineer · stanfish06 bundle
Expert-thinking profile for Electronics Engineer (board/IC design / mixed-signal & precision analog / PCB DFM-DFT / manufacturing test & failure analysis): Reasons from datasheet-corner device physics, signal-chain error budgets, and analog-digital return-path coupling through LTspice/IBIS-AMI simulation, ICT/boundary-scan coverage, golden-board signature comparison, and IPC/AEC-Q standards while treating ESD versus EOS overstress, MLCC DC-bias derating, reference and...

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Figma Design To Code · stanfish06
Use this skill when implementing a Figma design as code (design → code) — the read-FROM-Figma direction. Triggers: 'implement this Figma design', 'build this screen from Figma', 'turn this Figma into code', 'code this up from Figma', 'design to code', or a figma.com design URL provided alongside a codebase. Encodes the workflow for reading a node out of Figma with get_design_context and adapting its reference output to the target project — reusing existing components, tokens, and conventions, and honoring Code Connect mappings, component docs, design annotations, and design tokens by priority. Complements figma-code-connect (component mapping) and figma-generate-design / figma-use (the reverse, code → design direction).

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Health Informatician · stanfish06 bundle
Expert-thinking profile for Health Informatician (clinical / research): Reasons from semantic interoperability, provenance, and patient safety through FHIR/US Core, SNOMED-LOINC-RxNorm terminology mapping, OMOP/OHDSI ETL with DQD/Achilles, and chart- review PPV validation while treating immortal-time and confounding-by-indication bias, patient-matching/MPI failures, billing-code...

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Imaging Data Commons · stanfish06 bundle
Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Use for accessing large-scale radiology (CT, MR, PET) and pathology datasets for AI training or research. No authentication required. Query by metadata, visualize in browser, check licenses.

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Industrial Ecologist · stanfish06 bundle
Expert-thinking profile for Industrial Ecologist (MFA/SFA accounting / dynamic stock modeling / industrial symbiosis (EIP) / EEIO-LCA linkage / circular economy metrics): Reasons from mass balance closure, in-use stocks, and system boundaries through STAN (ÖNorm S 2096), dynamic MFA with Weibull lifetime distributions, EEIO tables (EXIOBASE, USEEIO) and pedigree-scored Monte Carlo while treating non-closing residuals, re-export trade hubs, downcounted informal-sector leakage, and...

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Statistical Physicist · stanfish06 bundle
Expert-thinking profile for Statistical Physicist (theoretical / computational / equilibrium and non-equilibrium statistical mechanics): Reasons from ensembles and partition functions through finite-size scaling (Binder cumulant, data collapse), Wolff/cluster MC, and RG/MCRG to Jarzynski–Crooks fluctuation theorems; uses ALPS, NetKet, WHAM, and ED/DMRG while treating critical slowing down, subleading FSS humps, and poor work-histogram overlap as...

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Stripe Best Practices · stanfish06 bundle
Guides Stripe integration decisions — API selection (Checkout Sessions vs PaymentIntents), Connect platform setup (Accounts v2, controller properties), billing/subscriptions, Treasury financial accounts, integration surfaces (Checkout, Payment Element), and migrating from deprecated Stripe APIs. Use when building, modifying, or reviewing any Stripe integration — including accepting payments, building marketplaces, integrating Stripe, processing payments, setting up subscriptions, or creating connected accounts.

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Supply Chain Security · stanfish06 bundle
Use for software supply-chain security assessment covering SBOM, SCA, CI/CD pipelines, container images, build integrity, dependency provenance, and vulnerability reachability.

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Theoretical Physicist · stanfish06 bundle
Expert-thinking profile for Theoretical Physicist (analytic theory / QFT & EFT / lattice & many-body numerics / RG & critical phenomena / GR & gravitation): Reasons from symmetries, conservation laws, effective field theory, and limiting cases through Feynman-diagram and on-shell amplitude tools, renormalization-group flow, lattice and tensor-network numerics, and the conformal bootstrap, while treating gauge-dependent artifacts, unitarity and Ward-identity violations...

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Vulnerability Writeup · stanfish06 bundle
Write up vulnerabilities from disclosure documents, rough notes, supplied findings, PoCs, source code, or Codex Security scan output into polished, self-contained, source-backed reports. Use for one vulnerability or a disclosure campaign; a Codex Security scan is optional.

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Web 3d Asset Pipeline · stanfish06 bundle
Prepare and optimize browser-game 3D assets. Use when the user asks for GLB or glTF shipping work, including Blender cleanup and export, collision or LOD setup, compression, texture packaging, and runtime validation.

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Working With Dbt Mesh · stanfish06 bundle
Implements dbt Mesh governance features (model contracts, access modifiers, groups, versioning) and multi-project collaboration with cross-project refs. Use when implementing dbt Mesh governance, setting up cross-project refs with dependencies.yml, disambiguating similarly-named models across projects, or splitting a monolithic dbt project into multiple mesh projects.

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Xarray Pandera Duckdb · stanfish06
Labeled array, schema validation, and embedded SQL analytics workflows with xarray, pandera-validation, duckdb-docs, query, read-file, and polars. Use when combining NetCDF/Zarr multidimensional arrays, DataFrame schemas, Parquet/CSV/Arrow analytics, or validation gates for scientific data pipelines.

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Astronautical Engineer · stanfish06 bundle
Expert-thinking profile for Astronautical Engineer (spacecraft / launch vehicle / mission systems engineering): Reasons from the rocket equation, staging, and mass–power–Δv budgets through NPR 7120.5/ECSS-E-ST-10 subsystem specs, CEA/CEARUN and Sutton propulsion, CLA/pogo and TVAC I&T, GMAT/STK/SPICE mission design, CCSDS TM/TC link margins, and ADCS FDIR while treating unit/frame ICD mismatches, combustion instability, and...

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Biomaterials Scientist · stanfish06 bundle
Expert-thinking profile for Biomaterials Scientist (device R&D / implants, scaffolds, drug delivery / biocompatibility (ISO 10993) / degradation & leachables / regulatory (510(k), PMA, ISO...): Reasons from material-biology interfaces, degradation-product toxicity, and mechanical mismatch to host tissue through ISO 10993 biological evaluation plans, ISO 10993-12 extract conditions, GPC/ICP/SEM characterization, and sterilization validation while treating endotoxin contamination, pH shift from acidic...

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Build Perf Diagnostics · stanfish06
Diagnose MSBuild build performance bottlenecks using binary log analysis. USE FOR: identifying why builds are slow by analyzing binlog performance summaries, detecting ResolveAssemblyReference (RAR) taking >5s, Roslyn analyzers consuming >30% of Csc time, single targets dominating >50% of build time, node utilization below 80%, excessive Copy tasks, NuGet restore running every build. Covers timeline analysis, Target/Task Performance Summary interpretation, and 7 common bottleneck categories. Use after build-perf-baseline has established measurements. DO NOT USE FOR: establishing initial baselines (use build-perf-baseline first), fixing incremental build issues (use incremental-build), parallelism tuning (use build-parallelism), non-MSBuild build systems.

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Build Zoom Meeting App · stanfish06 bundle
Use when embedding meetings.

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Cryptography Engineer · stanfish06 bundle
Expert-thinking profile for Cryptography Engineer (applied crypto / protocol design & review / key management (HSM/KMS) / standards (NIST, IETF, FIPS 140-3) / PQC migration): Reasons from explicit threat models, vetted primitives, key hierarchy, and constant-time secret handling through STRIDE threat modeling, standards (RFC 8446 TLS 1.3, FIPS 203/204, Ed25519), test vectors (Wycheproof, NIST CAVP), and protocol verifiers (Tamarin, ProVerif) while treating nonce reuse in AEAD...

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D3 Data Visualization · stanfish06 bundle
Build custom data visualizations with D3. Use when the user needs SVG or DOM-based charts, rich annotation, domain-native contextual backgrounds, data joins, custom scales or interactions, scroll-driven SVG scene states, or precise control over browser visualization behavior.

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Design Taste Frontend · stanfish06
Anti-slop frontend skill for landing pages, portfolios, and redesigns. The agent reads the brief, infers the right design direction, and ships interfaces that do not look templated. Real design systems when applicable, audit-first on redesigns, strict pre-flight check.

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Differential Geometer · stanfish06 bundle
Expert-thinking profile for Differential Geometer (theoretical / geometric analysis / gauge & index theory): Reasons from connections, curvature, and holonomy; fixes Lee vs Besse/MTW Riemann signs; uses SageManifolds/xAct/Cadabra, Chern–Weil and Atiyah–Singer index theory, and model-space checks (S^n, flat tori) while treating chart artifacts, torsion misuse, and CAS convention drift as first-class failure modes.

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Environmental Chemist · stanfish06 bundle
Expert-thinking profile for Environmental Chemist (field sampling / trace analysis (GC-MS, LC-MS/MS, ICP-MS) / fate & partitioning / remediation / regulatory (EPA SW-846, REACH)): Reasons from thermodynamic partitioning (K_oc/K_ow, Henry's law), pathway-specific half-lives, and mass balance through GC-MS/LC-MS/MS/ICP-MS analysis, EPI Suite and fugacity fate models, and EPA SW-846 QA/QC while treating blank contamination, matrix suppression, censored sub-LOD data, and unscoped transformation...

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Exercise Physiologist · stanfish06 bundle
Expert-thinking profile for Exercise Physiologist (human performance laboratory / clinical CPET / applied sport science): Reason from the Fick principle and verified gas exchange: separate VO2max, VT1/RCP, MLSS, and lactate kinetics before metabolic carts, biopsy, MRS, or periodization prescriptions.

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Figma Create New File · stanfish06
Load this skill before every `create_new_file` tool call. Trigger whenever the user wants a new blank Figma file — a new design, FigJam, or Slides file — or when you need a fresh file before calling `use_figma`. Usage — /figma-create-new-file [editorType] [fileName] (e.g. /figma-create-new-file figjam My Whiteboard, /figma-create-new-file slides Q3 Review)

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Figma Generate Design · stanfish06 bundle
Use this skill alongside figma-use when the task involves translating an application page, view, or multi-section layout into Figma. Triggers: 'write to Figma', 'create in Figma from code', 'push page to Figma', 'take this app/page and build it in Figma', 'create a screen', 'build a landing page in Figma', 'update the Figma screen to match code', 'convert this modal/dialog/drawer/panel to Figma'. This is the preferred workflow skill whenever the user wants to build or update a full page, modal, dialog, drawer, sidebar, panel, or any composed multi-section view in Figma from code or a description. Discovers design system components, variables, and styles from Code Connect files, existing screens, and library search, then imports them and assembles views incrementally section-by-section using design system tokens instead of hardcoded values.

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Find Untested Sources · stanfish06 bundle
Parse-only static analysis that pairs source files with the tests referencing them and emits JSON listing untested files ordered by API surface, each with a suggested_test_path. Roslyn engine for C#/.NET (namespace-aware), tree-sitter engine for polyglot repos (Python, TS/JS, Go, Java, Rust, Ruby). USE FOR: where to write tests next, which files have no tests, find untested code, build a source-to-test pairing map, prioritized test-gap worklist. DO NOT USE FOR: line/branch coverage or CRAP risk (use coverage-analysis); whether existing tests are strong (use test-gap-analysis or assertion-quality).

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Geotechnical Engineer · stanfish06 bundle
Expert-thinking profile for Geotechnical Engineer (design / field investigation / construction engineering): Reasons from effective stress and LRFD/EC7 limit states through GDR/GBR/FDR deliverables, shallow and deep foundations (GEC 6/10/12), excavation support (DeepEX, LPILE), ground improvement, ASCE 7 liquefaction, observational-method triggers, and FHWA pile acceptance while treating DSC claims, setup vs. blow count, and...

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Hypothesis Generation · stanfish06 bundle
Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.

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Matlab Assess Toolbox · stanfish06 bundle
Assess toolbox readiness and suggest improvements — validates help text, tests, coverage, code issues, dependencies, and function signatures. Produces a punch list and can execute fixes via delegate skills on user approval. Use before packaging or when asked to improve a toolbox.

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Theoretical Chemist · stanfish06 bundle
Expert-thinking profile for Theoretical Chemist (dynamics theory / PES construction / TST & master-equation kinetics / quantum scattering): Reasons from Hamiltonians, partition functions, and flux through dividing surfaces using validated potential energy surfaces, variational transition state theory with Eckart and small-curvature tunneling (Polyrate), and master-equation falloff solvers (MESMER, MultiWell), while treating spurious saddle imaginary...

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Thin Film Scientist · stanfish06 bundle
Expert-thinking profile for Thin-Film Scientist (deposition (PVD/CVD/ALD) / thin-film metrology / stress & adhesion / optical coatings / semiconductor fab): Reasons from nucleation and growth modes, film stress, interfacial adhesion, and conformality across topography through spectroscopic ellipsometry, XRR, Stoney wafer-curvature, XPS/RBS, and standards like ASTM E2244 and ISO 9211 while treating columnar porosity, barrier pinholes, reactive-sputter hysteresis drift, and...

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Timesfm Forecasting · stanfish06 bundle
Zero-shot time series forecasting with Google's TimesFM foundation model. Use for any univariate time series (sales, sensors, energy, vitals, weather) without training a custom model. Supports CSV/DataFrame/array inputs with point forecasts and prediction intervals. Includes a preflight system checker script to verify RAM/GPU before first use.

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Agent Browser Verify · stanfish06 bundle
Automated browser verification for dev servers. Triggers when a dev server starts to run a visual gut-check with agent-browser — verifies the page loads, checks for console errors, validates key UI elements, and reports pass/fail before continuing.

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Attack Path Analysis · stanfish06 bundle
Use when Codex is already in the attack-path-analysis phase of a security scan or the user explicitly asks to trace a security finding from source to sink and calibrate severity. Do not use as the primary trigger for full PR, commit, branch, patch, or repository scans.

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Audit Prep Assistant · stanfish06 bundle
Prepares codebases for security review using Trail of Bits' checklist. Helps set review goals, runs static analysis tools, increases test coverage, removes dead code, ensures accessibility, and generates documentation (flowcharts, user stories, inline comments). Use when preparing your own codebase to be audited by someone else, getting a repository review-ready before an external security review, deciding what to fix before auditors start, or asking what assessors need from a project. For understanding unfamiliar code you are about to audit, use audit-context-building instead.

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Behavioral Ecologist · stanfish06 bundle
Expert-thinking profile for Behavioral Ecologist (field / observational / experimental behavioral ecology): Reasons from versioned ethograms, Altmann focal/scan sampling, and activity budgets; scores with BORIS (Cohen’s κ), analyzes sequences with Markov/HMM tools, runs sham-controlled playbacks under ARRIVE 2.0, and fits GLMMs on the correct experimental unit while treating pseudoreplication, spatial autocorrelation, and...

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Bio Innovation Check · stanfish06 bundle
Step 1 of the bio-manuscript pipeline: assess research-idea novelty. Use when expanding a topic into variants/synonyms, searching PubMed/bioRxiv/arXiv q-bio, de-duplicating related papers, assigning a novelty level, and suggesting how to sharpen or reposition the idea.

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Choose Zoom Approach · stanfish06 bundle
Use when choosing architecture.

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1088 published skills · page 4 of 11