Docs & Writing

holobiomicslab Skill

Use when you have access to a project README or repository documentation (Zenodo deposit, GitHub, or local clone) describing multiple domain-specific web applications, and you need to produce a machine-readable inventory of those applications with verified live URLs and associated publications for.

holobiomicslab Skill

Use when when you have modifications to propose for a shared codebase (e.g., bug fixes, new features, or documentation updates) and need to integrate them without disrupting the main development branch.

pjt222 Skill

Remove dead code, unused imports, fix lint warnings, and normalize formatting across a codebase without changing business logic or architecture. Use when lint warnings have piled up during rapid development, unused imports and variables clutter files, dead code paths were never removed, formatting is inconsistent, or static analysis tools report fixable hygiene issues.

pjt222 Skill

Crear viñetas para paquetes R usando R Markdown o Quarto. Cubre la configuración de viñetas, la configuración YAML, las opciones de fragmentos de código, la compilación y las pruebas, y los requisitos de CRAN para viñetas. Usar al añadir un tutorial de introducción, documentar flujos de trabajo complejos que abarcan múltiples funciones, crear guías específicas de dominio, o cuando el envío a CRAN requiere documentación orientada al usuario más allá de las páginas de ayuda de funciones.

pjt222 Skill

Remove dead code, unused imports, fix lint warnings, and normalize formatting across a codebase without changing business logic or architecture. Use when lint warnings have piled up during rapid development, unused imports and variables clutter files, dead code paths were never removed, formatting is inconsistent, or static analysis tools report fixable hygiene issues.

pjt222 Skill

Guide a person in becoming a better teacher and explainer. AI coaches content structuring, audience calibration, explanation clarity, Socratic questioning technique, feedback interpretation, and reflective practice for technical presentations, documentation, and mentoring. Use when a person needs to present technical content and wants preparation coaching, wants to write better documentation or tutorials, struggles to explain concepts across expertise levels, is mentoring a colleague, or is preparing for a talk or knowledge-sharing session.

pjt222 Skill

R MarkdownまたはQuartoを使用してRパッケージのビネットを作成する。 ビネットのセットアップ、YAML設定、コードチャンクオプション、ビルドとテスト、 ビネットのCRAN要件を網羅。「はじめに」チュートリアルの追加、複数の関数にまたがる 複雑なワークフローの文書化、ドメイン固有のガイド作成、またはCRAN投稿で 関数ヘルプページを超えたユーザー向けドキュメントが必要な時に使用する。

pjt222 Skill

Formatear un informe Quarto o R Markdown siguiendo el estilo APA 7a edición. Cubre los paquetes apaquarto/papaja, página de título, resúmenes, citas, tablas, figuras y formato de referencias. Usar al escribir un artículo académico en formato APA, crear un informe de investigación en psicología o ciencias sociales, generar manuscritos reproducibles con análisis integrado, o preparar un capítulo de tesis o disertación.

pjt222 Skill

Quarto または R Markdown レポートを APA 第7版スタイルでフォーマットする。apaquarto/papaja パッケージ、タイトルページ、要約、引用、表、図、参考文献のフォーマットを網羅する。 APA形式で学術論文を執筆する時、心理学や社会科学の研究報告を作成する時、 分析が埋め込まれた再現可能な原稿を生成する時、または学位論文の章を準備する時に使用する。

pjt222 Skill

Remove dead code, unused imports, fix lint warnings, and normalize formatting across a codebase without changing business logic or architecture. Use when lint warnings have piled up during rapid development, unused imports and variables clutter files, dead code paths were never removed, formatting is inconsistent, or static analysis tools report fixable hygiene issues.

pjt222 Skill

Guide a person through structured learning of a new topic, technology, or skill. AI acts as learning coach — assessing current knowledge, designing a learning path, walking through material, testing understanding, adapting difficulty, and planning review sessions for retention. Use when a person wants to learn a new technology and does not know where to start, when someone feels overwhelmed by documentation, when a person keeps forgetting material and needs spaced repetition, or when transitioning between domains and needing a gap analysis.

pjt222 Skill

Guide a person in becoming a better teacher and explainer. AI coaches content structuring, audience calibration, explanation clarity, Socratic questioning technique, feedback interpretation, and reflective practice for technical presentations, documentation, and mentoring. Use when a person needs to present technical content and wants preparation coaching, wants to write better documentation or tutorials, struggles to explain concepts across expertise levels, is mentoring a colleague, or is preparing for a talk or knowledge-sharing session.

pjt222 Skill

使用 R Markdown 或 Quarto 创建 R 包 vignette。涵盖 vignette 设置、 YAML 配置、代码块选项、构建与测试，以及 CRAN 对 vignette 的要求。 适用于添加入门教程、记录跨多个函数的复杂工作流、创建领域特定指南， 或 CRAN 提交要求提供函数帮助页之外的用户文档的场景。

pjt222 Skill

Format citations across academic styles (APA 7, Chicago, Vancouver, IEEE) using CSL processors and R tooling. Convert between citation styles, generate in-text citations and reference lists, and validate formatting against style guides using citeproc, knitcitations, and Quarto's built-in citation engine. Use when rendering a Quarto or R Markdown document with formatted citations, converting a bibliography between citation styles, generating a standalone reference list, or setting up citation infrastructure for a multi-document project.

pjt222 Skill

Guide a person in systematic observation of systems, patterns, or phenomena. AI coaches neutral attention, field notes methodology, pattern recognition, hypothesis formation, and structured reporting for debugging, research, and system understanding. Use when a person wants to understand a system's behavior before intervening, when someone keeps jumping to conclusions and needs the discipline of observation first, when preparing an evidence-based report, or when studying team dynamics or process effectiveness through direct observation.

pjt222 Skill

按照 APA 第7版格式编排 Quarto 或 R Markdown 报告。涵盖 apaquarto/papaja 包、扉页、摘要、引用、表格、图表和参考文献格式。适用于撰写 APA 格式的学术 论文、创建心理学或社会科学研究报告、生成嵌入分析的可复现手稿，或准备学位 论文章节。

pjt222 Skill

Format citations across academic styles (APA 7, Chicago, Vancouver, IEEE) using CSL processors and R tooling. Convert between citation styles, generate in-text citations and reference lists, and validate formatting against style guides using citeproc, knitcitations, and Quarto's built-in citation engine. Use when rendering a Quarto or R Markdown document with formatted citations, converting a bibliography between citation styles, generating a standalone reference list, or setting up citation infrastructure for a multi-document project.

pjt222 Skill

Guide person in systematic observation of systems, patterns, or phenomena. AI coaches neutral attention, field notes methodology, pattern recognition, hypothesis formation, structured reporting for debugging, research, system understanding. Use when person wants to understand system behavior before intervening, when someone keeps jumping to conclusions and needs discipline of observation first, when preparing evidence-based report, or when studying team dynamics or process effectiveness through direct observation.

pjt222 Skill

Apply the fail-early (fail-fast) pattern to detect and report errors at the earliest possible point. Covers input validation with guard clauses, meaningful error messages, assertion functions, and anti-patterns that silently swallow failures. Primary examples in R with general/polyglot guidance. Use when writing functions that accept external input, adding input validation before CRAN submission, refactoring code that silently produces wrong results, reviewing PRs for error-handling quality, or hardening internal APIs against invalid arguments.

pjt222 Skill

Render jigsawR Quarto documentation site for GitHub Pages. Supports fresh renders (clearing cache), cached renders (faster), single-page renders. Uses bundled render script or direct quarto.exe invocation from WSL. Use when build full site after content changes, render single page during iterative editing, prepare documentation for release or PR, or debug render errors in Quarto .qmd files.

pjt222 Skill

Write roxygen2 documentation for R package functions, datasets, and classes. Covers all standard tags, cross-references, examples, and generating NAMESPACE entries. Follows tidyverse documentation style. Use when adding documentation to new exported functions, documenting internal helpers or datasets, documenting S3/S4/R6 classes and methods, or fixing documentation-related R CMD check notes.

pjt222 Skill

Conduct structured insect behavior observations using sampling protocols, ethogram categories, event recording, interaction logging, environmental context, and summary analysis. Covers focal animal sampling, scan sampling, all-occurrences sampling, and instantaneous sampling methods. Defines a standard insect ethogram with locomotion, feeding, grooming, mating, defense, communication, and rest categories. Includes timestamped event recording, intraspecific and interspecific interaction logging, environmental covariate documentation, and time budget analysis. Use when studying insect behavior for ecological research, documenting behavioral repertoires for a species, observing pollinator activity or predator-prey dynamics, or supporting conservation assessments with behavioral data.

pjt222 Skill

Research the etymology of a word by tracing proto-language roots, identifying cognates across language families, documenting semantic drift with dated attestations, and flagging folk etymologies. Use when investigating word origins, comparing cognate sets across related languages, charting historical meaning changes, or debunking popular but unsupported origin stories.

pjt222 Skill

Research the etymology of a word by tracing proto-language roots, identifying cognates across language families, documenting semantic drift with dated attestations, and flagging folk etymologies. Use when investigating word origins, comparing cognate sets across related languages, charting historical meaning changes, or debunking popular but unsupported origin stories.

pjt222 Skill

Compute and analyze gematria (Hebrew numerical values) using standard, ordinal, and reduced methods. Covers word-to-number conversion, isopsephy comparisons, and interpretive frameworks. Use when computing the numerical value of a Hebrew word or phrase, comparing two words for shared gematria values, studying a biblical verse or divine name for numerical correspondences, or connecting a numerical result to its position on the Tree of Life.

pjt222 Skill

Remove dead code, unused imports, fix lint warnings, and normalize formatting across a codebase without changing business logic or architecture. Use when lint warnings have piled up during rapid development, unused imports and variables clutter files, dead code paths were never removed, formatting is inconsistent, or static analysis tools report fixable hygiene issues.

pjt222 Skill

Guide a person through structured learning of a new topic, technology, or skill. AI acts as learning coach — assessing current knowledge, designing a learning path, walking through material, testing understanding, adapting difficulty, and planning review sessions for retention. Use when a person wants to learn a new technology and does not know where to start, when someone feels overwhelmed by documentation, when a person keeps forgetting material and needs spaced repetition, or when transitioning between domains and needing a gap analysis.

pjt222 Skill

Guide a person in becoming a better teacher and explainer. AI coaches content structuring, audience calibration, explanation clarity, Socratic questioning technique, feedback interpretation, and reflective practice for technical presentations, documentation, and mentoring. Use when a person needs to present technical content and wants preparation coaching, wants to write better documentation or tutorials, struggles to explain concepts across expertise levels, is mentoring a colleague, or is preparing for a talk or knowledge-sharing session.

pjt222 Skill

Create R package vignettes using R Markdown or Quarto. Covers vignette setup, YAML configuration, code chunk options, building and testing, and CRAN requirements for vignettes. Use when adding a Getting Started tutorial, documenting complex workflows spanning multiple functions, creating domain-specific guides, or when CRAN submission requires user-facing documentation beyond function help pages.

pjt222 Skill

Compute and analyze gematria (Hebrew numerical values) using standard, ordinal, and reduced methods. Covers word-to-number conversion, isopsephy comparisons, and interpretive frameworks. Use when computing the numerical value of a Hebrew word or phrase, comparing two words for shared gematria values, studying a biblical verse or divine name for numerical correspondences, or connecting a numerical result to its position on the Tree of Life.

pjt222 Skill

Remove dead code, unused imports, fix lint warnings, and normalize formatting across a codebase without changing business logic or architecture. Use when lint warnings have piled up during rapid development, unused imports and variables clutter files, dead code paths were never removed, formatting is inconsistent, or static analysis tools report fixable hygiene issues.

pjt222 Skill

Guide a person through structured learning of a new topic, technology, or skill. AI acts as learning coach — assessing current knowledge, designing a learning path, walking through material, testing understanding, adapting difficulty, and planning review sessions for retention. Use when a person wants to learn a new technology and does not know where to start, when someone feels overwhelmed by documentation, when a person keeps forgetting material and needs spaced repetition, or when transitioning between domains and needing a gap analysis.

pjt222 Skill

Guide a person in becoming a better teacher and explainer. AI coaches content structuring, audience calibration, explanation clarity, Socratic questioning technique, feedback interpretation, and reflective practice for technical presentations, documentation, and mentoring. Use when a person needs to present technical content and wants preparation coaching, wants to write better documentation or tutorials, struggles to explain concepts across expertise levels, is mentoring a colleague, or is preparing for a talk or knowledge-sharing session.

pjt222 Skill

Create R package vignettes using R Markdown or Quarto. Covers vignette setup, YAML configuration, code chunk options, building and testing, and CRAN requirements for vignettes. Use when adding a Getting Started tutorial, documenting complex workflows spanning multiple functions, creating domain-specific guides, or when CRAN submission requires user-facing documentation beyond function help pages.

pjt222 Skill

Compute and analyze gematria (Hebrew numerical values) using standard, ordinal, and reduced methods. Covers word-to-number conversion, isopsephy comparisons, and interpretive frameworks. Use when computing the numerical value of a Hebrew word or phrase, comparing two words for shared gematria values, studying a biblical verse or divine name for numerical correspondences, or connecting a numerical result to its position on the Tree of Life.

pjt222 Skill

Remove dead code, unused imports, fix lint warnings, and normalize formatting across a codebase without changing business logic or architecture. Use when lint warnings have piled up during rapid development, unused imports and variables clutter files, dead code paths were never removed, formatting is inconsistent, or static analysis tools report fixable hygiene issues.