nahisaho
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- ▌ Co Scientist Clinical Nlp · nahisahoClinical NLP skill. MedSpaCy/cTAKES/scispaCy-based clinical text NER, section detection, negation detection, ICD-10/SNOMED-CT entity linking, and de-identification pipelines. Use when working with medspacy/ctakes/scispacy-based clinical text ner, section detection, negation detection.
- ▌ Co Scientist Gwas Catalog · nahisahoGWAS Catalog skill. Genome-wide association study result queries, trait-variant associations, LD analysis, and polygenic risk score construction from GWAS Catalog data. Use when working with genome-wide association study result queries, trait-variant associations, ld analysis.
- ▌ Co Scientist Latex Export · nahisahoLaTeX export skill. Markdown-to-LaTeX conversion, journal-specific LaTeX template generation, bibliography management, and publication-ready PDF compilation. Use when working with markdown-to-latex conversion, journal-specific latex template generation, bibliography management.
- ▌ Co Scientist Metabolomics · nahisahoMetabolomics skill. LC-MS/GC-MS data processing, metabolite identification, pathway mapping, biomarker discovery, and metabolomics statistical analysis pipelines. Use when working with lc-ms/gc-ms data processing, metabolite identification, pathway mapping.
- ▌ Co Scientist Paleobiology · nahisahoPaleobiology skill. Fossil record analysis, paleobiodiversity estimation, extinction rate calculation, stratigraphic data processing, and macroevolutionary pattern analysis. Use when working with fossil record analysis, paleobiodiversity estimation, extinction rate calculation.
- ▌ Co Scientist Pharmgkb Pgx · nahisahoPharmGKB pharmacogenomics skill. PharmGKB clinical annotation queries, drug-gene interaction lookup, dosing guideline retrieval, and pharmacogenomic pathway analysis. Use when working with pharmgkb clinical annotation queries, drug-gene interaction lookup, dosing guideline retrieval.
- ▌ Co Scientist Presentation · nahisahoResearch presentation and visual communication skill. Conference talk structure, poster layout, slide design, visual storytelling, and audience adaptation. Use when PRESENTING research at conferences, creating poster layouts, designing slides for talks, or adapting research content for different audiences.
- ▌ Co Scientist Radiology AI · nahisahoRadiology AI skill. Medical image classification, detection, and segmentation for radiology, DICOM handling, radiomics, and clinical AI model evaluation. Use when working with medical image classification, detection, segmentation for radiology.
- ▌ Scientific Semi Supervised Learning · nahisaho bundleSemi-supervised learning skill. Self-training, co-training, label propagation, MixMatch/FixMatch, and semi-supervised model evaluation pipelines.
- ▌ Co Learning Rubric Designer · nahisaho bundleCreates analytic rubrics with performance level descriptors and criterion weighting. Use when DESIGNING evaluation criteria, creating scoring rubrics, defining performance levels, or weighting assessment criteria.
- ▌ Co Sales Discovery Questioning · nahisahoSPIN-based discovery question sets for sales meetings. Stage-appropriate, persona-tailored questions for pain discovery and needs analysis. Use when PREPARING discovery questions, planning sales calls, building persona-specific question sets, or structuring needs analysis.
- ▌ Co Scientist Crispr Design · nahisahoCRISPR design skill. Guide RNA design, off-target analysis, CRISPR screen analysis, gene knockout/knock-in design, and editing efficiency prediction. Use when working with guide rna design, off-target analysis, crispr screen analysis.
- ▌ Co Scientist Data Analysis · nahisahoStatistical data analysis and visualization skill. Hypothesis testing, regression, ANOVA, Bayesian analysis, exploratory data analysis, and publication-quality figures. Use when ANALYZING collected data, running statistical tests, creating visualizations, interpreting results, or performing exploratory data analysis on datasets.
- ▌ Co Scientist Deep Learning · nahisahoDeep learning skill. PyTorch/TensorFlow model building, CNN/RNN/Transformer architectures, training optimization, GPU acceleration, and deep learning experiment management. Use when working with pytorch/tensorflow model building, cnn/rnn/transformer architectures, training optimization.
- ▌ Co Scientist Deep Research · nahisahoDeep research skill. Iterative literature research following the SHIKIGAMI WebResearcher paradigm (Think→Report→Action cycle) with academic database search, evidence hierarchy assessment, source tracking, and hallucination prevention. Use when working with iterative literature research following the shikigami webresearcher paradigm (think→report→action cycle) with academic database search, evidence hierarchy assessment, source tracking.
- ▌ Co Scientist Ebi Databases · nahisahoEBI databases skill. EMBL-EBI resource integration including UniProt, PDB, ChEMBL, Ensembl, InterPro, and cross-database querying strategies. Use when working with embl-ebi resource integration including uniprot, pdb, chembl.
- ▌ Co Scientist Encode Screen · nahisahoENCODE screen skill. ENCODE project data access, regulatory element annotation, epigenomic data analysis, and functional genomics screen result interpretation. Use when working with encode project data access, regulatory element annotation, epigenomic data analysis.
- ▌ Co Scientist Grant Writing · nahisahoGrant writing skill. Research proposal drafting, specific aims composition, budget justification, significance/innovation statements, and funding agency format compliance. Use when working with research proposal drafting, specific aims composition, budget justification.
- ▌ Co Scientist Healthcare AI · nahisahoHealthcare AI skill. Clinical prediction models, patient risk stratification, medical image classification, electronic health record analysis, and clinical decision support ML. Use when working with clinical prediction models, patient risk stratification, medical image classification.
- ▌ Co Scientist Md Simulation · nahisahoMolecular dynamics simulation skill. GROMACS/OpenMM simulation setup, force field selection, trajectory analysis, free energy calculations, and enhanced sampling methods. Use when working with gromacs/openmm simulation setup, force field selection, trajectory analysis.
- ▌ Co Scientist Meta Analysis · nahisahoMeta-analysis skill. Effect size calculation, random/fixed effects models, heterogeneity assessment (I², Q-test), forest plots, funnel plots, and publication bias analysis. Use when working with effect size calculation, random/fixed effects models, heterogeneity assessment (i², q-test).
- ▌ Co Scientist Ml Regression · nahisahoML regression skill. Linear/nonlinear regression, regularization (L1/L2/ElasticNet), polynomial features, cross-validation, and regression diagnostics pipelines. Use when working with linear/nonlinear regression, regularization (l1/l2/elasticnet), polynomial features.
- ▌ Co Scientist Noncoding Rna · nahisahoNon-coding RNA skill. miRNA target prediction, lncRNA functional annotation, ncRNA expression analysis, small RNA-seq processing, and RNA secondary structure prediction. Use when working with mirna target prediction, lncrna functional annotation, ncrna expression analysis.
- ▌ Co Scientist Paper Quality · nahisahoPaper quality assessment skill. Manuscript quality scoring, structural completeness checking, statistical reporting assessment, and writing clarity evaluation. Use when working with manuscript quality scoring, structural completeness checking, statistical reporting assessment.
- ▌ Co Scientist Phylogenetics · nahisahoPhylogenetics skill. Phylogenetic tree construction (ML/Bayesian), multiple sequence alignment, divergence time estimation, and evolutionary analysis pipelines. Use when working with phylogenetic tree construction (ml/bayesian), multiple sequence alignment, divergence time estimation.
- ▌ Co Scientist Plant Biology · nahisahoPlant biology skill. Plant genomics, transcriptomics, phenomics data analysis, crop improvement, and plant-specific database queries (TAIR, Phytozome). Use when working with plant genomics, transcriptomics, phenomics data analysis.
- ▌ Co Scientist Rrna Taxonomy · nahisahorRNA taxonomy skill. 16S/18S/ITS rRNA-based taxonomic classification, OTU/ASV analysis, taxonomic database queries, and microbial diversity profiling. Use when working with rrna taxonomy skill. 16s/18s/its rrna-based taxonomic classification, otu/asv analysis, taxonomic database queries.
- ▌ Co Scientist Scatac Signac · nahisahoscATAC-seq Signac skill. Single-cell ATAC-seq analysis with Signac/ArchR, peak calling, motif enrichment, chromatin accessibility clustering, and gene activity scoring. Use when working with scatac-seq signac skill. single-cell atac-seq analysis with signac/archr, peak calling, motif enrichment.
- ▌ Scientific Clinical Decision Support · nahisaho bundleClinical decision support skill. Evidence-based clinical guidelines, risk scoring models, diagnostic algorithms, treatment pathway selection, and clinical prediction rules.
- ▌ Scientific Clinical Trials Analytics · nahisaho bundleClinical trials analytics skill. Trial design comparison, enrollment simulation, interim analysis, survival analysis, and adverse event signal detection from ClinicalTrials.gov data.
- ▌ Scientific Variant Effect Prediction · nahisaho bundleVariant effect prediction skill. CADD/REVEL/AlphaMissense scoring, splice variant prediction, regulatory variant impact, and variant pathogenicity classification.
- ▌ Co Compliance Gap Analysis · nahisaho bundleDetects control and evidence gaps with severity ranking and remediation urgency. Use when ANALYZING compliance gaps, assessing control deficiencies, prioritizing remediation efforts, or preparing gap reports for management.
- ▌ Co Learning Learning Capture · nahisahoLearning capture and knowledge persistence skill. Records instructional design insights, edge cases, and design playbook updates from completed tasks. Use when FINISHING a learning design task, discovering a design pitfall, resolving an alignment error, or updating Gotchas for future sessions.
- ▌ Co Scientist Biobank Cohort · nahisahoBiobank cohort analysis skill. UK Biobank, All of Us, and large-scale cohort data integration, phenotype extraction, population stratification, and epidemiological analysis pipelines. Use when working with uk biobank, all of us, large-scale cohort data integration.
- ▌ Co Scientist Bioinformatics · nahisahoBioinformatics workflow skill. Sequence alignment, variant calling, genome assembly, annotation, phylogenetic analysis, and multi-omics data integration pipelines. Use when working with sequence alignment, variant calling, genome assembly.
- ▌ Co Scientist Civic Evidence · nahisahoCIViC clinical interpretation skill. Clinical Interpretations of Variants in Cancer (CIViC) database queries, evidence level assessment, and clinical actionability evaluation. Use when working with clinical interpretations of variants in cancer (civic) database queries, evidence level assessment, clinical actionability evaluation.
- ▌ Co Scientist Data Profiling · nahisahoData profiling skill. Automated dataset characterization, distribution analysis, data quality metrics, schema inference, and statistical summary generation. Use when working with automated dataset characterization, distribution analysis, data quality metrics.
- ▌ Co Scientist Deep Chemistry · nahisahoDeep chemistry skill. Graph neural networks for molecular property prediction, molecular generation with VAE/GAN, reaction prediction, and retrosynthesis planning. Use when working with graph neural networks for molecular property prediction, molecular generation with vae/gan, reaction prediction.
- ▌ Co Scientist Explainable AI · nahisahoExplainable AI skill. SHAP values, LIME explanations, feature importance, partial dependence plots, model-agnostic interpretability, and explanation report generation. Use when working with shap values, lime explanations, feature importance.
- ▌ Co Scientist Geo Expression · nahisahoGEO expression skill. Gene Expression Omnibus data retrieval, microarray/RNA-seq dataset processing, GEO2R analysis, and cross-platform data normalization. Use when working with gene expression omnibus data retrieval, microarray/rna-seq dataset processing, geo2r analysis.
- ▌ Co Scientist Gpu Singlecell · nahisahoGPU-accelerated single-cell skill. RAPIDS/cuML-based single-cell analysis, GPU-accelerated dimensionality reduction, clustering, and differential expression on large datasets. Use when working with rapids/cuml-based single-cell analysis, gpu-accelerated dimensionality reduction, clustering.
- ▌ Co Scientist Image Analysis · nahisahoImage analysis skill. Scientific image processing, segmentation, morphological analysis, particle detection, colocalization analysis, and quantitative microscopy pipelines. Use when working with scientific image processing, segmentation, morphological analysis.
- ▌ Co Scientist Lab Automation · nahisahoLab automation skill. Laboratory workflow automation, instrument control scripting, sample tracking, experimental protocol automation, and LIMS integration. Use when working with laboratory workflow automation, instrument control scripting, sample tracking.
- ▌ Co Scientist Marine Ecology · nahisahoMarine ecology skill. Ocean biodiversity analysis, marine species distribution modeling, fisheries data analysis, coral reef assessment, and marine environmental monitoring. Use when working with ocean biodiversity analysis, marine species distribution modeling, fisheries data analysis.
- ▌ Co Scientist Metabolic Flux · nahisahoMetabolic flux analysis skill. ¹³C metabolic flux analysis, flux balance analysis, flux variability analysis, and metabolic network constraint-based modeling. Use when working with ¹³c metabolic flux analysis, flux balance analysis, flux variability analysis.
- ▌ Co Scientist Pharos Targets · nahisahoPharos targets skill. Target Development Level (TDL) classification, understudied protein identification, Illuminating the Druggable Genome (IDG) resource queries. Use when working with target development level (tdl) classification, understudied protein identification, illuminating the druggable genome (idg) resource queries.
- ▌ Co Scientist Protein Design · nahisahoProtein design skill. De novo protein design, directed evolution simulation, stability prediction, and protein engineering workflow support. Use when working with de novo protein design, directed evolution simulation, stability prediction.
- ▌ Co Scientist Toxicology Env · nahisahoToxicology and environmental skill. Toxicity prediction, dose-response modeling, environmental risk assessment, and chemical hazard characterization. Use when working with toxicity prediction, dose-response modeling, environmental risk assessment.
- ▌ Enterprise Initiative Prioritization · nahisaho bundlePrioritizes initiatives by impact, feasibility, risk, and strategic fit.
- ▌ Scientific Epidemiology Public Health · nahisaho bundleEpidemiology and public health skill. Disease surveillance, outbreak analysis, incidence/prevalence estimation, risk factor analysis, and population health metrics.
- ▌ Scientific Materials Characterization · nahisaho bundleMaterials characterization skill. XRD pattern analysis, SEM/TEM image processing, spectroscopy data analysis (XPS/FTIR/Raman), and materials property database queries.
- ▌ Scientific Neural Architecture Search · nahisaho bundleNeural architecture search (NAS) skill. Architecture space definition, search strategy implementation, performance estimation, and efficient NAS methods (DARTS/ENAS).
- ▌ Scientific Protein Structure Analysis · nahisaho bundleProtein structure analysis skill. PDB structure retrieval, structural alignment (TM-align), binding site analysis, and structure-function relationship exploration.
- ▌ Scientific Uncertainty Quantification · nahisaho bundleUncertainty quantification skill. Aleatory/epistemic uncertainty estimation, ensemble uncertainty, conformal prediction, calibration, and uncertainty propagation.
- ▌ Architecture Planner · nahisahoConvert a confirmed objective into a concrete Agent Skills package topology and file inventory. Use when deciding structure type, role boundaries, and required artifacts.
- ▌ Co Compliance Deep Research · nahisahoRegulatory and compliance research with web_search, /research command, and MCP. Framework comparison, regulatory updates, and best practice investigation. Use when RESEARCHING regulatory requirements, comparing compliance frameworks, investigating regulatory updates, or gathering compliance best practices.
- ▌ Co Consultant Deep Research · nahisahoIterative deep research with Think→Action→Report cycle. Web search via web_search tool, /research command, and MCP. Bilingual search, source quality assessment, and cross-validation. Use when COLLECTING information from multiple sources, verifying market data, conducting competitive analysis, or gathering evidence for business decisions.
- ▌ Co Diligence Investment Memo · nahisaho bundleInvestment memo generation with thesis, evidence synthesis, risk summary, and Go/No-Go recommendation. Use when WRITING investment memos, synthesizing DD findings into recommendations, or generating decision packages for investment committees.
- ▌ Co Enterprise Deep Research · nahisahoMarket and industry research with web_search, /research command, and MCP. Benchmarking, trend analysis, and competitive intelligence for enterprise context. Use when RESEARCHING industry trends, benchmarking competitors, gathering market data, or collecting evidence for enterprise transformation decisions.
- ▌ Co Enterprise Exec Briefing · nahisaho bundleConcise executive briefings with options, trade-offs, and pyramid-structured recommendations. Use when PRODUCING executive decision packages, board presentations, leadership briefings, or transformation progress reports for C-suite audiences.
- ▌ Co Learning Feedback Analyzer · nahisahoAnalyzes learner performance patterns and generates improvement recommendations. Use when REVIEWING assessment results, identifying performance gaps, generating iteration triggers, or recommending design improvements.
- ▌ Co Scientist Active Learning · nahisahoActive learning skill. Uncertainty sampling, Query-by-Committee, expected model change, pool-based/stream-based, batch active learning, GP-based active learning with ARD-RBF kernel, dimension-adaptive convergence, stopping criteria, and model improvement pipeline. Use when working with uncertainty sampling, query-by-committee, expected model change.
- ▌ Co Scientist Cancer Genomics · nahisahoCancer genomics skill. Somatic mutation analysis, copy number variation, tumor mutational burden, microsatellite instability, driver gene identification, and oncological pathway analysis. Use when working with somatic mutation analysis, copy number variation, tumor mutational burden.
- ▌ Co Scientist Cheminformatics · nahisahoCheminformatics skill. RDKit molecular property calculation, SMILES/InChI handling, molecular fingerprints, substructure search, chemical similarity, and ADMET prediction. Use when working with rdkit molecular property calculation, smiles/inchi handling, molecular fingerprints.
- ▌ Co Scientist Critical Review · nahisahoCritical review skill. Systematic assessment of research quality, experimental rigor evaluation, statistical claim verification, and comprehensive peer review analysis. Use when working with systematic assessment of research quality, experimental rigor evaluation, statistical claim verification.
- ▌ Co Scientist Data Simulation · nahisahoData simulation skill. Synthetic data generation, Monte Carlo simulation, bootstrap resampling, parametric/non-parametric simulation, and power analysis via simulation. Use when working with synthetic data generation, monte carlo simulation, bootstrap resampling.
- ▌ Co Scientist Data Submission · nahisahoData submission skill. GEO/SRA/ENA/DDBJ data deposition, metadata preparation, compliance with FAIR principles, and repository-specific format conversion. Use when working with geo/sra/ena/ddbj data deposition, metadata preparation, compliance with fair principles.
- ▌ Co Scientist Eda Correlation · nahisahoEDA and correlation analysis skill. Exploratory data analysis, correlation matrices, distribution visualization, multivariate analysis, and automated EDA report generation. Use when working with exploratory data analysis, correlation matrices, distribution visualization.
- ▌ Co Scientist Experiment Fork · nahisahoExperiment forking skill. A/B test branching, experiment versioning, parameter variation management, and parallel experimental workflow orchestration. Use when working with a/b test branching, experiment versioning, parameter variation management.
- ▌ Co Scientist Gnomad Variants · nahisahognomAD variant skill. Population allele frequency queries, variant filtering, loss-of-function constraint metrics, and clinical variant annotation from gnomAD database. Use when working with gnomad variant skill. population allele frequency queries, variant filtering, loss-of-function constraint metrics.
- ▌ Co Scientist Latex Formatter · nahisahoLaTeX formatter skill. LaTeX document formatting, equation typesetting, table formatting, figure placement optimization, and style file customization. Use when working with latex document formatting, equation typesetting, table formatting.
- ▌ Co Scientist Medical Imaging · nahisahoMedical imaging skill. DICOM processing, image segmentation (U-Net), classification, registration, radiomics feature extraction, and clinical imaging pipeline development. Use when working with dicom processing, image segmentation (u-net), classification.
- ▌ Co Scientist Metabolic Atlas · nahisahoMetabolic atlas skill. Genome-scale metabolic model queries, metabolic pathway visualization, flux balance analysis results, and cross-species metabolic comparison. Use when working with genome-scale metabolic model queries, metabolic pathway visualization, flux balance analysis results.
- ▌ Co Scientist Nci60 Screening · nahisahoNCI-60 screening skill. NCI-60 cancer cell line panel data analysis, drug sensitivity profiling, COMPARE algorithm, and multi-drug response comparison. Use when working with nci-60 cancer cell line panel data analysis, drug sensitivity profiling, compare algorithm.
- ▌ Co Scientist Rcsb Pdb Search · nahisahoRCSB PDB search skill. Protein Data Bank structure search, advanced query construction, structure clustering, and PDB data retrieval/parsing. Use when working with protein data bank structure search, advanced query construction, structure clustering.
- ▌ Co Scientist Reproducibility · nahisahoResearch reproducibility and data management skill. Code packaging, data archiving, environment documentation, workflow automation, and FAIR data principles. Use when ENSURING reproducibility, packaging code for sharing, documenting environments, archiving datasets, or applying FAIR data principles to research outputs.
- ▌ Co Scientist Spectral Signal · nahisahoSpectral signal processing skill. Spectroscopy data analysis (UV-Vis/NMR/MS), peak detection, spectral deconvolution, and signal-to-noise optimization. Use when working with spectroscopy data analysis (uv-vis/nmr/ms), peak detection, spectral deconvolution.
- ▌ Co Scientist Systems Biology · nahisahoSystems biology skill. Network modeling, flux balance analysis, dynamical systems simulation, and multi-scale biological system analysis. Use when working with network modeling, flux balance analysis, dynamical systems simulation.
- ▌ Co Scientist Text Mining Nlp · nahisahoText mining and NLP skill. Scientific text mining, named entity recognition, relation extraction, topic modeling, and biomedical NLP pipelines. Use when working with scientific text mining, named entity recognition, relation extraction.
- ▌ Scientific Protein Interaction Network · nahisaho bundleProtein interaction network skill. STRING/BioGRID PPI data integration, interaction confidence scoring, network topology analysis, and protein complex identification.
- ▌ Co Compliance Audit Response · nahisaho bundleDrafts audit-ready responses with traceable control evidence references. Use when PREPARING audit response packages, drafting responses to auditor inquiries, assembling evidence packages, or creating audit-ready documentation.
- ▌ Co Consultant Report Writing · nahisaho bundlePyramid-principle consulting report generation with quality validation. Template selection, executive summary, numerical/citation/content/format checks. Use when WRITING consulting reports, proposals, executive summaries, business cases, or client-ready deliverables from analysis results.
- ▌ Co Diligence Learning Capture · nahisahoDD learning capture and knowledge persistence. Records deal insights, red flag patterns, and diligence methodology lessons from completed DD engagements. Use when FINISHING a DD engagement, discovering a risk assessment pitfall, or recording lessons for future due diligence work.
- ▌ Co Learning Activity Generator · nahisahoGenerates aligned learning activities with engagement strategies and differentiation. Use when DESIGNING learning experiences, creating practice exercises, planning active learning tasks, or differentiating instruction for diverse learners.
- ▌ Co Learning Curriculum Builder · nahisahoBuilds sequenced curriculum structures with scaffolding, prerequisite mapping, and pacing. Use when STRUCTURING content sequence, creating scope & sequence documents, mapping prerequisites, or designing pacing guides for a course or program.
- ▌ Co Learning Objective Designer · nahisaho bundleDesigns measurable learning objectives using Bloom's Taxonomy verbs and ABCD format. Use when DEFINING what learners should achieve, writing outcome statements, or creating competency targets for a course, module, or lesson.
- ▌ Co Scientist Academic Writing · nahisaho bundleAcademic paper writing and formatting skill. IMRaD structure, journal-specific formats (Nature, Science, ACS, IEEE, Elsevier), citation management, and abstract optimization. Use when WRITING research papers, drafting manuscripts, formatting for journal submission, structuring IMRaD sections, or optimizing abstracts and titles.
- ▌ Co Scientist Advanced Imaging · nahisahoAdvanced imaging analysis skill. Microscopy image processing, segmentation, super-resolution, 3D reconstruction, fluorescence quantification, and multi-channel analysis pipelines. Use when working with microscopy image processing, segmentation, super-resolution.
- ▌ Co Scientist Causal Inference · nahisahoCausal inference skill. DoWhy/EconML-based causal analysis, propensity score matching, instrumental variables, difference-in-differences, regression discontinuity, and DAG-based causal reasoning. Use when working with dowhy/econml-based causal analysis, propensity score matching, instrumental variables.
- ▌ Co Scientist Cellxgene Census · nahisahoCellxGene Census skill. Single-cell RNA-seq data retrieval from CZ CELLxGENE, cell type annotation, cross-dataset comparison, and gene expression atlas queries. Use when working with single-cell rna-seq data retrieval from cz cellxgene, cell type annotation, cross-dataset comparison.
- ▌ Co Scientist Citation Checker · nahisahoCitation checking skill. Reference validation, DOI verification, retraction detection, citation consistency checking, and bibliography formatting compliance. Use when working with reference validation, doi verification, retraction detection.
- ▌ Co Scientist Clingen Curation · nahisahoClinGen curation skill. Gene-disease validity classification, variant pathogenicity assessment, dosage sensitivity, and clinical actionability curation using ClinGen resources. Use when working with gene-disease validity classification, variant pathogenicity assessment, dosage sensitivity.
- ▌ Co Scientist Disease Research · nahisahoDisease research skill. Disease ontology queries, phenotype-genotype associations, clinical feature extraction, and disease mechanism pathway analysis. Use when working with disease ontology queries, phenotype-genotype associations, clinical feature extraction.
- ▌ Co Scientist Drug Repurposing · nahisahoDrug repurposing skill. Computational drug repositioning, network-based prediction, molecular similarity-based repurposing, and clinical trial evidence mining for new indications. Use when working with computational drug repositioning, network-based prediction, molecular similarity-based repurposing.
- ▌ Co Scientist Ensembl Genomics · nahisahoEnsembl genomics skill. Genome browser API queries, gene annotation retrieval, variant effect prediction, comparative genomics, and regulatory feature mapping via Ensembl REST API. Use when working with genome browser api queries, gene annotation retrieval, variant effect prediction.
- ▌ Co Scientist Ensemble Methods · nahisahoEnsemble methods skill. Random forests, gradient boosting (XGBoost/LightGBM/CatBoost), stacking, blending, voting classifiers, and ensemble model interpretation. Use when working with random forests, gradient boosting (xgboost/lightgbm/catboost), stacking.
- ▌ Co Scientist Human Cell Atlas · nahisahoHuman Cell Atlas skill. HCA data portal queries, cell type reference mapping, organ-specific cell atlases, and single-cell study integration across the Human Cell Atlas project. Use when working with hca data portal queries, cell type reference mapping, organ-specific cell atlases.
- ▌ Co Scientist Icgc Cancer Data · nahisahoICGC cancer data skill. International Cancer Genome Consortium data retrieval, pan-cancer mutation analysis, driver mutation identification, and multi-project comparison. Use when working with international cancer genome consortium data retrieval, pan-cancer mutation analysis, driver mutation identification.
- ▌ Co Scientist Learning Capture · nahisahoResearch learning capture and knowledge persistence skill. Records discoveries, edge cases, and methodological insights from completed research tasks. Use when FINISHING a research task, discovering a methodological pitfall, resolving an analysis error, or recording lessons for future research sessions.
- ▌ Co Scientist Model Monitoring · nahisahoModel monitoring skill. ML model performance tracking, data drift detection, prediction quality monitoring, model degradation alerts, and A/B test monitoring. Use when working with ml model performance tracking, data drift detection, prediction quality monitoring.