stanfish06

@stanfish06 source repo

1.1k skills
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Ophthalmologist · stanfish06 bundle
Expert-thinking profile for Ophthalmologist (clinical / retina, glaucoma & vision trials): Reasons from structure–function pairing (OCT RNFL/CST, HVF MD/VFI, ETDRS BCVA); manages glaucoma IOP targets and anti-VEGF treat-and-extend while treating field learning effect, OCT floor effect, and 15-letter regulatory margins as first- class failure modes.

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Organic Chemist · stanfish06 bundle
Expert-thinking profile for Organic Chemist (wet-lab / synthetic and methods organic chemistry): Reasons from retrosynthesis, protecting-group strategy, and stereoelectronics; executes air-sensitive chemistry, flash/LC-MS purification, and NMR/IR/MS proof; mines SciFinder/Reaxys and reports ACS-grade experimentals with E-factor/PMI and pyrophoric safety discipline.

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Multiqc Reporter · stanfish06 bundle
Aggregates QC reports from any bioinformatics tool outputs (FastQC, fastp, STAR, Picard, samtools, etc.) into a single MultiQC HTML report plus a ClawBio markdown summary with per-sample QC metrics.

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Nanotechnologist · stanfish06 bundle
Expert-thinking profile for Nanotechnologist (fabrication / integration / nanoscale devices & scale-up): Reasons from length-scale manufacturing limits, EUV/NIL/EBL patterning, DSA defectivity, and interface-controlled integration through CD- SEM/AFM/TEM metrology, SEMI E10 yield discipline, and ISO 80004/FDA nanomaterial reporting while treating SEM shrinkage, NIL residual-layer non-uniformity, overlay error, and...

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Nature Paper2ppt · stanfish06 bundle
Build a complete Nature-style Chinese PPTX presentation from a scientific paper, preprint, PDF, article text, figure legends, or reading notes. Use for journal club, group meeting, thesis seminar, paper sharing, conference or defense decks, and Chinese requests such as 论文做PPT、论文汇报、组会PPT、文献汇报、学术汇报、做幻灯片、读书报告PPT. It classifies paper type, builds an evidence-led story, selects key figures, writes Chinese slide content and speaker notes, creates the actual .pptx, and runs corrective QA for complete figure crops, stable alignment, text overflow, and de-templated Chinese academic expression. Also trigger when improving weak paper-to-PPT output with cropped figures, loose alignment, obvious AI-style wording, or heavy manual rework.

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Netlify Identity · stanfish06 bundle
Use when the task involves authentication, user signups, logins, password recovery, OAuth providers, role-based access control, or protecting routes and functions. Use `@netlify/identity`. Never use `netlify-identity-widget` or `gotrue-js` — they are deprecated.

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Network Engineer · stanfish06 bundle
Expert-thinking profile for Network Engineer (operations / design — campus, WAN, datacenter fabric): Reasons from OSI layering, control vs. data plane, and path symmetry through BGP policy (TCP/179, communities, RR), OSPF areas/LSA adjacency, 802.1Q VLAN/trunk design, spine-leaf Clos/VXLAN-EVPN fabrics, and L1→L7 troubleshooting while treating asymmetric routing, MTU black holes, native-VLAN mismatch, and BGP...

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Ngs Bcl To Fastq · stanfish06 bundle
Validate Illumina BCL run folders and sample sheets, plan demultiplexing, review index/UMI/lane choices, run BCL-to-FASTQ conversion, and interpret demux metrics while surfacing license/download boundaries.

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Nuclear Engineer · stanfish06 bundle
Expert-thinking profile for Nuclear Engineer (reactor physics / thermal hydraulics / safety & licensing): Reasons from k_eff, DNBR/CHF margins, xenon transients, and defense-in-depth; couples SCALE/MCNP, PARCS, TRACE/RELAP, and MELCOR to 10 CFR and PRA; treats nodalization, nuclear-data, and CHF-correlation uncertainties as first- class failure modes.

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Pathway Enricher · stanfish06 bundle
Gene-set pathway enrichment analysis using Enrichr — queries KEGG, GO (BP/MF/CC), Reactome, WikiPathways, MSigDB, and Disease Ontology. Produces ranked pathway tables, interactive bubble charts, and a reproducible Markdown report.

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Pharmgx Reporter · stanfish06 bundle
Pharmacogenomic report from DTC genetic data (23andMe/AncestryDNA) — 12 genes, 31 SNPs, 51 drugs

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Physical Chemist · stanfish06 bundle
Expert-thinking profile for Physical Chemist (wet-lab / calorimetry (DSC, ITC) / spectroscopy (FTIR, Raman, UV-vis) / kinetics / statistical thermodynamics): Reasons from state functions, partition functions, rate laws, and selection rules through Eyring and van't Hoff fits, DSC/ITC calorimetry, and stopped-flow spectroscopy anchored to NIST thermochemical data, while treating inner-filter and aggregation artifacts, curved Arrhenius plots from mechanism change, and...

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Plasma Physicist · stanfish06 bundle
Expert-thinking profile for Plasma Physicist (fusion + space plasma / MHD & gyrokinetic / PIC simulation / tokamak-stellarator diagnostics / reconnection): Reasons from collective scales (Debye length, plasma frequency), dimensionless regime parameters (beta, collisionality, Lundquist number), and instability drive-versus- dissipation through Grad-Shafranov equilibria (EFIT, VMEC), gyrokinetic and MHD codes (GENE, NIMROD, XGC), PIC simulation (VPIC, OSIRIS), and...

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Generate Image · stanfish06 bundle
Generate or edit images using AI models (FLUX, Gemini). Use for general-purpose image generation including photos, illustrations, artwork, visual assets, concept art, and any image that isn't a technical diagram or schematic. For flowcharts, circuits, pathways, and technical diagrams, use the scientific-schematics skill instead.

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Ghidra Reverse · stanfish06 bundle
Use for free/open reverse engineering with Ghidra (headless or GUI), including decompile, cross-refs, and optional Ghidra MCP workflows when IDA is unavailable.

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Glycobiologist · stanfish06 bundle
Expert-thinking profile for Glycobiologist (wet-lab / structural glycobiology / glycomics & glycoproteomics): Reasons from N-/O-glycan biosynthesis, O-GlcNAc cycling (OGT/OGA), LC-MS glycomics, exoglycosidase sequencing, and lectin microarrays; uses GlyTouCan/SNFG/MIRAGE, pGlyco/GlycoWorkbench, and treats PNGase F limits, isomer collapse, and ER-stress high-mannose as first-class failure modes.

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Heliophysicist · stanfish06 bundle
Expert-thinking profile for Heliophysicist (remote sensing + in situ / MHD-plasma / space-weather forecasting / magnetosphere coupling): Reasons from MHD, magnetic topology, reconnection, and IMF Bz coupling through SDO/HMI magnetograms, DEM and NLFFF analysis, coronagraph GCS fitting, and WSA-ENLIL/EUHFORIA ensembles while treating LOS foreshortening, AIA stray light, force-free NLFFF breakdown, and Dst/SYM-H saturation as first-class failure modes.

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Horticulturist · stanfish06 bundle
Expert-thinking profile for Horticulturist (orchard/CEA trials / postharvest physiology / rootstock-scion & crop load / IPM (degree-day, MRL/PHI)): Reasons from plant-environment-cultural coupling, source-sink carbon partitioning, and chilling/photoperiod thresholds through rootstock-scion matching, DLI/VPD and substrate EC/pH targets, Dynamic/Utah chill models, and CA/MA postharvest setpoints while treating blossom-end rot, bitter pit, tipburn, storage scald...

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Hydrogeologist · stanfish06 bundle
Expert-thinking profile for Hydrogeologist (field hydraulics / aquifer testing / contaminant transport / MODFLOW modeling / remediation): Reasons from Darcy's law, mass conservation, aquifer heterogeneity, and coupled biogeochemical transport through Theis and Cooper-Jacob aquifer-test analysis, MODFLOW/MT3DMS modeling with PEST uncertainty, and low-flow geochemical sampling while treating wellbore-storage and skin artifacts, equivalent-porous-medium...

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Matlab Testing · stanfish06 bundle
Generate and run MATLAB unit tests using matlab.unittest and matlab.uitest. Parameterized tests, fixtures, mocking, coverage analysis, CI/CD with buildtool, app testing with gestures. Use when creating tests, writing test classes, running test suites, checking coverage, testing apps, or validating MATLAB code.

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Matlab Theming · stanfish06 bundle
Style MATLAB charts and figures. colororder palettes for chart series colors, colormap selection, brand color organization, and the R2025a Theme API for uifigure apps (dark mode with fliplightness, ThemeChangedFcn, uistyle, component colors). Use when customizing chart colors, applying a color palette, organizing brand colors, implementing dark mode, or importing an external color scheme. Triggers: theme, dark mode, brand colors, colororder, colormap, palette, fliplightness, color scheme, styling, chart colors.

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Mermaid Studio · stanfish06 bundle
Validate and render Mermaid diagrams to SVG, PNG, or ASCII with bundled scripts (mermaid-cli, beautiful-mermaid, Puppeteer icon packs), plus styling rules for C4 and AWS architecture-beta diagrams. Use when a .mmd file needs a syntax check, a rendered image, batch rendering, ASCII output, an AWS icon diagram, a C4 diagram, or one of the 20 bundled themes. Do not use for choosing a diagram type or writing Mermaid inside markdown docs (use markdown-mermaid-writing or diagram-generator), or for previewing in the terminal (use mermaid-terminal).

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Microbiologist · stanfish06 bundle
Expert-thinking profile for Microbiologist (wet-lab / culture, amplicon & shotgun microbiomics): Reasons from culturability limits, CFU/MPN enumeration, selective media, DADA2/QIIME2 16S ASVs (SILVA/GTDB), and shotgun metagenomics (Kraken2, MetaPhlAn, HUMAnN); treats plate-count anomaly, compositional stats pitfalls, kit contamination, and index hopping as first-class failure modes.

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Mlops Engineer · stanfish06 bundle
Expert-thinking profile for MLOps Engineer (ML lifecycle ops / feature stores & serving / drift monitoring / CI-CD-CT / registry promotion): Reasons from data contracts, feature parity, evaluation gates, and rollback-readiness through MLflow/W&B registries, Feast feature stores, KServe/Triton serving, Great Expectations/TFDV validation, and Evidently PSI/KS drift monitors while treating train-serve skew, data leakage, silent degradation, and schema/concept...

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Phage Biologist · stanfish06 bundle
Expert-thinking profile for Phage Biologist (wet-lab / phage isolation, genomics, and phage-therapy R&D): Reasons from lytic vs lysogenic cycles, PFU/MOI/Poisson kinetics, one-step growth and EOP host-range matrices, PhagesDB/Phamerator/Pharokka genomics, and CRISPR/restriction escape—treating prophage immunity, defective particles, and therapy integrase scans as first-class failure modes.

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Phylogeneticist · stanfish06 bundle
Expert-thinking profile for Phylogeneticist (computational / molecular & morphological systematics): Reasons from Hennigian homology and MSC/coalescent-aware species trees through MAFFT/trimAl alignment, IQ-TREE 3 ModelFinder and gCF/sCF/gDF discordance, ASTRAL/ASTRAL-Pro 2/BEAST2 FBD dating, bPP/BFD* delimitation, and MIAPA/TreeBASE provenance while treating LBA, mis-rooting, compositional heterogeneity, gene flow...

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Polymer Chemist · stanfish06 bundle
Expert-thinking profile for Polymer Chemist (wet-lab / synthetic polymer chemistry): Designs and interprets polymer synthesis, characterization, and structure–property relationships from mechanism (chain-growth, step-growth, RDRP, ROMP) through absolute MW verification to application-relevant thermal and rheological data.

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Process Chemist · stanfish06 bundle
Expert-thinking profile for Process Chemist (API/route development / scale-up & reaction engineering / crystallization & PAT / regulatory (ICH Q8-Q11, M7, QbD)): Reasons from mass and energy balances, impurity fate maps, and supersaturation trajectories through RC1 calorimetry, DoE in JMP/MODDE, FBRM/XRPD crystallization tracking, and ICH Q8/Q9/Q11 control strategy while treating exotherm runaway at plant jacket capacity, ICH M7 genotoxic carry-over, polymorph shifts on scale...

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Proteinmpnn Nim · stanfish06 bundle
Run ProteinMPNN inverse folding via NVIDIA NIM to design protein sequences for a target backbone. Use for ProteinMPNN, inverse folding, sequence design, backbone redesign, fixed chains/residues, omit_AAs, sampling temperature, soluble model, hosted NVIDIA API, local Docker, PDB input, and multi-FASTA output.

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Psychophysicist · stanfish06 bundle
Expert-thinking profile for Psychophysicist (laboratory / psychophysics & perception): Reasons from psychometric functions, staircase/MLE threshold procedures, signal- detection theory, and calibrated display/audio transducers while treating timing jitter, adaptation, and criterion/sensitivity conflation as first-class failure modes.

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Quantum Chemist · stanfish06 bundle
Expert-thinking profile for Quantum Chemist (computational / ab initio electronic structure theory): Reasons from the Schrödinger equation through HF, MP2/CCSD(T)/CBS, and multireference (CASSCF/CASPT2); uses ORCA/Psi4/Gaussian with GMTKN55/WTMAD-4 validation, T1/D1 diagnostics, Helgaker CBS extrapolation, and BSSE/spin-contamination checks while treating SCF near-degeneracy, intruder states, and global-vs-local...

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Query Alphafold · stanfish06
Query AlphaFold protein structure predictions. Use when user asks about protein structure, 3D structure, protein folding, or structure prediction. Triggers on "alphafold", "protein structure", "3D structure", "folding", "pLDDT", "structure prediction".

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Report Template · stanfish06 bundle
Publication-quality PDF report generation using Typst templates. Produces professional scientific reports with colored section bands, styled tables, figure captions, callout boxes, and page headers/footers.

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Research Grants · stanfish06 bundle
Write competitive research proposals for NSF, NIH, DOE, and DARPA. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.

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Research Lookup · stanfish06 bundle
Look up current research information using parallel-cli search (primary, fast web search) or the Parallel Chat API (deep research). Automatically routes queries to the best backend. Use for finding papers, gathering research data, and verifying scientific information.

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Process Engineer · stanfish06 bundle
Expert-thinking profile for Process Engineer (process design / simulation / commissioning & plant troubleshooting): Reasons from conservation laws, CSTR/PFR selectivity and RTD/Da scale-up through BFD→PFD→P&ID/HAZOP/LOPA/SIL, Aspen Plus/HYSYS HMB, API 520/521 relief and LMTD/F_t exchanger sizing, and lab→pilot→plant commissioning while treating frozen-design violations, simulation-without-data, and BPCS/IPL conflation as...

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Protein Engineer · stanfish06 bundle
Expert-thinking profile for Protein Engineer (directed evolution / display selection / biophysical characterization / ML-guided design / developability): Reasons from sequence-structure-function relationships, evolutionary constraint, and multiparameter developability through display selection, ProteinMPNN/RFdiffusion and AlphaFold modeling, SPR/BLI kinetics, and SEC/DSF/CE-SDS characterization while treating aggregation, Tm loss, proteolysis, glycoform mismatch, and...

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Protocol Reverse · stanfish06 bundle
Use for authorized reverse engineering of custom binary protocols, Protobuf/gRPC, WebSocket frames, and PCAP-driven protocol recovery.

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Radio Astronomer · stanfish06 bundle
Expert-thinking profile for Radio Astronomer (interferometry / uv-plane imaging / spectral-line & polarization / time-domain (pulsars, FRBs)): Expert profile for radio astronomer — see AGENTS.md for field-specific methods and failure modes.

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Rnacentral Skill · stanfish06 bundle
Submit compact RNAcentral API requests for RNA entry browsing, single-entry lookup, and cross-reference retrieval. Use when a user wants concise RNAcentral summaries

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Setup Zoom OAUTH · stanfish06 bundle
Use when setting up OAuth.

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Sports Scientist · stanfish06 bundle
Expert-thinking profile for Sports Scientist (applied / field & lab / team & individual performance monitoring): Reasons from periodization and session- RPE/ACWR/GPS load monitoring, VALD force-plate readiness, SWC/TE decision bands, and IOC/STROBE-SIIS/CERT/CONSORT reporting while treating pseudoreplication, Hawthorne reactivity, and single-metric injury claims as first-class failure modes.

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Struct Predictor · stanfish06 bundle
Protein structure prediction with Boltz-2. Accepts YAML inputs (single protein or multi-chain complex), runs boltz predict, extracts per-residue pLDDT and PAE confidence, and writes a markdown report with figures.

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Systems Engineer · stanfish06 bundle
Expert-thinking profile for Systems Engineer (requirements / architecture / integration / V&V / MBSE): Reasons from stakeholder needs, ISO/IEC/IEEE 15288 life- cycle processes, and V-model verification/validation through bidirectional requirements trace (DOORS/Polarion), MBSE SysML digital threads, ICD interface control, DSM integration sequencing, MCDA trade studies, and FMEA/FTA/STPA risk—while treating scope creep...

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Three Webgl Game · stanfish06 bundle
Implement browser-game runtimes with plain Three.js. Use when the user wants imperative scene control in TypeScript or Vite with GLB assets, loaders, physics, and low-level WebGL debugging.

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Traffic Engineer · stanfish06 bundle
Expert-thinking profile for Traffic Engineer (operations / safety / signal & corridor analysis): Reasons from LWR/CTM flow, HCM delay/v/c/LOS, K-D-PHF-DDHV volumes, ITE TGM 12th/MTIASD TIAs, Synchro/HCS/SIDRA/VISSIM workflows, and HSM SPF+CMF+EB safety — treating unc calibrated models, naive before–after crashes, and LOS-without-v/c as first-class failure modes.

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Academic Pipeline · stanfish06 bundle
Orchestrator for the full academic research pipeline: research -> write -> integrity check -> review -> revise -> re-review -> re-revise -> final integrity check -> finalize. Coordinates deep-research, academic-paper, and academic-paper-reviewer into a seamless 10-stage workflow with mandatory, coverage-bounded integrity checks, two-stage peer review, and auditable quality-assurance artifacts. Triggers on: academic pipeline, research to paper, full paper workflow, paper pipeline, end-to-end paper, research-to-publication, complete paper workflow, 연구부터 논문까지, 연구 주제 설정부터 논문 완성까지, 논문 전체 워크플로.

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Colloid Chemist · stanfish06 bundle
Expert-thinking profile for Colloid Chemist (wet-lab / dispersion formulation / DLS- zeta-SAXS characterization / interfacial rheology / nano & emulsion stability (ISO DLS, REACH)): Reasons from interfacial thermodynamics, DLVO and non-DLVO forces, zeta- potential, and rheology through orthogonal characterization (DLS, NTA, cryo-TEM, SAXS/SANS S(Q), pendant-drop tensiometry) and accelerated-aging stability tests while treating coalescence, Ostwald ripening, creaming, and flocculation crossing the...

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Complexa Design · stanfish06 bundle
End-to-end Proteina-Complexa design pipeline driver. Use when the user wants to "design a binder", "design binders for X", "run complexa design", "de novo binder", "PDL1 binder", "TrkA binder", "design proteins for target", "protein binder design", "ligand binder", "design a small-molecule binder", "ATP-binding protein", "AME motif scaffolding", "scaffold a motif near a ligand", "motif + ligand design", "enzyme scaffolding", "flow matching protein design", "beam-search binder", "FK steering", "MCTS protein design", or "refold with AF2 / RF3 / ESMFold", or wants success rates, interface pAE, scRMSD, or FoldSeek diversity from one command. Drives the complexa design pipeline from target picking to manifest emission and reports how many designs passed.

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Complexa Target · stanfish06 bundle
Use this skill whenever the user wants to add, register, edit, list, show, or validate a Proteina-Complexa design target for any pipeline — protein binder (default), ligand binder, or AME / enzyme scaffolding. Triggers include "add a target", "define a new target for binder design", "register a hotspot", "set up a PDL1 binder target", "ligand binder pocket", "SMILES target", "AME task", "enzyme motif", "M0024_1nzy", "complexa target add", "complexa target show", "configure target X", "what targets are available", "where do hotspots live", "what does target_input mean", "chain-spec syntax", "binder length range", or any question about `configs/targets/{,ligand_}targets_dict.yaml` and `configs/design_tasks/ame_dict_v2.yaml`. Also covers `complexa validate target`. This is the only skill that touches the three targets dict files.

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Core Actionbook · stanfish06 bundle
Internal support skill for actionbook MCP selectors used by Rust documentation research workflows. Use only when another rust-skills workflow explicitly requests actionbook-backed selectors.

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Dairy Scientist · stanfish06 bundle
Expert-thinking profile for Dairy Scientist (clinical / research): Reasons from the lactation curve, dry matter intake, and rumen health through NASEM Dairy 2021/CNCPS ration formulation, Penn State particle separation, DHIA records, and pen-level mixed models while treating subacute ruminal acidosis, milk fat depression, transition-cow hypocalcemia, and unadjusted DIM/parity...

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Ecotoxicologist · stanfish06 bundle
Expert-thinking profile for Ecotoxicologist (regulatory / laboratory & field ERA (aquatic–terrestrial)): Reasons from bioavailability (BLM/WHAM), OECD 201–222 tiered tests, and ECx/SSD HC5–PNEC derivation; compares PEC/PNEC under REACH/PPP frames while treating third-phase BCF artifacts, mixture CA departures, and mesocosm exposure mismatch as first-class failure modes.

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Endocrinologist · stanfish06 bundle
Expert-thinking profile for Endocrinologist (clinical / research): Start with the axis, not the number. Every hormone sits in a loop: hypothalamus → Keep the major axes distinct: HPA: CRH → ACTH → cortisol (and adrenal androgens). HPT: TRH → TSH → T4/T3; peripheral deiodinases and T3 receptor signaling.

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Evaluate Plugin · stanfish06 bundle
Evaluate a local Codex plugin in engineer-friendly language. Use when the user says "evaluate this plugin", "audit this plugin", "why did this score that way", "what should I fix first", "help me benchmark this plugin", or asks for a plugin-wide report before comparing versions.

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Geomorphologist · stanfish06 bundle
Expert-thinking profile for Geomorphologist (field mapping / DEM geomorphometry / cosmogenic dating / landscape evolution modeling): Reasons from coupled form, process, and time and from rates, thresholds, and lag times through field mapping, lidar/SfM DEM morphometry (chi profiles, Ksn in LSDTopoTools/Landlab), cosmogenic nuclide dating (CRONUS-Earth, OSL, U-Th), and landscape-evolution models, while treating equifinality, inheritance, DEM...

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Go Rust Reverse · stanfish06 bundle
Use for reverse engineering stripped Go and Rust binaries including runtime recognition, pclntab/moduel data recovery, panic strings, and idiomatic decompilation recovery.

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Hugging Science · stanfish06 bundle
Use when the user is doing AI/ML work in a scientific domain such as biology, chemistry, physics, astronomy, climate, genomics, materials, medicine, ecology, energy, engineering, math, drug discovery, protein design, weather modeling, theorem proving, single-cell, or PDE solving. Hugging Science is a curated catalog of scientific datasets, models, blog posts, and interactive Spaces. This skill helps discover and use resources via `datasets`, `transformers`, the HF Inference API, `gradio_client`, and methodology citations.

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Laser Physicist · stanfish06 bundle
Expert-thinking profile for Laser Physicist (laser source R&D / ultrafast & CPA / nonlinear frequency conversion / beam metrology / laser safety (ISO 11146, IEC 60825)): Expert profile for laser physicist — see AGENTS.md for field-specific methods and failure modes.

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Lit Synthesizer · stanfish06 bundle
Search PubMed and bioRxiv for bioinformatics literature, synthesise results into a structured report, and build a citation graph — all locally, with a reproducibility bundle.

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Immunogeneticist · stanfish06 bundle
Expert-thinking profile for Immunogeneticist (clinical laboratory / transplant histocompatibility / MHC population genetics): Reasons from HLA/KIR/FcγR diversity, haplotype LD, and epitope immunogenicity; adjudicates NGS typing, imputation fine- mapping, eplet/TCE matching, and DSA/crossmatch artifacts.

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Malware Analysis · stanfish06 bundle
Use when analyzing suspected malware through static, dynamic, and behavioral techniques, including IOC extraction, YARA or Sigma rules, sandboxing, and anti-analysis behavior.

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Marine Biologist · stanfish06 bundle
Expert-thinking profile for Marine Biologist (field / shipboard / biological oceanography / eDNA & observing systems): Reasons from water-mass stratification, CTD–Niskin and CalCOFI-style net tows, BRUV, and MiFish/COI eDNA through OBIS/WoRMS/GBIF and ARGO/BGC-Argo; treats mesopelagic DVM, hypoxia/Ω_aragonite constraints, fluorometer quenching, BRUV MaxN bias, and transect pseudoreplication as first-class failure modes.

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Marine Geologist · stanfish06 bundle
Expert-thinking profile for Marine Geologist (ship/AUV survey / seismic + multibeam / IODP coring + stratigraphy / marine geohazards + seafloor resources): Reasons from stratigraphy, sedimentary processes, geophysical facies, and age control through multibeam bathymetry, 2D/3D seismic, piston/IODP cores tied via synthetic seismograms, and CSF-A age models while treating bad-SVP false scarps, BSRs mimicking free gas, gas-charged push-down faking structural offset, and...

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Matlab Build App · stanfish06 bundle
Build MATLAB apps from requirements to working code. Asks discovery questions (or skips them when the path is known), recommends UIFigure or UIHTML path, identifies layout archetype (Dashboard, Explorer, Tabbed, Wizard, Canvas), produces an implementation plan, and executes the build. Use when a user wants to build a MATLAB app, create a GUI, make an interactive tool, build a uifigure app, build a uihtml app, or asks which approach to use. Also use when user describes spatial layout needs: dashboard, control panel, sidebar, tabs, wizard, stepper, canvas, workspace.

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Matlab Debugging · stanfish06 bundle
Diagnose MATLAB errors and unexpected behavior. Breakpoints, workspace inspection, try-catch diagnostics, and common error patterns. Use when debugging functions, tracing errors, inspecting variables, or diagnosing runtime failures.

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Mermaid Terminal · stanfish06 bundle
Render Mermaid source locally and preview it in Ghostty, Kitty, or another Kitty-graphics-compatible terminal. Use when a user wants to see a Mermaid diagram without opening a browser; do not use for general image viewing or non-Mermaid diagrams.

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Mining Geologist · stanfish06 bundle
Expert-thinking profile for Mining Geologist (field / exploration drilling / ore deposit modelling / geostatistics / resource estimation): Reasons from deposit-type models (porphyry, VMS, SEDEX, orogenic Au, IOCG, skarn) through oriented core logging, domaining, variography, OK/MIK/LUC estimation, and Chain-of-Mining reconciliation to JORC Table 1, NI 43-101 Item 14, and CIM MRMR reporting; uses Leapfrog, GIM Suite/MX Deposit, and Parker F-series factors...

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Morning Briefing · stanfish06 bundle
Generates a morning briefing that triages your inbox and previews your day using the Superhuman Mail MCP server — acting as an AI chief of staff. Use this skill whenever someone asks to "brief me on my day", "triage my inbox", "what's important in my email", "summarize my unread emails", "what do I need to deal with today", "chief of staff briefing", "morning update", "inbox summary", "what emails need my attention", "clear my inbox", or any variation of wanting a prioritized view of their email and calendar before they start working. Also trigger when someone says "I just woke up, what's going on" or "catch me up on my inbox". if someone wants to understand the state of their inbox or day at a glance,

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Conda Bioconda · stanfish06
Reproducible Conda/Mamba/micromamba environment management for bioinformatics, with correct Bioconda channel setup, environment files, version pinning, and lockfiles. Use when installing bioinformatics tools (samtools, bwa, GATK, STAR, etc.), creating or sharing reproducible environments, resolving "PackagesNotFound"/slow-solver issues, or when a project has an environment.yml. For pure-Python projects without compiled bio tools, prefer uv (see modern-python).

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Crop Scientist · stanfish06 bundle
Expert-thinking profile for Crop Scientist (field trials / agronomy / crop physiology / G×E×M / MET stability analysis): Reasons from genotype-by-environment-by-management interaction, yield-component partitioning, and phenology-gated critical periods through MET stability analysis (AMMI, Finlay-Wilkinson, GGE biplots), mixed models (ASReml-R, lme4), N-response curves (quadratic-plateau, MRTN), and crop models (APSIM, DSSAT) while...

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Cuequivariance · stanfish06
Define custom groups (Irrep subclasses), build segmented tensor products with CG coefficients, create equivariant polynomials and IrDictPolynomials, and use built-in descriptors (linear, tensor products, spherical harmonics). Use when working with cuequivariance group theory, irreps, or segmented polynomials.

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Cytogeneticist · stanfish06 bundle
Expert-thinking profile for Cytogeneticist (clinical / research): Reasons from chromosome architecture, copy-number state, banding resolution, and cell-line/clonal context through karyotype, FISH, chromosomal microarray, optical genome mapping, ISCN, and ACMG/ClinGen dosage standards while treating confined placental mosaicism, maternal cell contamination, pseudomosaicism, and...

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Dagster Expert · stanfish06 bundle
Expert guidance for working with Dagster and the dg CLI. Use before doing any task that requires knowledge specific to Dagster, or that references assets, materialization, components, data tools or data pipelines. Common tasks may include creating a new project, adding new definitions, understanding the current project structure, answering general questions about the codebase (finding asset, schedule, sensor, component or job definitions), debugging issues, or providing deep information about a specific Dagster concept.

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Photochemist · stanfish06 bundle
Expert-thinking profile for Photochemist (photophysics / excited-state spectroscopy / actinometry / time-resolved (TCSPC, flash photolysis) / photoredox & solar chemistry): Reasons from Jablonski diagrams, quantum yields, and excited-state potential energy surfaces through ferrioxalate actinometry, TCSPC and transient-absorption flash photolysis, Stern–Volmer quenching, and TDDFT/CASPT2 calculations while treating inner-filter distortion, oxygen-sensitive triplet pathways...

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PPTX Posters · stanfish06 bundle
Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern web-based poster design with responsive layouts and easy visual integration.

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Pufferlib V2 · stanfish06
PufferLib 2.x reinforcement learning workflows for the Dec 2024 API generation. Use when working with pufferlib>=2.0,<3.0, Puffer Ocean C environments, native PufferEnv/VecEnv-style vectorization, Gymnasium/PettingZoo compatibility wrappers, asynchronous sampling, or v2 training/evaluation migration from the deprecated v1 PuffeRL top-level API.

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Pufferlib V3 · stanfish06
PufferLib 3.x reinforcement learning workflows for the Jun 2025 API generation. Use when working with pufferlib>=3.0,<4.0, the puffer CLI, pufferlib.pufferl training helpers, Ocean environments, PPO/PufferRL training, distributed torchrun runs, custom policies, vectorization, Gymnasium/PettingZoo wrappers, or migration from deprecated v1/v2 PufferLib code.

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Radiochemist · stanfish06 bundle
Expert-thinking profile for Radiochemist (tracer synthesis / radiopharmaceutical QC / cyclotron-generator production / dosimetry / GMP release (USP <823>, FDA 21 CFR 212)): Reasons from radionuclide half-life, specific activity, radiochemical purity, and dosimetry through analytical/prep HPLC with radiodetector, iTLC, HPGe γ-spectroscopy, OLINDA/MIRD, and USP <823>/EANM release specs while treating defluorination, transchelation of ⁶⁸Ga/⁸⁹Zr, ⁹⁹ᵐTc colloid and ⁶⁸Ge breakthrough as...

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Rust Learner · stanfish06 bundle
Use when asking about Rust versions or crate info. Keywords: latest version, what's new, changelog, Rust 1.x, Rust release, stable, nightly, crate info, crates.io, lib.rs, docs.rs, API documentation, crate features, dependencies, which crate, what version, Rust edition, edition 2021, edition 2024, cargo add, cargo update, 最新版本, 版本号, 稳定版, 最新, 哪个版本, crate 信息, 文档, 依赖, Rust 版本, 新特性, 有什么特性

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Scikit Image · stanfish06
A collection of algorithms for image processing in Python. Built on NumPy, SciPy, and Cython. It focuses on scientific image analysis including segmentation, geometric transformations, color space manipulation, analysis, and filtering.

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Scikit Learn · stanfish06 bundle
Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building ML pipelines. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.

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Wandb Primary · stanfish06 bundle
Primary W&B skill for broad or mixed Weights & Biases work: project overviews, W&B runs and artifacts, Weave traces and evaluations, Reports, and Launch workflows. Use when the task spans multiple W&B surfaces or the user asks generally what is happening in a W&B project.

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Zz Prefix · stanfish06 bundle
Synthetic positive control for the eval harness. Not a real skill.

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Aerodynamicist · stanfish06 bundle
Expert-thinking profile for Aerodynamicist (wind tunnel / CFD / flight vehicle external aerodynamics): Reasons from circulation, Cp distributions, and boundary-layer physics through Re/Mach similitude, NACA airfoil polars, stall classification, wind- tunnel blockage/wall corrections, and SA/SST/LES external-aero CFD—not generic mechanical engineering.

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Astrobiologist · stanfish06 bundle
Expert-thinking profile for Astrobiologist (planetary science / field analogs / mission astrobiology / origins): Reasons from habitability, redox disequilibrium, and Bayesian biosignature frameworks through Mars (Perseverance, Viking perchlorate lessons), Europa Clipper ocean worlds, agnostic signatures and the Ladder of Life Detection, while treating abiotic mimics, preservation, and LUCA phylogenomics as constraints—not...

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Astrophysicist · stanfish06 bundle
Expert-thinking profile for Astrophysicist (observational / computational / multi- messenger): Reasons like a senior astrophysicist across observational, computational, and multi-messenger work — from radiative transfer and error budgets through JWST/ALMA/Rubin/LIGO pipelines, VO archives, and calibrated detection vs upper-limit reporting.

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AWS Agentic AI · stanfish06 bundle
AWS Bedrock AgentCore comprehensive expert for deploying and managing AI agents at scale. Use when working with any AgentCore service including Gateway, Runtime, Memory, Identity, Code Interpreter, Browser, Observability, Agent Registry, or Evaluations. Covers agent deployment, MCP tool integration, credential management, agent discovery, governance workflows, and automated quality assessment. Essential when user mentions AgentCore, agent runtime, agent registry, agent evaluation, MCP gateway, deploy agent, register MCP server, discover agents, evaluate agent quality, agent credentials, or wants to build, deploy, catalog, or monitor AI agents on AWS.

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Bacteriologist · stanfish06 bundle
Expert-thinking profile for Bacteriologist (wet-lab / clinical & environmental microbiology): Reasons from bacterial growth physiology, selective culture, Gram stain, MALDI-TOF and 16S/WGS identification, EUCAST/CLSI AST, BSL containment, contamination and VBNC, using BacDive and BV-BRC for strain metadata and pathogen genomics.

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Build Zoom Bot · stanfish06 bundle
Use when building bots.

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Busco Assessor · stanfish06 bundle
Genome, transcriptome, and protein completeness assessment via BUSCO v6. Agentic lineage routing from organism description, all three BUSCO modes, auto-lineage support, and full demo mode without the BUSCO binary.

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Cell Biologist · stanfish06 bundle
Expert-thinking profile for Cell Biologist (wet-lab / mammalian cell culture / fluorescence microscopy / genetic perturbation / rigor (STR, MIQE, REMBI)): Reasons from compartment thermodynamics, membrane electrophysics, and necessity-plus- sufficiency logic through STR authentication, confocal/TIRF imaging, CRISPR and siRNA perturbation with rescue, and Western blot, treating mycoplasma, passage and serum-lot drift, edge effects, antibody cross-reactivity, siRNA seed...

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Cell Detection · stanfish06 bundle
Cell segmentation in fluorescence microscopy images. Supports Cellpose/cpsam (Cellpose 4.0) with additional backends planned. Produces segmentation masks, per-cell morphology metrics (area, diameter, centroid, eccentricity), overlay figures, and a report.md.

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Civil Engineer · stanfish06 bundle
Expert-thinking profile for Civil Engineer (structural / geotechnical / water resources / LRFD design-review / codes (ASCE 7, ACI 318, AASHTO LRFD)): Reasons from load paths, factored load combinations, soil-structure interaction, and governing limit states through ASCE 7, ACI 318, AISC 360, and tools like SAP2000/ETABS, PLAXIS, and HEC-RAS while treating missing load paths, connection and foundation failures, differential settlement, and unvalidated FEA as...

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Complexa Setup · stanfish06 bundle
First-time setup, environment configuration, and model-weight installation for Proteina-Complexa. Reach for this skill whenever the user says "set up complexa", "install complexa", "configure my environment file", "first-time setup", "what models do I have installed", "what's in my environment file", "download model weights", "download Complexa / AF2 / RF3 / ProteinMPNN / LigandMPNN / ESM2 / ESMFold checkpoints", "preflight my GPU", "verify environment", "complexa init", "complexa download", "complexa download --status", "complexa validate env", or any time a fresh checkout needs to be made runnable. This is the first skill to run on a new clone — it drives `complexa init`, `complexa download`, and `complexa validate env` end-to-end, edits the required `.env` keys, picks the right runtime (UV vs Docker), and emits a replayable setup artifact.

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Complexa Slurm · stanfish06 bundle
Use when launching Proteina-Complexa jobs on a remote SLURM cluster, including binder search, LaProteina design or training, multi-node runs, sbatch, remote GPU jobs, Hydra sweeps, rsync-to-cluster workflows, `--on-cluster`, grizzly or polar, and singleton requeue chains.

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Complexa Sweep · stanfish06 bundle
Use this skill whenever the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans, Pareto search over generation/reward/evaluation knobs, or any "compare configurations" workflow. Trigger phrases include "sweep beam width", "sweep nsteps", "hyperparameter sweep", "parameter scan", "scan beam_width and temperature", "compare configurations", "find the best generation params", "what's the optimal nsteps", "Pareto search for binder quality vs wall-clock", "complexa sweep", "tune Complexa", "ablate the reward weights", "configs/sweeps", "--sweeper", "run beam_width.yaml". This is the only skill that owns sweeper YAML authoring, cartesian-product expansion, and per-config result ranking.

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Hepatologist · stanfish06 bundle
Expert-thinking profile for Hepatologist (clinical / research): Reasons from hepatic injury pattern (R-value), synthetic function, and portal hypertension through Child- Pugh/MELD 3.0, FIB-4 and elastography, LI-RADS/BCLC staging, SAAG paracentesis, and Baveno VII criteria while treating DILI misattribution, elastography false positives in cholestasis, hypersplenic...

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Heygen Video · stanfish06 bundle
Use when generating a HeyGen presenter video, personalized video message, talking-head explainer, tutorial, product demo, video pitch, or avatar-led update. Also use when the user says “make a video of me saying...” or provides an avatar identity. If the request also asks to create an avatar, use the avatar skill first. Do not use for avatar setup, translation, TTS-only tasks, cinematic footage without a presenter, or streaming avatars.

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Immunologist · stanfish06 bundle
Expert-thinking profile for Immunologist (wet-lab / translational immunology): Reasons from innate/adaptive immunity and MHC presentation; designs flow cytometry (FMO, gating, exhaustion panels), ICS, ELISpot (DFR), tetramer, and multiplex cytokine assays; validates epitopes via IEDB/NetMHCpan; reports per MIATA and MIFlowCyt.

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1088 published skills · page 8 of 11