Research & Search

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LaTeX academic paper assistant for English papers (IEEE, ACM, Springer, NeurIPS, ICML). Use when writing, reviewing, compiling, or improving English LaTeX academic papers. Use when user mentions compile, grammar, bibliography, deai, translate, title, logic, reviewer perspective, or any LaTeX paper quality improvement task. Domains: Deep Learning, Time Series, Industrial Control.

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Code organization patterns for PolicyEngine - variable naming conventions, folder structure, file organization

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Comprehensive research assistant that synthesizes information from multiple sources with citations. Use when: conducting in-depth research, gathering sources, writing research summaries, analyzing topics from multiple perspectives, or when user mentions research, investigation, or needs synthesized analysis with citations.

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Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.

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Best practices for systematic research, source evaluation, and evidence gathering

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Web search and content extraction via Parallel.ai API

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Guide users through creating M4 skills with proper structure, provenance tracking, and tier assignment. Use when users want to create a new M4 skill, document a clinical concept, or contribute a skill to the M4 skills library.

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This skill should be used when a user wants to build a structured research query interactively before starting deep research. Example queries include "/deep-research query", "리서치 쿼리 만들어줘", "research query builder", "structured research query", "쿼리 빌더".

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Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.

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Implement OpenEvidence reference architecture with best-practice project layout. Use when designing new clinical AI integrations, reviewing project structure, or establishing architecture standards for healthcare applications. Trigger with phrases like "openevidence architecture", "openevidence best practices", "openevidence project structure", "clinical ai architecture".

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Execute complex OpenEvidence migrations including EHR integration, data migration, and system transitions. Use when migrating from legacy clinical decision support systems, integrating with new EHRs, or performing major platform transitions. Trigger with phrases like "openevidence migration", "ehr integration", "migrate to openevidence", "clinical ai migration", "legacy cds migration".

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Calculate APACHE IV (Acute Physiology and Chronic Health Evaluation IV) score for ICU mortality prediction. Use for severity assessment, hospital mortality prediction, ICU benchmarking, or case-mix adjustment. eICU has pre-computed scores; MIMIC-IV requires custom implementation with diagnosis mapping challenges.

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De-slot and harmonize paper voice across `sections/*.md` without changing meaning or citation keys. **Trigger**: style harmonizer, de-template stems, remove slot phrases, discourse stems, 写作风格统一, 去槽位句式, 去生成器味. **Use when**: `writer-selfloop` is PASS but `output/WRITER_SELFLOOP_TODO.md` flags Style Smells (e.g., repeated count-based openers), or the draft reads like many sections share the same rhythm. **Skip if**: you need new evidence/citations (route to C3/C4), or you are pre-C2 (NO PROSE). **Network**: none. **Guardrail**: do not invent facts; do not add/remove/move citation keys; do not move citations across subsections; keep claim->evidence anchoring intact.

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Academic research assistant for literature reviews, paper analysis, and scholarly writing. Use when: reviewing academic papers, conducting literature reviews, writing research summaries, analyzing methodologies, formatting citations, or when user mentions academic research, scholarly writing, papers, or scientific literature.

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This skill should be used when user asks to "search the web", "fetch content from URL", "extract page content", "use Tavily search", "scrape this website", "get information from this link", or "web search for X".

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Search the web, extract URL content, and run deep research using the Parallel Chat API and Extract API. Use for ALL web searches, research queries, and general information gathering. Provides synthesized summaries with citations.

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Write competitive research proposals for NSF, NIH, DOE, and DARPA. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.

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Main skill for all Pinecone Assistant operations. Read this first! Create, manage, and chat with Pinecone Assistants for document Q&A. Automatically recognizes natural language requests like "create an assistant from my docs" or "ask my assistant about authentication" without requiring slash commands. ALWAYS invoke when using Pinecone Assistant related commands

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Expert startup business analyst specializing in market sizing, financial modeling, competitive analysis, and strategic planning for early-stage companies. Use PROACTIVELY when the user asks about market opportunity, TAM/SAM/SOM, financial projections, unit economics, competitive landscape, team planning, startup metrics, or business strategy for pre-seed through Series A startups.

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Execute OpenEvidence DeepConsult workflow for comprehensive medical research. Use when implementing deep research synthesis, complex clinical questions, or when physicians need extensive literature review. Trigger with phrases like "openevidence deepconsult", "deep research", "comprehensive evidence", "literature synthesis".

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验证研究报告中所有声明的引用准确性、来源质量和格式规范性。确保每个事实性声明都有可验证的来源，并提供来源质量评级。当最终确定研究报告、审查他人研究、发布或分享研究之前使用此技能。

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PolicyEngine variable patterns - variable creation, no hard-coding principle, federal/state separation, metadata standards

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执行完整的 7 阶段深度研究流程。接收结构化研究任务，自动部署多个并行研究智能体，生成带完整引用的综合研究报告。当用户有结构化的研究提示词时使用此技能。

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Lock an ideation run into a single-source-of-truth brief (`output/IDEA_BRIEF.md`) and a replayable multi-query plan (`queries.md`). **Trigger**: idea brief, ideation brief, research ideas, brainstorm, 找 idea, 选题, 点子, 找方向. **Use when**: the user wants research ideas and their input is long / multi-turn; you need to clarify scope+constraints before retrieval. **Skip if**: the goal is to write a survey draft directly (use `arxiv-survey*` pipelines instead). **Network**: none. **Guardrail**: do not invent papers/citations; do not start retrieval here; keep the brief structured (no long prose).

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Calculate OASIS (Oxford Acute Severity of Illness Score) for ICU patients. Use for mortality prediction with fewer variables than APACHE/SAPS, or when lab data is limited.

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将多个研究智能体的发现综合成连贯、结构化的研究报告。解决矛盾、提取共识、创建统一叙述。当多个研究智能体完成研究、需要将发现组合成统一报告、发现之间存在矛盾时使用此技能。

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Workflow and tools for adding new entries from temp.md to the section files. Includes legend format, section reference, code tools, and common pitfalls. USE FOR: Adding new resources to the knowledge base. DO NOT USE FOR: Editing existing entries or restructuring sections.

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Analyze codon usage, calculate CAI (Codon Adaptation Index), and examine synonymous codon bias using Biopython. Use when analyzing coding sequences for expression optimization or evolutionary analysis.

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Post-translational modification analysis including phosphorylation, acetylation, and ubiquitination. Covers site localization, motif analysis, and quantitative PTM analysis. Use when analyzing phosphoproteomic data or other modification-enriched samples.

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Calculate SAPS-II (Simplified Acute Physiology Score II) for ICU patients. Use for mortality prediction, severity assessment, or international ICU benchmarking.

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Sequencing patterns for Remotion - delay, trim, limit duration of items

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Multi-conversation methodology for iterative stateful work with context accumulation. Use when users request work that spans multiple sessions (research, debugging, refactoring, feature development), need to build on past progress, explicitly mention iterative work, work logs, project knowledge, or cross-conversation learning.

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Generate multiple viable solution options after research is complete, before converging on a single approach. Use when you need to explore the solution space, ask clarifying questions, and produce 3-5 distinct options to consider.

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Research a task, problem, bug, or feature by exploring the codebase. Use when starting new work, encountering bugs, or needing to understand how existing implementation relates to a task. Triggers on "research", "investigate", "look into", or requests to understand implementation before making changes.

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Demo manufacturing knowledge base for Taylored Systems. Shows how tribal knowledge gets captured and made queryable. USE WHEN demonstrating to potential clients or answering manufacturing process questions.

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Personal knowledge base integration via Obsidian vault. Provides semantic search, note retrieval, and context loading for Claude Code sessions. USE WHEN user says 'load context', 'search my notes', 'find in obsidian', 'what do I have on', 'check my vault', 'incoming notes', 'recent captures', 'semantic search', 'load project context' CAPABILITIES: - Search notes by tags, text, or semantic similarity - Load project-specific context into sessions - View incoming/unprocessed captures from Telegram - Read and create notes in Obsidian vault - Process captured content (images, documents, URLs) TOOLS: - `obs` CLI: ~/.claude/bin/obs/obs.ts - `ingest` CLI: ~/.claude/bin/ingest/ingest.ts