brycewang-stanford
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- ▌ Drug Target Interaction · brycewang-stanfordComputational drug-target interaction prediction and virtual screening
- ▌ Pharmacovigilance Guide · brycewang-stanfordAdverse drug event detection, safety signal mining, and drug monitoring
- ▌ Particle Physics Guide · brycewang-stanfordParticle physics data analysis with ROOT, HEPData, and event processing
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- ▌ Bibliometrix Guide · brycewang-stanfordPerform science mapping and bibliometric analysis with R bibliometrix
- ▌ Viaf Authority API · brycewang-stanfordDisambiguate author identities via the VIAF authority file API
- ▌ Wikidata API Guide · brycewang-stanfordQuery Wikidata SPARQL for scholarly metadata, authors, and entities
- ▌ Base Academic Search · brycewang-stanfordSearch 400M+ open access documents via the BASE search engine API
- ▌ Boolean Search Guide · brycewang-stanfordMaster Boolean operators and advanced search syntax for academic databases
- ▌ Google Scholar Guide · brycewang-stanfordAdvanced Google Scholar search techniques for comprehensive literature discovery
- ▌ Plos Open Access API · brycewang-stanfordSearch PLOS open access journals with full-text Solr-powered API
- ▌ Semantic Scholar API · brycewang-stanfordSearch papers and analyze citation graphs via OpenAlex and CrossRef APIs
- ▌ Research Paper Kb · brycewang-stanfordBuild a persistent cross-session knowledge base from academic papers
- ▌ Jupyter Notebook Guide · brycewang-stanfordBest practices for computational research notebooks with reproducible workflows
- ▌ Excalidraw Diagram Guide · brycewang-stanfordGenerate hand-drawn style Excalidraw diagrams from text descriptions
- ▌ Markdown Academic Guide · brycewang-stanfordWrite academic papers in Markdown with Pandoc for multi-format output
- ▌ Jasminum Zotero Guide · brycewang-stanfordGuide to Jasminum for retrieving CNKI Chinese academic metadata in Zotero
- ▌ Obsidian Zotero Guide · brycewang-stanfordInsert citations and notes from Zotero into Obsidian knowledge bases
- ▌ Latex Drawing Collection · brycewang-stanfordLaTeX drawing examples for Bayesian networks, tensors, and diagrams
- ▌ Thesis Writing Guide · brycewang-stanfordTemplates, formatting rules, and strategies for thesis and dissertation writing
- ▌ Econometrics R · brycewang-stanfordR-based econometric analysis for academic research. Use when writing R code for panel data, difference-in-differences, instrumental variables, spatial econometrics, or regression analysis. Covers data.table, fixest, sf, modelsummary, and publication-ready outputs.
- ▌ Science Communication · brycewang-stanford bundleTranslating technical findings for non-technical audiences. Narrative frameworks (Pyramid Principle, SCQA), plain-language translation, executive summaries, policy briefs, causal language. Use when presenting to stakeholders or reviewing deliverables
- ▌ Replicate Paper · brycewang-stanfordRun a full 6-phase autonomous replication of a biomedical/epidemiology paper against UK Biobank or similar cohort data, producing Python and R scripts plus a validated replication report. Use when asked to replicate a paper end-to-end, or when invoked as /replicate-paper [paper.pdf] [data.csv|dta].
- ▌ D3 Visualization Guide · brycewang-stanfordGuide to D3.js for building custom interactive data visualizations
- ▌ Redash Analytics Guide · brycewang-stanfordGuide to Redash for SQL-driven research data dashboards and sharing
- ▌ Time Series Guide · brycewang-stanfordApply ARIMA, VAR, cointegration, and time series econometric methods
- ▌ Meta Analysis Guide · brycewang-stanfordConduct systematic meta-analyses with effect size pooling and heterogeneity
- ▌ Med Researcher Guide · brycewang-stanfordMulti-agent system for biomedical literature review and synthesis
- ▌ Chemgraph Agent Guide · brycewang-stanfordAutomate molecular simulations with the ChemGraph agentic framework
- ▌ Biodiversity Data Guide · brycewang-stanfordBiodiversity data access, species occurrence, and ecological tools
- ▌ World Bank Data Guide · brycewang-stanfordAccess World Bank development indicators and country statistics
- ▌ Financial Data Analysis · brycewang-stanfordMethods for acquiring, cleaning, and analyzing financial datasets for research
- ▌ Finsight Research Guide · brycewang-stanfordDeep financial research with the FinSight multi-agent system
- ▌ Regulatory Compliance Guide · brycewang-stanfordRegulatory text mining, compliance research, and policy analysis tools
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- ▌ Symbolic Computation Guide · brycewang-stanfordComputer algebra systems: SymPy, SageMath, and Mathematica for research
- ▌ Astrophysics Data Guide · brycewang-stanfordAstronomical data processing with Astropy, FITS files, and sky surveys
- ▌ Quantum Computing Guide · brycewang-stanfordExplore quantum computing research with Qiskit and Cirq frameworks
- ▌ Arxiv Batch Reporting · brycewang-stanfordBatch search and report generation from arXiv preprint repository
- ▌ Arxiv Paper Processor · brycewang-stanfordProcess and analyze arXiv papers systematically for research workflows
- ▌ Nih Reporter API Guide · brycewang-stanfordSearch NIH-funded grants and research projects via RePORTER API
- ▌ Parsifal Slr Guide · brycewang-stanfordPlan and manage systematic literature reviews with Parsifal platform
- ▌ Peer Review Guide · brycewang-stanfordConduct thorough, constructive peer reviews and evaluate research papers
- ▌ R Reproducibility Guide · brycewang-stanfordCreate reproducible research workflows with R and RMarkdown/Quarto
- ▌ Sandbox Execution Guide · brycewang-stanfordSecure sandboxed code execution environments for reproducible research computing
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- ▌ Zotero Pdf2zh Guide · brycewang-stanfordPDF Chinese translation plugin for Zotero reference manager
- ▌ Jabref Reference Guide · brycewang-stanfordGuide to JabRef open-source BibTeX and BibLaTeX reference manager
- ▌ Papersgpt Zotero Guide · brycewang-stanfordAI plugin for Zotero with ChatGPT, Claude, and DeepSeek support
- ▌ Zotero Reference Guide · brycewang-stanfordPDF references add-on for enriching Zotero library metadata
- ▌ Academic Writing Refiner · brycewang-stanfordChecklist-driven academic English polishing and Chinglish correction
- ▌ Thesis Template Guide · brycewang-stanfordSet up LaTeX templates for PhD and Master's thesis documents
- ▌ Lit Review Assistant · brycewang-stanford bundleSearch, summarize, and synthesize economics literature
- ▌ Education Data Context · brycewang-stanford bundleInterpretation guidance for Urban Institute Portal datasets. Coded values (-1/-2/-3), year definitions, grade encoding, suppression, licensing, cross-source joins. Use when interpreting Portal data before analysis. Routes to source-specific skills.
- ▌ Panel Data Analyst · brycewang-stanfordExpert panel data regression analysis with fixed effects and GMM
- ▌ Power Analysis Guide · brycewang-stanfordSample size calculation and statistical power analysis guide
- ▌ Missing Data Handling · brycewang-stanfordDiagnose missing data patterns and apply appropriate imputation strategies
- ▌ Pandas Data Wrangling · brycewang-stanfordData cleaning, transformation, and exploratory analysis with pandas
- ▌ Deep Learning Papers Guide · brycewang-stanfordAnnotated deep learning paper implementations with code walkthroughs
- ▌ Clinicaltrials API V2 · brycewang-stanfordSearch and analyze clinical trials via the ClinicalTrials.gov v2 API
- ▌ Medical Imaging Guide · brycewang-stanfordMedical image analysis with deep learning for research applications
- ▌ Software Engineering Research · brycewang-stanfordGuide to software engineering research topics and methodologies
- ▌ Academic Study Methods · brycewang-stanfordEvidence-based study techniques for academic learning and retention
- ▌ Learning Science Guide · brycewang-stanfordEvidence-based learning science principles for educational research and practice
- ▌ Climate Science Guide · brycewang-stanfordClimate data analysis, modeling workflows, and carbon neutrality research met...
- ▌ Aer Consistency · brycewang-stanford bundleUse when auditing a finished or near-finished AER, AER:Insights, or AEJ manuscript for internal consistency: headline numbers across abstract, introduction, results, and tables; sample sizes; log-point and percentage-point conversions; cross-references; and in-text-citation/bibliography matching. Apply after the body and exhibits exist, before aer-referee-sim and aer-submission.
- ▌ Aer Referee Sim · brycewang-stanford bundleUse when a complete draft exists and needs an adversarial internal review before submission — simulating the AER desk screen and three referee reports with calibrated severity, scoring the paper against the editorial rubric, and producing a prioritized revise list. Apply after aer-consistency passes and before aer-submission; rerun until the simulated verdict is at least major R&R.
- ▌ Aer Replication · brycewang-stanford bundleUse when assembling the AEA Data and Code Availability deposit for an AER, AER:Insights, or AEJ acceptance, writing the README, or auditing a replication package before the AEA Data Editor review. Implements the current AEA policy, including the February 2026 Data and Code Availability Policy.
- ▌ Diverge · brycewang-stanford bundleBefore implementing, generate 3-5 conceptually distinct approaches labeled by creativity dimension (Novel, Surprising, Diverse, Conventional), then hold for selection. Brainstorm-then-select to resist defaulting to the most obvious solution.
- ▌ Figures · brycewang-stanfordDesign and format publication-quality figures: chart choice, color, scales, legends, captions, reproducibility.
- ▌ Data Collection · brycewang-stanford bundleUse when collecting data for a research project, downloading time series, building a dataset, accessing economic or social data APIs, or scraping data from a non-API source. Handles source discovery, respectful collection, local caching, and manifest documentation.
- ▌ Analyze · brycewang-stanford bundleConfirmatory hypothesis testing matched to pre-registration, with full assumption testing, effect sizes, confidence intervals, and APA 7th formatted output. Supports OLS/GLM regression, panel regression (fixest), mixed models (lme4), SEM/CFA (lavaan), meta-analysis (metafor), and delegates PROCESS models to /process-model. Reads pre-registration to align planned analyses, flags deviations, and generates decision log entries for post-hoc choices. Use when the user says "test hypotheses," "run analysis," "confirmatory," "regression," "SEM," "mediation," "mixed model," "meta-analysis," or when /eda completes. Triggers on "analyze," "hypothesis," "regression," "model," "test."
- ▌ Lifelines · brycewang-stanfordComplete survival analysis library in Python. Handles right-censored data, Kaplan-Meier curves, and Cox regression. Standard for clinical trial analysis and epidemiology.
- ▌ Five Questions · brycewang-stanford bundleDeeply analyze any empirical economics PDF using the five-question framework (五问框架): research question, identification strategy, core estimand, robustness logic, and scholarly contribution. Converts the PDF to Markdown, dispatches 5 parallel sub-agents (one per question), then compiles a 2000–3000 Chinese-character report with a transferable methodology checklist. Optimized for empirical economics papers in top journals (AER, QJE, JPE, RFS, RoF, JFE, etc.). Use this skill whenever the user wants to: - systematically analyze an empirical economics paper - apply the 五问框架 (five-question framework) to a paper - extract transferable research design elements from a top-journal paper - understand a paper's identification strategy, estimand, or robustness logic - run /five-questions, /five-q, or /paper-five-q-analysis - "帮我做五问分析", "用五问框架分析这篇论文", "analyze this paper with the five-question framework"
- ▌ Compiledeck · brycewang-stanford bundleCreate and compile beautiful Beamer presentations following the Rhetoric of Decks philosophy. Use when making slides, creating decks, or compiling .tex presentation files.
- ▌ Paper Summary · brycewang-stanfordWrites expert academic paper summaries for social science research, particularly political science and applied statistics. Use when asked to summarize, review, or create a reading summary of an academic paper, PDF, or research article. Accepts a file (PDF or text format) or a directory of papers. Produces a structured markdown summary — approximately 400–600 words — covering primary contributions, major questions and answers with point estimates, methods and data, and limitations and robustness. Includes BibTeX citation retrieved from Google Scholar and keyword metadata.
- ▌ Econ Intro Writing · brycewang-stanfordGuide for writing the introduction to an academic economics paper. Use this skill whenever the user asks for help writing, drafting, revising, or structuring an introduction to an economics paper - whether empirical micro, development economics, applied economics, or related fields. Also trigger when the user mentions "intro," "introduction section," "opening paragraphs," or asks how to motivate, frame, or present their research question in a paper. This skill synthesizes best practices from David Evans (CGDev), Keith Head, Claudia Sahm, Marc Bellemare, and Deirdre McCloskey.
- ▌ Academic Paper Verify · brycewang-stanford bundleThoroughly verify all code, tables, figures, modeling decisions, and quantitative claims in an academic paper against its source R scripts and output files. Use this skill whenever you need to audit, replicate, or verify an academic research paper - including cross-checking LaTeX tables against R output, validating econometric modeling choices, ensuring sample sizes are consistent, building a verification manifest, and running automated replication tests. Trigger this skill for any mention of: paper verification, replication check, table audit, code-paper consistency, reproducing results, verifying estimates, checking coefficients, or any variant of "does the paper match the code."
- ▌ Aer Introduction · brycewang-stanford bundleUse when drafting or rewriting the introduction of an economics manuscript targeted at AER, AER:Insights, or an AEJ, or when compressing an abstract to the mandatory 100-word limit. Implements the Keith Head / Bellemare five-paragraph formula and AER-specific formatting conventions. Apply after the body sections exist.
- ▌ Command Development · brycewang-stanford bundleThis skill should be used when the user asks to "create a slash command", "add a command", "write a custom command", "define command arguments", "use command frontmatter", "organize commands", "create command with file references", "interactive command", "use AskUserQuestion in command", or needs guidance on slash command structure, YAML frontmatter fields, dynamic arguments, bash execution in commands, user interaction patterns, or command development best practices for Claude Code.
- ▌ Econfin Idea Finder · brycewang-stanford bundle公司金融实证研究的"漏斗式选题查找器"。互动开场先后询问 (1) 研究方向、(2) 候选标题数量 N， 再扫描全球文献（已出版英文学术期刊 + SSRN working paper + 全球高校 department seminar 1 年内日程），基于 Edmans (2024) "1000 Rejections" 红线生成 N 个候选标题，**通过并行 subagent（Agent 工具）批量生成计划书 + 查新；每个 subagent 必须强制调用 Skill 工具加载 econfin-proposal 与 novelty-check 两个预设 skill 完成各自模块**，**只有当 novelty score >= 9 时（即 JF/JFE/RFS 顶刊层次），subagent 才把 proposal + 查新报告合并的 md 写入 F:\Dropbox\CC\选题大全\<研究方向短名>\（以"简短选题名称-分数"命名，子文件夹名由 Step 0 从用户输入的研究方向派生）；< 9 分的选题在 subagent 内部直接丢弃，绝不写盘、绝不输出**。当用户说"找选题"、"帮我找选题"、"想做 X 方向"、 "empirical CF idea search"、"批量生成研究计划书"、"100 ideas"、"econfin-idea-finder" 时触发。
- ▌ Marp Slides Creator · brycewang-stanford bundle专业Marp演示文稿制作助手。支持完整工作流程：工作空间初始化、内容分析、slides制作、多维度审阅、中文语言规范审阅（中文演示文稿）、PNG转换检查、终稿确定。所有产出物集中管理在项目工作文件夹中。当用户提到"制作slides"、"做PPT"、"演示文稿"、"Marp"、"幻灯片"、"presentation"等关键词时自动启用。Professional Marp presentation assistant with complete workflow: workspace initialization, content analysis, slide creation, multi-dimensional review, Chinese language review (for Chinese presentations), PNG conversion check, and finalization. All outputs organized in project workspace.
- ▌ Significance Search · brycewang-stanford bundleParallel control variable combination search via Stata. Exhaustively searches all subsets of optional controls to find the combination that maximises |t| of the independent variable. Activates when user says: "控制变量搜索", "搜控制变量", "control variable search", "跑控制变量组合", "暴力搜索", "调控制变量".
- ▌ Medical Imaging Review · brycewang-stanford bundleWrite comprehensive literature reviews for medical imaging AI research. Use when writing survey papers, systematic reviews, or literature analyses on topics like segmentation, detection, classification in CT, MRI, X-ray, ultrasound, or pathology imaging. Triggers on requests for "review paper", "survey", "literature review", "综述", "systematic review", or mentions of writing academic reviews on deep learning for medical imaging.
- ▌ Talk · brycewang-stanfordCreate and audit presentations (Beamer or Quarto RevealJS). Combines talk creation, visual audit, and compilation. Replaces /create-talk, /visual-audit, /compile-latex (for talks).
- ▌ Assess Outline · brycewang-stanfordAssesses a research paper outline (.qmd file) against structured criteria from Kosuke Imai's empirical research guide. Evaluates the abstract and section outline for: research question clarity, stated contributions, hypotheses and testable implications, data description, planned results and inferential approach, and robustness checks. Detects causal papers from the abstract and conditionally assesses identification strategy only when causal framing is present. Produces a structured markdown report with PASS/PARTIAL/FAIL assessments and actionable suggestions. Use when asked to assess, evaluate, review, or check a paper outline, abstract-and-outline, or research plan in a .qmd file.
- ▌ Latex To Typst · brycewang-stanford bundleTranslates LaTeX documents (.tex) to Typst (.typ), focusing on article-class documents. Use when asked to convert, port, migrate, or translate LaTeX to Typst. Covers document structure, text formatting, page layout, math equations and symbols, figures, tables, TikZ-to-CeTZ diagrams, bibliography, cross-references, footnotes, and code blocks. Includes comprehensive symbol mapping tables.
- ▌ Research Coordinator · brycewang-stanfordResearch Coordinator v12.0 - Human-Centered Edition (Systematic Review Automation) Context-persistent platform with 24 specialized agents across 9 categories (A-G, I, X). Features: Human Checkpoints First, VS Methodology, Paradigm Detection, Systematic Review Automation. Supports quantitative, qualitative, mixed methods research, and systematic review automation. Language: English. Responds in Korean when user input is Korean. Triggers: research question, theoretical framework, hypothesis, literature review, meta-analysis, effect size, IRB, PRISMA, statistical analysis, sample size, bias, journal, peer review, conceptual framework, visualization, systematic review, qualitative, phenomenology, grounded theory, thematic analysis, mixed methods, interview, focus group, ethnography, action research, paper retrieval, AI screening, RAG builder, humanization, AI pattern detection
- ▌ Academic Baseline · brycewang-stanfordUse when working on any empirical academic research context — paper writing, data analysis, literature review, or any task involving citations, results, or publication artifacts. Establishes non-negotiable principles that govern all other superpapers skills.
- ▌ Journal Selection · brycewang-stanfordUse when choosing a target journal for a paper, comparing journal rankings, asking "where should I submit this", or building a submission strategy across multiple journals. Field-agnostic — detects the paper's research area and suggests appropriate outlets across tiers.
- ▌ Literature Search · brycewang-stanfordUse when the user asks to search for papers, review literature, find references on a topic, verify a paper exists, or build a bibliography. Enforces web verification of every citation via web fetch to prevent hallucinated references.
- ▌ Robustness Checks · brycewang-stanfordUse when a main specification has produced a result, when preparing a paper appendix, when a reviewer requests robustness, or before declaring any empirical finding final. Guides selection of design-appropriate checks without mandating a fixed checklist.
- ▌ Visualize · brycewang-stanford bundleCreate publication-quality figures that meet journal submission standards. APA 7th defaults with journal-specific overrides. Supports interaction plots, mediation path diagrams, forest plots, marginal effects, Johnson-Neyman plots, correlation heatmaps, and coefficient plots. All figures are colorblind-safe, high DPI, and exported in multiple formats (PDF, PNG, SVG, TIFF). Use when the user says "publication figures," "journal figures," "APA figures," "visualize results," "make plots," "interaction plot," "path diagram," "forest plot," or when /analyze or /process-model or /robustness completes. Triggers on "visualize," "figure," "plot," "diagram."
- ▌ Grillme · brycewang-stanford苏格拉底诘问式研究选题Skill。通过连续追问帮你厘清研究思路、聚焦研究子领域、明确研究问题(RQ)，识别出未被研究过的新意选题。触发词：帮我选题/研究问题不清晰/想做一个有新意的论文/不断问我问题/厘清思路
- ▌ Master Thesis Review · brycewang-stanfordGenerate master's thesis review reports (硕士论文评阅意见) calibrated to a given score. Outputs academic evaluation and shortcomings/suggestions in Chinese. Trigger when user says "master thesis review" / "硕士论文评阅" / "论文评阅" / "评阅意见" / "thesis review".
- ▌ Paper Referee Revise · brycewang-stanford bundleRevise an academic paper based on journal referee reports. Reads referee comments from review report or annotated manuscript, then directly modifies main.tex one comment at a time with user approval. Generates response letter after revision. Trigger when user says "referee revise" / "paper-referee-revise" / "审稿意见修改" / "根据审稿人意见修改" / "referee report".
- ▌ Causal Ml · brycewang-stanford bundleThis skill covers causal machine learning methods in applied economics and quantitative social science. Use when implementing or choosing between modern ML-based causal estimators — including double machine learning, DML, partially linear models, interactive regression models, cross-fitting, Neyman orthogonality, debiased ML, causal forests, generalized random forest, GRF, honest causal trees, AIPW with machine learning, doubly robust with machine learning, DR-Learner, T-Learner, S-Learner, X-Learner, meta-learners, heterogeneous treatment effects, conditional average treatment effect, CATE, HTE, high-dimensional controls, LASSO controls, post-LASSO, post-double selection, Belloni-Chernozhukov-Hansen, Riesz representer, Chernozhukov, sample splitting, econml, DoubleML package, or any combination of machine learning and causal inference.
- ▌ Tools · brycewang-stanfordUtility commands — commit, compile, validate-bib, journal, context-status, deploy, learn. Replaces individual utility skills.
- ▌ Latex To Quarto · brycewang-stanford bundleConverts LaTeX article-class .tex documents to Quarto .qmd format for multi-format publishing (HTML, PDF, Word). Use when asked to convert, port, migrate, or translate a .tex LaTeX file to Quarto; when porting an academic paper or manuscript from LaTeX to Quarto; when a .tex document needs to render to HTML, Word, or Typst PDF. Covers preamble → YAML front matter, section headings, text formatting, math, citations (natbib/biblatex), cross-references, figures, tables, lists, footnotes, hyperlinks, and special characters.
- ▌ Markdown Unwrap · brycewang-stanfordUnwraps hard-wrapped markdown files so that each sentence ends with a newline instead of mid-sentence line breaks. Joins continuation lines within a paragraph into single lines, then re-breaks at sentence boundaries (period, question mark, exclamation point). Preserves blank lines, headings, fenced code blocks, block quotes, and list items. Use when asked to unwrap text, fix line breaks, reflow sentences, or clean up hard-wrapped markdown or .qmd files.