stanfish06

@stanfish06 source repo

1.1k skills
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9 hours ago last updated

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Genetic Counselor · stanfish06 bundle
Expert-thinking profile for Genetic Counselor (clinical / research): Reasons from probabilistic penetrance, Bayesian pretest probability, and patient autonomy through three-generation pedigrees, ACMG/AMP variant criteria, ClinVar/ClinGen/gnomAD, NCCN and CPIC guidelines, and cascade-testing protocols while treating VUS over-upgraded to pathogenic, screening-versus-diagnostic confusion...

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Github Actions CI · stanfish06
Authoring GitHub Actions CI/CD workflows — workflow/job/step structure, triggers, build-test matrices, dependency caching, secrets and least-privilege permissions, reusable workflows, and common Python/Node CI recipes. Use when creating or fixing .github/workflows/*.yml, setting up CI for tests/lint/build, adding a release or deploy pipeline, or speeding up/securing existing workflows. To audit agentic (AI-in-CI) workflows for injection, see agentic-actions-auditor.

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Incremental Build · stanfish06
Guide for optimizing MSBuild incremental builds. USE FOR: builds slower than expected on subsequent runs, 'nothing changed but it rebuilds anyway', diagnosing why targets re-execute unnecessarily, fixing broken no-op builds. Covers 8 common causes: missing Inputs/Outputs on custom targets, volatile properties in output paths (timestamps/GUIDs), file writes outside tracked Outputs, missing FileWrites registration, glob changes, Visual Studio Fast Up-to-Date Check (FUTDC) issues. Key diagnostic: look for 'Building target completely' vs 'Skipping target' in binlog. DO NOT USE FOR: first-time build slowness (use build-perf-baseline), parallelism issues (use build-parallelism), evaluation-phase slowness (use eval-performance), non-MSBuild build systems.

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Inorganic Chemist · stanfish06 bundle
Expert-thinking profile for Inorganic Chemist (wet-lab / coordination & organometallic synthesis / solid-state & catalysis): Reasons from electron counting, ligand field theory, and HSAB matching through Schlenk/glovebox air-sensitive synthesis, SCXRD/checkCIF validation, Evans/EPR/XANES oxidation-state assignment, and hot- filtration leaching tests while treating paramagnetic NMR overinterpretation, mystery- oil misidentification, and...

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Literature Review · stanfish06 bundle
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). Use when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).

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Materials Chemist · stanfish06 bundle
Expert-thinking profile for Materials Chemist (wet-lab / solid-state & solution synthesis / diffraction & spectroscopy): Reasons from Kröger–Vink defect equilibria, soft-chemistry routes (sol-gel, hydrothermal, ALD), and structure–property links; validates with GSAS-II/TOPAS Rietveld QPA, GIPAW ssNMR, ICSD/COD/Materials Project, and XPS/BET protocols while treating preferred orientation, AdC mis-referencing, degas artifacts, and...

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Matlab Write Help · stanfish06 bundle
Generate or improve MATLAB help text (documentation comments) for a function, class, or script file following MathWorks standards (H1 line, syntax paragraphs, See Also, 75-char lines). Read BEFORE writing MATLAB help — default patterns (Inputs:/Outputs: lists, block comments, uppercase See Also) produce non-conforming output. Use when writing, rewriting, fixing, or reviewing MATLAB help comments or function documentation.

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Medical Physicist · stanfish06 bundle
Expert-thinking profile for Medical Physicist (clinical / diagnostic & nuclear imaging / health physics): Reasons from CTDIvol/SSDE, HU accuracy, ACR/MQSA QA, TG-126 PET/CT, TG-18/TG-270 displays, and NCRP 147 shielding across CT, MRI, mammography, NM/PET, and therapy QA while treating phantom-mismatch dose claims, SUV normalization drift, display washout, and post-upgrade MEE gaps as first-class failure modes.

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Medicinal Chemist · stanfish06 bundle
Expert-thinking profile for Medicinal Chemist (lead optimization / SAR / DMPK & ADME / structure-based design / multiparameter (LLE, Fsp3, TPP)): Reasons from structure- activity relationships, lipophilicity and unbound-fraction physicochemistry, synthetic accessibility, and target-product-profile multiparameter optimization through LLE/Fsp3/QED scoring, FEP+/Glide docking validated against co-crystal and SPR data, ELN-tracked LC-MS/NMR synthesis, and DMPK...

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Meeting Scheduler · stanfish06 bundle
Handles end-to-end meeting scheduling using the Superhuman Mail MCP server — from finding available times to sending the invite or proposing times via email. Use this skill whenever someone asks to "schedule a meeting with [person]", "find a time to meet", "book a call", "set up a meeting", "when am I free to meet with [person]", "propose times to [person]", "send my availability", "create a meeting invite", "schedule a 1:1", "find overlap in our calendars", "reschedule my meeting with [person]", or any variation of coordinating a meeting. Also trigger when someone says "I need to find time with [person]", "can you check my calendar and suggest times", "set up a recurring sync", "block time for [task]", or when an email thread involves scheduling and the user wants to act on it. if someone needs help coordinating when people meet,

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Methylation Clock · stanfish06 bundle
Compute epigenetic age from DNA methylation arrays using PyAging clocks from GEO accessions or local files.

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Cellxgene Census · stanfish06 bundle
Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local single-cell data use scanpy, anndata, or scvi-tools.

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Clinical Reports · stanfish06 bundle
Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.

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Coastal Engineer · stanfish06 bundle
Expert-thinking profile for Coastal Engineer (field / computational / coastal structures & flood risk): Reasons from joint-probability surge and waves through CEM/EurOtop runup-overtopping, Van der Meer/Rock Manual armor, CERC–Van Rijn sediment budgets, and CMS/XBeach/ADCIRC–SWAN model selection while treating toe scour, armor breakage, datum mismatch (BFE vs MHHW), and downdrift impacts as first-class failure modes.

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Combinatorialist · stanfish06 bundle
Expert-thinking profile for Combinatorialist (theoretical / computational discrete mathematics): Reasons from labelled vs unlabelled enumeration, EGF/OGF and species, bijective and probabilistic proofs, Turán/Ramsey/extremal bounds, and BIBD/OA design parameters through SageMath/GAP/nauty, OEIS, House of Graphs, and Colbourn–Dinitz tables while treating isomorphism double-counting, parity barriers, and OEIS false...

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Crystallographer · stanfish06 bundle
Expert-thinking profile for Crystallographer (crystal growth / X-ray & neutron diffraction / phasing & refinement / structure validation / deposition (PDB, CSD/CCDC)): Reasons from reciprocal-space diffraction data, Bragg's law, and space- group symmetry through XDS/DIALS scaling, Phaser/SHELX phasing, Coot/Olex2 building, and MolProbity/checkCIF validation while treating merohedral twinning, wrong space groups, model-bias density unsupported by omit/polder maps, and R_free...

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Decision Mapping · stanfish06
Turn a loose idea into a sequenced map of investigation tickets, then drive them to resolution one at a time.

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Eval Performance · stanfish06
Guide for diagnosing and improving MSBuild project evaluation performance. USE FOR: builds slow before any compilation starts, high evaluation time in binlog analysis, expensive glob patterns walking large directories (node_modules, .git, bin/obj), deep import chains (>20 levels), preprocessed output >10K lines indicating heavy evaluation, property functions with file I/O ($([System.IO.File]::ReadAllText(...))), multiple evaluations per project. Covers the 5 MSBuild evaluation phases, glob optimization via DefaultItemExcludes, import chain analysis with /pp preprocessing. DO NOT USE FOR: compilation-time slowness (use build-perf-diagnostics), incremental build issues (use incremental-build), non-MSBuild build systems.

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Figma Use Figjam · stanfish06 bundle
This skill helps agents use Figma's use_figma MCP tool in the FigJam context. Can be used alongside figma-use which has foundational context for using the use_figma tool.

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Figma Use Motion · stanfish06 bundle
Motion / animation context for the `use_figma` MCP tool — animating Figma nodes via manual keyframes, animation styles, easing, and timeline duration. Load alongside figma-use whenever a task involves adding, editing, or inspecting animation on a node.

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Figma Use Slides · stanfish06 bundle
This skill helps agents use Figma's use_figma MCP tool in the Slides context. Can be used alongside figma-use which has foundational context for using the use_figma tool.

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Mobile Reverse · stanfish06 bundle
Use for authorized Android or iOS application reverse engineering and security testing, including APK or IPA analysis, runtime instrumentation, SSL pinning, and platform protection checks.

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Neuroanatomist · stanfish06 bundle
Expert-thinking profile for Neuroanatomist (wet-lab histology / tract tracing + computational atlas registration): Stereotaxic targeting and skull leveling, Paxinos/Allen atlases, anterograde/retrograde tracing, Nissl vs IHC, BrainGlobe/QuickNII registration, and injection-spread or fibers-of-passage artifacts.

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Neuroscientist · stanfish06 bundle
Expert-thinking profile for Neuroscientist (integrative / multiscale circuits / in vivo electrophysiology + optogenetics / translational (ARRIVE, BIDS/NWB)): Expert profile for neuroscientist — see AGENTS.md for field-specific methods and failure modes.

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Officecli DOCX · stanfish06
Use this skill any time a .docx file is involved -- as input, output, or both. This includes: creating Word documents, reports, letters, memos, or proposals; reading, parsing, or extracting text from any .docx file; editing, modifying, or updating existing documents; working with templates, tracked changes, comments, headers/footers, or tables of contents. Trigger whenever the user mentions 'Word doc', 'document', 'report', 'letter', 'memo', or references a .docx filename.

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Officecli PPTX · stanfish06
Use this skill any time a .pptx file is involved -- as input, output, or both. This includes: creating slide decks, pitch decks, or presentations; reading, parsing, or extracting text from any .pptx file; editing, modifying, or updating existing presentations; combining or splitting slide files; working with templates, layouts, speaker notes, or comments. Trigger whenever the user mentions 'deck', 'slides', 'presentation', 'pitch', or references a .pptx filename.

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Officecli XLSX · stanfish06
Use this skill any time a .xlsx file is involved -- as input, output, or both. This includes: creating spreadsheets, financial models, dashboards, or trackers; reading, parsing, or extracting data from any .xlsx file; editing, modifying, or updating existing workbooks; working with formulas, charts, pivot tables, or templates; importing CSV/TSV data into Excel format. Trigger whenever the user mentions 'spreadsheet', 'workbook', 'Excel', 'financial model', 'tracker', 'dashboard', or references a .xlsx/.csv filename.

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Oral Biologist · stanfish06 bundle
Expert-thinking profile for Oral Biologist (clinical / research): Reasons from biofilm dysbiosis, demineralization-remineralization balance, and host-mineral-microbe partitioning through pH-cycling and ligature models, 16S/shotgun metagenomics (DADA2/QIIME2, HOMD), micro-CT, and ICDAS/AAP-EFP staging, while treating saliva- ignored caries models, low-biomass contamination...

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Paleontologist · stanfish06 bundle
Expert-thinking profile for Paleontologist (field / museum / computational): Reason from **taphonomic filters** first: biostratinomy, diagenesis, time-averaging, and Signor–Lipps before biostratigraphic correlation, morphometrics, or phylogenetic claims.

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Parasitologist · stanfish06 bundle
Expert-thinking profile for Parasitologist (field / laboratory parasitology + public- health surveillance): Reasons from parasite life cycles, WHO NTD program logic, and diagnostic performance (Kato-Katz, qPCR/MIQE, RDTs); troubleshoots microscopy artifacts, MDA surveillance, and anthelmintic resistance.

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Pharmacologist · stanfish06 bundle
Expert-thinking profile for Pharmacologist (wet-lab / in vitro pharmacology / drug discovery): Reasons from receptor occupancy, Black–Leff τ, EC50/IC50/Kd/Ki distinctions, Schild/Cheng–Prusoff antagonism, allosteric PAM/NAM cooperativity, GPCR bias, and PK/PD linkage; interprets binding/functional/HTS via GtoPdb/ChEMBL while treating spare receptors, radioligand depletion, and assay autofluorescence as...

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Phaser 2d Game · stanfish06 bundle
Implement 2D browser games with Phaser. Use when the user wants a Phaser, TypeScript, and Vite stack for scenes, gameplay systems, cameras, sprite animation, and DOM-overlay HUD patterns.

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Profile Report · stanfish06 bundle
Unified personal genomic profile report — reads a PatientProfile JSON and synthesizes all skill results into a single "Your Genomic Profile" document.

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Protistologist · stanfish06 bundle
Expert-thinking profile for Protistologist (microscopy / 18S metabarcoding (PR2/SILVA) / culture & barcoding / HAB monitoring / paleoecology): Reasons from eukaryotic microbial diversity, trophic mode, and morphology-molecule integration through Utermöhl counts, SEM, 18S/V4 metabarcoding with PR2/SILVA, and IQ-TREE/MAFFT phylogenies while treating chimeric ASVs, kleptoplastic mixotroph misclassification, dinoflagellate multi-copy rRNA inflation, and...

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Scikit Survival · stanfish06 bundle
Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random Survival Forests, Gradient Boosting models, or Survival SVMs, evaluating survival predictions with concordance index or Brier score, handling competing risks, or implementing any survival analysis workflow with the scikit-survival library.

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Sedimentologist · stanfish06 bundle
Expert-thinking profile for Sedimentologist (field logging / facies analysis / granulometry & petrography / core-log-seismic integration / reservoir quality): Reasons from grain-scale hydraulics, facies associations, and base-level accommodation through measured sections, Folk & Ward granulometry, Bouma divisions, ichnofacies, and core-log-seismic ties while treating diagenetic overprint, bioturbation-destroyed laminae, fining-upward and shale-equals-deep-water defaults...

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Sensor Engineer · stanfish06 bundle
Expert-thinking profile for Sensor Engineer (MEMS / optical / instrumentation design and characterization): Reasons from transduction physics and error budgets through MEMS IMU Allan variance (ARW, bias instability, rate random walk), six-position and temperature calibration, piezoresistive/capacitive pressure validation, and photodiode–TIA NEP/SNR while treating vibration rectification, mag distortion, and aliased...

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Setup Local Sdk · stanfish06
Install a .NET SDK locally for safe preview testing, specific-version pinning, or reproducible team setups — without modifying the system-wide installation. USE FOR: trying .NET previews safely, testing specific SDK versions, installing MAUI or other workloads on a preview, updating or replacing an existing local SDK, creating reproducible team/CI install scripts, configuring global.json paths. DO NOT USE FOR: system-wide SDK installs, .NET hosts older than 10, runtime-only installs, or projects not using SDK-style commands.

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Sleep Scientist · stanfish06 bundle
Expert-thinking profile for Sleep Scientist (clinical / polysomnography / circadian & sleep physiology research): Reasons from Borbély Process S/C homeostatic–circadian integration, AASM v3 PSG scoring (1A/1B hypopnea rules), DLMO/forced desynchrony phase assays, MSLT/ICSD-3 hypersomnolence criteria, Cole-Kripke/Sadeh actigraphy, NSRR/SHHS cohorts, and CBT-I/CPAP trial design while treating first-night effect, actigraphy wake...

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Solar Physicist · stanfish06 bundle
Expert-thinking profile for Solar Physicist (heliophysics / MHD / multi-wavelength remote sensing / space weather (SDO, PSP)): Reasons from magnetic field topology, plasma beta, reconnection, and radiative transfer through DEM inversion, NLFFF/PFSS extrapolation, coronal seismology, and WSA-ENLIL forecasting while treating single- channel AIA temperature claims, HMI disambiguation ambiguity at the PIL, limb projection artifacts, and...

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Sprite Pipeline · stanfish06 bundle
Generate and normalize 2D sprite animations. Use when the user asks for full-strip generation from approved source frames, consistent anchor and scale normalization, or preview assets for browser-game animation.

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String Theorist · stanfish06 bundle
Expert-thinking profile for String Theorist (formal hep-th / compactification & moduli stabilization / AdS-CFT holography / swampland & string phenomenology): Reasons from worldsheet CFT anomaly cancellation, moduli stabilization, and effective-field-theory consistency through KKLT/LVS flux compactifications, KLT/CHY/BCFW amplitude methods, and AdS/CFT large-N holography while treating tadpole mismatches, runaway moduli, unstabilized de Sitter uplifts, and...

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Surface Chemist · stanfish06 bundle
Expert-thinking profile for Surface Chemist (experimental / UHV & ambient surface analysis / colloid & interface science): Reasons from interfacial thermodynamics, Langmuir/BET/D-R adsorption, and Young–Dupré wetting through XPS (ISO 15472/18118, AdC vacuum-level alignment, SESSA), contact-angle SFE (OWRK/vOCG, ASTM D7490), QCM-D viscoelastic modeling, ToF-SIMS, SAMs, and ISO 20579 handling while treating adventitious carbon, charging...

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Tissue Engineer · stanfish06 bundle
Expert-thinking profile for Tissue Engineer (wet-lab / regenerative medicine): Reasons from the TE triad, Krogh transport limits, and Engler mechanobiology through perfusion bioreactors, dECM constructive remodeling, ASTM F2150/F1635 characterization, and ARRIVE/ISO 10993/21560 translation—treating hypoxic cores, acellular controls, and biological-vs-technical replicate inflation as first-class...

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Torch Geometric · stanfish06 bundle
PyTorch Geometric (PyG) for graph neural networks — node/link/graph classification, message passing (GCN, GAT, GraphSAGE, GIN), heterogeneous graphs, neighbor sampling, and custom datasets. Use when working with torch_geometric, not for general NetworkX analytics or non-graph PyTorch models.

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Transformers JS · stanfish06 bundle
Use Transformers.js to run state-of-the-art machine learning models directly in JavaScript/TypeScript. Supports NLP (text classification, translation, summarization), computer vision (image classification, object detection), audio (speech recognition, audio classification), and multimodal tasks. Works in Node.js and browsers (with WebGPU/WASM) using pre-trained models from Hugging Face Hub.

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Treatment Plans · stanfish06 bundle
Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management. Includes SMART goal frameworks, evidence-based interventions with minimal text citations, regulatory compliance (HIPAA), and professional formatting. Prioritizes brevity and clinical actionability.

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Astrostatistician · stanfish06 bundle
Expert-thinking profile for Astrostatistician (computational / survey & cosmology inference / time-domain): Reasons from selection functions, censored flux limits, and look-elsewhere trial factors through Cobaya/emcee/dynesty cosmology, GP-coupled exoplanet inference, Landy–Szalay clustering, photo-z σNMAD calibration, and SBI (sbi/LtU-ILI) while treating Malmquist bias, prior-driven tensions, and detrend-then- fit transit...

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Bio Figure Design · stanfish06 bundle
Step 6 of the bio-manuscript pipeline: design manuscript figures panel by panel. Use when planning figure logic, panel content, supplementary figures, and draft captions, keeping figure logic synchronized with manuscript claims.

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Bio Metric System · stanfish06 bundle
Step 4 of the bio-manuscript pipeline: design the evaluation-metric system. Use when extracting quantitative and qualitative metrics from literature or adjacent fields, organizing them into groups, and explaining what each metric measures and how to compute it.

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Build Parallelism · stanfish06
Diagnose and fix under-parallelized MSBuild builds. USE WHEN a multi-project solution build is slower than expected, doesn't speed up when you add cores, pegs a single core while others idle, or you want to know why `-m` isn't helping. Note: `/maxcpucount` default is 1 (sequential) — always pass `-m` for parallel builds. Covers finding the critical path (longest serial ProjectReference chain), graph build (`/graph`), BuildInParallel, and solution filters (`.slnf`). DO NOT USE FOR: single-project builds, incremental issues (use incremental-build), compilation slowness inside one project (use build-perf-diagnostics), non-MSBuild build systems.

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Ceramics Engineer · stanfish06 bundle
Expert-thinking profile for Ceramics Engineer (processing / sintering / microstructure / electroceramics / mechanical reliability (Weibull, ASTM C-series)): Reasons from crystal chemistry, defect equilibria, sintering densification, and flaw statistics through XRD/Rietveld, dilatometry, SEM fractography, impedance spectroscopy, and Weibull analysis per ASTM C1161/C1239/C1421 while treating surface grinding flaws, Pb/alkali volatilization, closed-pore traps, and...

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Chaos Engineering · stanfish06 bundle
Design and run bounded chaos engineering experiments that test whether a system preserves measurable steady-state behavior during realistic faults. Use for resilience hypotheses, game days, fault injection, failover and recovery validation, or LitmusChaos and Chaos Mesh experiments involving pod, node, network, latency, resource, storage, DNS, time, or cloud failures. Require explicit authorization before mutating an environment, especially production; do not use as a substitute for load testing, disaster-recovery planning, penetration testing, or incident response. Pair with kubernetes-specialist when broader cluster design or workload remediation is required.

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Chemical Engineer · stanfish06 bundle
Expert-thinking profile for Chemical Engineer (process design / unit operations / separations & reaction engineering / HAZOP safety (API 520, IEC 61511) / Aspen flowsheeting): Reasons from closing mass, energy, and momentum balances and competing equilibrium/kinetics/transport regimes through Aspen Plus/HYSYS flowsheeting, McCabe- Thiele and Damkohler-based sizing, pinch analysis, and HAZOP/LOPA with API 520/521 relief, while treating azeotrope-pinched columns, reactor runaway, recycle...

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Cheminformatician · stanfish06 bundle
Expert-thinking profile for Cheminformatician (computational / medicinal-chemistry informatics / (Q)SAR): Reasons from Standard InChI identity and RDKit sanitization through ChEMBL pChEMBL harmonization, Morgan/ECFP fingerprints, scaffold splits and applicability domains, while treating tautomer collapse, KNIME-vs-Python canonicalization drift, and random-split QSAR leakage as first-class failure modes.

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Claw Ancestry Pca · stanfish06 bundle
Ancestry decomposition PCA against the Simons Genome Diversity Project

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Claw Metagenomics · stanfish06 bundle
Shotgun metagenomics profiling — taxonomy, resistome, and functional pathways

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Climate Scientist · stanfish06 bundle
Expert-thinking profile for Climate Scientist (computational / observational / paleoclimate physical climate science): Reasons from ERF/EEI energy-budget closure, AR6 forcing (WMGHG vs ERFaci), optimal fingerprinting and FAR event attribution, CMIP6/ScenarioMIP SSP workflows (ESGF, ESMValTool), and paleo proxy physics (PAGES2k, ice-core δD/CO₂, foraminifera Mg/Ca, coral Sr/Ca) while treating aerosol uncertainty, tree-ring divergence...

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Psycholinguist · stanfish06 bundle
Expert-thinking profile for Psycholinguist (experimental / neurolinguistic / computational psycholinguistics): Reasons from incremental parsing, lexical access, and prediction; designs SPR, eyetracking, VWP, and ERP studies with SUBTLEX/CELEX/MRC norms, maximal LMEMs, and OSF preregistration while treating list effects, SAT, spillover, and N400/P600 over-interpretation as first-class failure modes.

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Query Stringdb · stanfish06
Query STRING for protein-protein interactions. Use when user asks about protein interactions, interaction networks, binding partners, or interactome. Triggers on "string", "protein interaction", "interaction network", "binding partners", "interactome", "PPI".

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Screenshot CLI · stanfish06 bundle
Use when the user's host screen must be captured — the full desktop, one monitor, or a pixel region — or when a screen capture needs cropping, resizing, rotation, flipping, format conversion (png/jpeg/webp), quality control, or filters/enhancement; also when you need to enumerate connected monitors and their geometry. Not for browser-page screenshots (use claude-in-chrome).

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Soil Ecologist · stanfish06 bundle
Expert-thinking profile for Soil Ecologist (field / lab biogeochemistry / molecular soil ecology): Reasons from soil food webs (nematode EI/SI/CI), PLFA phenotypes, amoA/nirK/nifH qPCR, and 16S/ITS/metagenomics through gross 15N pool dilution and C/N priming while treating tillage, compaction, and fire recovery, compositional bias, and DNA-activity gaps as first-class failure modes.

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Soil Scientist · stanfish06 bundle
Expert-thinking profile for Soil Scientist (pedology / soil physics & chemistry / classification (USDA Taxonomy, WRB) / land evaluation): Reasons from CLORPT genetic horizonation, matric-potential water flow, and colloid exchange chemistry through Munsell pedon description, USDA Soil Taxonomy and WRB keys, buffer-pH lime calculation, and HYDRUS/RUSLE2/PHREEQC modeling while treating wrong-extractant nutrient values (Mehlich-3 vs Olsen)...

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Spectroscopist · stanfish06 bundle
Expert-thinking profile for Spectroscopist (wet-lab / optical & magnetic spectroscopy (UV-Vis/fluorescence/IR-Raman/NMR/EPR/XAS) / peak assignment & quantitation / instrument QC &...): Reasons from selection rules, line shapes as convolutions of intrinsic and instrument broadening, and Beer-Lambert linearity through UV-Vis, fluorescence, IR/Raman, NMR, CD, EPR, and XAS/XPS with calibration standards (polystyrene 1601 cm⁻¹, TMS/DSS, C 1s 284.8 eV) while treating inner filter effects, baseline...

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Track Findings · stanfish06 bundle
Track validated Codex Security findings in Linear, Jira, GitHub issues, or draft GitHub security advisories. Use it for one finding or an explicitly selected batch of up to 25 findings tracked as Linear, Jira, or GitHub issues. Includes duplicate checks, exact previews, approval-gated writes, and readback. Do not use it for scans or fixes.

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Triage Finding · stanfish06 bundle
Use when the user supplies or imports existing security findings, vulnerability reports, or security/vulnerability Jira/Linear tickets from scanners, advisories, GitHub, Atlassian Rovo, Linear, or similar backlog sources and wants static repo-impact triage. Do not use for discovery, duplicate-bug triage, validation, or fixes.

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Turingdb Graph · stanfish06 bundle
Build, query, and analyse biomedical knowledge graphs in TuringDB, a columnar graph database with git-like versioning.

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Upgrade Stripe · stanfish06 bundle
Guide for upgrading Stripe API versions and SDKs

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Weed Scientist · stanfish06 bundle
Expert-thinking profile for Weed Scientist (field efficacy trials / herbicide resistance / dose-response (drc/GR50) / IWM / MOA stewardship (HRAC/WSSA)): Reasons from the weed seed bank, population dynamics, and herbicide mode-of-action biology through log-logistic dose-response (GR50/GR90 in R drc), replicated RCB field trials with susceptible checks, molecular resistance assays (ALS sequencing, EPSPS copy number), and HRAC/WSSA-based MOA rotation while treating drift...

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Writing Skills · stanfish06 bundle
Provides a test-driven method for creating and validating agent skills. Use when creating new skills, editing existing skills, or verifying skills before deployment.

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Dentist Scientist · stanfish06 bundle
Expert-thinking profile for Dentist-Scientist (clinical / research): Reasons from oral biofilm-host ecology, tissue healing capacity, and patient-level clinical endpoints (DMFS, PD/CAL, implant survival) through PICO/PROSPERO protocols, CAMBRA and 2017 AAP/EFP staging, ISO 4049/14801 bench tests with thermocycling, and GRADE-rated reviews while treating in-vitro-to-chairside leaps...

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Design Md Library · stanfish06 bundle
Library of 74 ready-to-use DESIGN.md files — complete design systems (color tokens, type scale, components, layout, motion, do's/don'ts) reverse-engineered from real product and brand websites like Stripe, Linear, Vercel, Notion, Apple, Tesla, WIRED, and Nintendo-2001. Use when a UI task names a reference brand or an aesthetic ("make it look like Linear", "Stripe-style landing page", "premium automotive dark theme"), when you need a concrete token set to start a design system from, or when a project asks for a DESIGN.md. Vendored from VoltAgent/awesome-design-md.

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Diagram Generator · stanfish06 bundle
generate, refine, validate, and render diagrams from natural language, notes, code snippets, schemas, tables, or existing diagram source. use for flowcharts, swimlanes, sequence diagrams, state diagrams, er diagrams, class diagrams, architecture/c4-style diagrams, dependency graphs, gantt charts, mind maps, user journeys, sankey-style flows, org charts, network graphs, and other visual models. supports mermaid by default, graphviz dot for complex graph layout, plantuml for uml-heavy engineering diagrams, and svg output when direct markup is more reliable.

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Digital Forensics · stanfish06 bundle
Use for authorized digital forensics including memory dumps, disk timelines, PCAP investigation, artifact triage, and IR evidence preservation.

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Finding Discovery · stanfish06 bundle
Use when Codex is already in the finding-discovery phase of a security scan or the user explicitly asks to discover candidate security findings in a repository or code change. Do not use as the primary trigger for full PR, commit, branch, patch, or repository scans.

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Firecrawl Monitor · stanfish06 bundle
Alert by webhook/email on web changes — use for "monitor/watch/track/alert me when": recurring checks on known URLs (prefer over repeated one-off scrapes) or web-wide watches for new results (queries + goal).

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Vdr Index Setup · stanfish06 bundle
VDR Index Setup skill for Datasite deal rooms. Use this skill whenever a user wants to create, propose, design, or set up a Virtual Data Room (VDR) index or folder structure for a deal. Triggers include: "set up a data room", "create a VDR index", "build a deal room structure", "prepare the index", "set up the fileroom", "I need a data room for [deal/company]", or any request to organise or structure documents for due diligence. Also triggers when a user wants to replicate an existing deal room structure or import an index from a spreadsheet or reference deal. Use when the user is starting a new deal room or wants to customise the folder hierarchy before documents are uploaded. Do not use to audit or review an existing data room — use gap-analysis, document-quality-check, or risk-analysis-audit for that.

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Venue Templates · stanfish06 bundle
Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and grant proposals (NSF, NIH, DOE, DARPA). Use when preparing manuscripts for journal submission, conference papers, research posters, or grant proposals and need venue-specific formatting requirements and templates.

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Anesthesiologist · stanfish06 bundle
Expert-thinking profile for Anesthesiologist (perioperative medicine / airway management / hemodynamics & pharmacokinetics / regional & multimodal analgesia / perioperative trials...): Reasons from control of consciousness, analgesia, autonomic response, and oxygen delivery through the ASA Difficult Airway Algorithm, capnography and arterial-waveform trends, quantitative TOF monitoring, and ASRA/ERAS protocols while treating cannot-ventilate airways, local anesthetic systemic toxicity, malignant...

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Animal Scientist · stanfish06 bundle
Expert-thinking profile for Animal Scientist (feeding/management trials / ruminant & monogastric nutrition / ration formulation (CNCPS, NRC) / welfare & carcass science / mixed-model...): Reasons from NRC nutrient requirements, ad libitum intake, energy/protein partitioning, and genotype x environment x management through ration software (CNCPS, NDS, NRC), pen-blocked trials with mixed models (lme4, PROC MIXED), and BCS, NIR, and rumen/BHBA diagnostics while treating intake collapse, milk fat...

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Antenna Engineer · stanfish06 bundle
Expert-thinking profile for Antenna Engineer (RF simulation / antenna design / measurement & OTA): Reasons from gain–directivity–efficiency, Chu–Harrington bandwidth limits, and array factor through HFSS/CST/FEKO synthesis, IEEE 149-2021 NF/FF/CATR metrology, CTIA TRP/TIS/ECC OTA, and Friis link budgets while treating ground-plane truncation, active impedance in arrays, range ripple, and S₁₁≠pattern conflation as...

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Bio Orchestrator · stanfish06 bundle
Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.

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Bio Ppt Generate · stanfish06 bundle
Generate a presentation package from a finalized bio-manuscript proposal. Use when producing a 10-15 slide, Markdown-first presentation outline (group-meeting / 组会 style) from FINAL_PROPOSAL.md plus demo or validation results.

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Bioinformatician · stanfish06 bundle
Expert-thinking profile for Bioinformatician (dry-lab / computational genomics): Reference-build discipline (GRCh38/GENCODE/Ensembl, MANE), batch-as-covariate DE (DESeq2/edgeR), index hopping/UDI, GATK/BQSR/PLINK GWAS multiplicity, nf-core reproducibility, and scRNA-seq ambient-RNA/doublet artifacts.

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Cancer Biologist · stanfish06 bundle
Expert-thinking profile for Cancer Biologist (wet-lab / cancer genomics / preclinical oncology): Reasons from hallmark capabilities, clonal evolution, and TME context; separates driver from passenger, cell-autonomous from stromal mechanisms, and 2D artifacts from PDO/PDX-validated dependencies using TCGA, DepMap, OncoKB, and REMARK- grade biomarker logic.

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Data Scientist · stanfish06 bundle
Expert-thinking profile for Data Scientist (computational / analytics, ML & experimentation): Reasons from CRISP-DM business estimands, leakage-safe sklearn Pipelines and nested CV, SQL/warehouse semantic metrics, A/B power and SRM/AA guardrails, causal DAG covariate discipline, and Model Cards/Datasheets while treating train-test leakage, Simpson's paradox, peeking, and PSI>0.25 drift as first-class failure...

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Docs Generator · stanfish06 bundle
Creates task-oriented technical documentation with progressive disclosure. Use when writing READMEs, API docs, architecture docs, or markdown documentation. Also use this skill at the END of any completed reverse engineering, penetration testing, CTF, or security analysis task to generate a formal report in the user's project directory. Trigger keywords: 写报告, 写文档, 出报告, writeup, 技术文档, report, documentation.

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Electrochemist · stanfish06 bundle
Expert-thinking profile for Electrochemist (wet-lab / electroanalytical / energy storage): Reason from interfacial thermodynamics and transport: Nernst sets equilibrium, Butler–Volmer sets kinetics, Levich/Randles–Ševčík set mass transport, and EIS deconvolves electrode and battery interphases.

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Epidemiologist · stanfish06 bundle
Expert-thinking profile for Epidemiologist (clinical / research): Reasons from person- time, transmission dynamics, and population case definitions through epidemic curves, DAGs, renewal and SEIR models (EpiEstim, deSolve), SaTScan clustering, and STROBE/ORION/GRADE standards while treating confounding, collider stratification from test-positive conditioning, reporting-delay and...

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Evaluate Skill · stanfish06 bundle
Evaluate a local Codex skill in engineer-friendly terms. Use when the user says "evaluate this skill", "give me an analysis of the game dev skill", "audit this skill", "why did this score that way", "what should I fix first", or asks for a skill-specific report before benchmarking it.

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Food Scientist · stanfish06 bundle
Expert-thinking profile for Food Scientist (product development / process engineering / sensory / food-safety systems): Reasons from a_w and GAB isotherms, Maillard/acrylamide kinetics, HLB emulsions, TPA/rheology, ISO sensory methods, and HACCP/FSMA preventive controls while treating aw–moisture conflation, HLB-only emulsion fixes, and Arrhenius misuse as first-class failure modes.

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Marine Engineer · stanfish06 bundle
Expert-thinking profile for Marine Engineer (shipboard / design / machinery systems / class compliance): Reasons from propulsion thermodynamics, shaft BPF/torsional barred speeds, central LT/HT cooling, class machinery surveys, and ISO 15016:2025 sea trials while treating cat fines liner wear, scavenge fire, purifier mis-set, blackout PMS logic, and tropical SW fouling as first-class failure modes.

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Matlab Read Doc · stanfish06 bundle
Guides the agent to reference official MathWorks Documentation and Help. Determine correct function syntax and workflows from user guides when deeper context is needed. Minimize iterations and repetitive trial and error. Use this skill to: Identify correct syntax and configuration details. Retrieve relevant, version-specific (or release-specific) information from official documentation. Consult user guides when conceptual or workflow context is needed. Apply best practices.

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Naval Architect · stanfish06 bundle
Expert-thinking profile for Naval Architect (ship & offshore design / hydrostatics / hydrodynamics / class compliance): Reasons from displacement, Bonjean/KN–GZ stability, ITTC-78 resistance extrapolation, Wageningen B-series propulsion, WAMIT/NEMOH seakeeping, and IACS CSR scantlings while treating Froude/Re scale mismatch, free- surface GM error, Holtrop range violations, and trial CA bias as first-class failure modes.

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Ngs Bulk Rnaseq · stanfish06 bundle
Dispatch bulk RNA-seq requests to FASTQ-to-count QC or count-matrix differential-expression skills using nf-core/rnaseq, STAR, Salmon, featureCounts, MultiQC, and R/Bioconductor workflows.

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Ngs CLI Toolkit · stanfish06
The core command-line NGS workhorses for going from raw reads to variants — bwa-mem2/minimap2/bowtie2 (alignment), samtools (BAM sort/index/stats/view), bcftools (VCF call/filter/normalize/query), GATK4 (BQSR, HaplotypeCaller, best practices), and plink2 (genotype QC, PCA, GWAS). Use for read alignment, BAM/CRAM manipulation, variant calling and VCF wrangling on the command line. For Python-native BAM/VCF access use pysam; for full managed pipelines use the nf-core wrappers.

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Ngs Runtime Env · stanfish06 bundle
Check whether public NGS tools and packages already exist before downloading, installing, or running a sequencing pipeline.

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Nuclear Chemist · stanfish06 bundle
Expert-thinking profile for Nuclear Chemist (clinical / research): Reasons from decay- corrected activity ledgers, decay modes and cross sections, and ALARA dose control through Bateman/ORIGEN modeling, extraction-chromatography separations (TRU/Sr/TEVA resins), and HPGe/alpha/LSC spectroscopy while treating daughter ingrowth, generator breakthrough, spectral pile-up and sum peaks...

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Number Theorist · stanfish06 bundle
Expert-thinking profile for Number Theorist (theoretical / computational pure and arithmetic number theory): Reasons from primes, congruences, L-functions, and the Langlands web; chooses algebraic, analytic, and sieve methods; validates with SageMath/PARI/LMFDB while treating PARI stack overflows, conditional-proof leaks, and CRT moduli errors as first-class failure modes.

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Nutrigx Advisor · stanfish06 bundle
Personalised nutrition report from consumer genetic data (23andMe, AncestryDNA, VCF) — interrogates nutritionally-relevant SNPs and generates actionable dietary guidance, all computed locally.

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1088 published skills · page 7 of 11