stanfish06

@stanfish06 source repo

1.1k skills
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Mems Engineer · stanfish06 bundle
Expert-thinking profile for MEMS Engineer (silicon micromachining / transducer design / simulation & WLT): Reasons from scale-dependent mechanics, squeeze-film damping, and electrostatic pull-in through DRIE Bosch/surface micromachining, CoventorMP/COMSOL, foundry PDKs, LDV/WLI metrology, and AEC-Q103 qual while treating release stiction, DRIE scallop bias, package-stress offset drift, and functional-WLT-vs-reliability...

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Meteorologist · stanfish06 bundle
Expert-thinking profile for Meteorologist (operational / research atmospheric forecasting): Reasons from hydrostatic and geostrophic balance, scale-dependent dynamics, and the obs-to-NWP pipeline; works the Snellman funnel, matches HRRR/GFS/ECMWF to scale, and treats spin-up, convective scheme bias, radar AP, and PoP misinterpretation as first-class failure modes.

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Nanophysicist · stanfish06 bundle
Expert-thinking profile for Nanophysicist (experimental / low-T transport / SPM / electron spectroscopy): Reasons from quantum confinement dimensionality, Coulomb diamonds and SET conditions, Kondo vs Luttinger-liquid power laws, and lock-in cryostat transport through STM/STS, AFM/KPFM, and STEM/EELS while treating charging artifacts, tip convolution, contact resistance, and beam-damage plasmon shifts as first-class...

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Nature Reader · stanfish06 bundle
Build full-paper Chinese-English side-by-side, figure/table-aware, source-grounded Markdown readers for journal or conference papers from PDF, DOI, arXiv, publisher HTML, or pasted text. Use whenever the user asks to translate or read a paper, make 中英文对照/原文对照/全文翻译解读, extract figures or tables into the right positions, preserve figure/table placement near relevant prose, or keep exact source anchors for every block. This skill must not degrade into a summary-only output unless the user explicitly asks for a summary. Also trigger on general paper-reading and translation requests even without the word "Nature", such as reading/translating an academic paper, literature reading, understanding a paper, and Chinese phrasings like 读论文、精读论文、论文翻译、文献翻译、文献阅读、学术阅读、帮我读这篇文章、翻译这篇paper.

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Gpt Taste · stanfish06
Elite UX/UI & Advanced GSAP Motion Engineer. Enforces Python-driven true randomization for layout variance, strict AIDA page structure, wide editorial typography (bans 6-line wraps), gapless bento grids, strict GSAP ScrollTriggers (pinning, stacking, scrubbing), inline micro-images, and massive section spacing.

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Harmonypy · stanfish06
Harmony batch correction for single-cell data in scanpy workflows, with scvi-tools as the heavier alternative. Use when integrating scRNA-seq or single-cell multi-sample embeddings across batches, donors, chemistries, or experiments using harmonypy or Scanpy's Harmony integration.

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Langgraph · stanfish06
LangGraph is a low-level orchestration framework for building stateful LLM agents and workflows as explicit graphs — typed state with reducers, nodes/edges/conditional routing, checkpointer-backed persistence and thread memory, human-in-the-loop interrupts, and streaming. Use when building an agent or multi-step LLM workflow that needs explicit control flow (branching, loops, parallel fan-out), durable/resumable execution, approval gates, or multi-agent handoffs — or when debugging StateGraph, checkpointer, interrupt, or create_react_agent-deprecation issues. Targets LangGraph 1.x.

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Liteparse · stanfish06 bundle
Local document and PDF parsing with spatial text and bounding boxes. Use for extracting text from PDFs, DOCX, Office files, and images; OCR on scans; layout-preserved JSON for RAG; batch-ingesting paper folders; or page screenshots for multimodal agents — even when the user does not name liteparse. Prefer over MarkItDown when you need bboxes, fast local parsing, or PNG page renders; prefer over the pdf skill for merge/split/forms.

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Morph Ppt · stanfish06 bundle
Use this skill when the user wants a .pptx with smooth cross-slide animation — PowerPoint Morph transitions, Keynote-style continuous motion, shapes that grow / move / rotate as the slide advances. Trigger on: 'morph', 'morph transition', 'smooth transition', 'continuous animation across slides', 'Keynote-style transition', 'animated slide sequence', 'shape continuity across slides'. Output is a single .pptx. This skill is a scene layer on top of officecli-pptx — inherits every pptx v2 rule (visual floor, grid, palettes, connector canon, Delivery Gate 1–5a). DO NOT invoke for a generic deck, pitch deck, or board review without cross-slide motion — route those to officecli-pptx base or officecli-pitch-deck.

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Bioservices · stanfish06 bundle
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.

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Browser Use · stanfish06 bundle
Direct browser control via CDP for web interaction: automation, scraping, testing, screenshots, and site/app work.

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Case Review · stanfish06 bundle
Reviews a reverse-skill case package for scope readiness, Evidence to Finding to Path traceability, work item coverage, timeline references, and optional artifact hash integrity before report handoff.

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Chebi Skill · stanfish06 bundle
Submit compact ChEBI 2.0 API requests for chemical search, compound lookup, ontology traversal, and structure metadata. Use when a user wants concise ChEBI summaries

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Cosmologist · stanfish06 bundle
Expert-thinking profile for Cosmologist (theoretical / observational / computational cosmology): Reasons from Friedmann/ΛCDM, r_s and transfer functions, and multi-probe inference (Planck CMB, DESI BAO, lensing, Pantheon+ SNe) through CAMB/CLASS, Cobaya, and GetDist while treating photo-z–IA coupling, CMB foreground pipelines, H0/S8 tensions, and emulator extrapolation as first-class failure modes.

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Fix Finding · stanfish06 bundle
Use when the user explicitly asks to fix and verify a validated or plausible security finding. Do not use as the primary trigger for full PR, commit, branch, patch, or repository scans.

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Game Studio · stanfish06 bundle
Route early browser-game work. Use when the user needs stack selection and workflow planning across design, implementation, assets, and playtesting before moving to a specialist skill.

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Gwas Lookup · stanfish06 bundle
Federated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ), GTEx, eQTL Catalogue, and more.

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Histologist · stanfish06 bundle
Expert-thinking profile for Histologist (wet-lab / clinical & research histology): Reasons from fixation-through-stain pre-analytical chain (NBF, grossing, processing, embedding orientation, microtomy); validates H&E pH/QC, CAP IHC (90% concordance, predictive scoring systems), RNAscope controls, WSI (60-case validation), and treats floaters, autolysis, crush, ice-crystal, and decalcification...

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Biogeochemist · stanfish06 bundle
Expert-thinking profile for Biogeochemist (field / lab / soil-sediment biogeochemistry / process modeling): Reasons from coupled C/N/P/S redox cycles through TEAP zonation, porewater Rhizon-peeper sampling, δ13C/δ15N/δ34S tracers, chamber and eddy-covariance fluxes, and Century/DayCent SOM modeling while treating porewater O2 contamination and nitrification-denitrification coupling errors as first-class failure modes.

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Biogeographer · stanfish06 bundle
Expert-thinking profile for Biogeographer (field / GIS / phylogenetics / spatial modeling): Reasons from Wallace's ecological vs historical split through GBIF occurrence curation, blockCV spatial cross-validation, MaxEnt/biomod2 SDMs with MESS extrapolation flags, BioGeoBEARS vicariance/dispersal tests, and phylogeographic coalescence while treating random-CV AUC inflation, background bias, and...

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Brainstorming · stanfish06 bundle
Use before creative work - creating features, building components, adding functionality, or modifying behavior. Explores user intent, requirements and design before implementation.

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Caveman Stats · stanfish06 bundle
Show real token usage and estimated savings for the current session, read from the session log. Trigger: /caveman-stats.

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Climatologist · stanfish06 bundle
Expert-thinking profile for Climatologist (computational / observational climatology & paleoclimate reconstruction): Characterizes climate via WMO CLINO baselines (1991–2020 vs 1961–1990), ETCCDI indices, and teleconnection modes; bridges ERA5 climatology to CMIP6/ScenarioMIP SSP deltas (xsdba/QDM), optimal-fingerprint attribution, AR6 ERF/ECS/TCR, and proxy reconstructions (CPS/EIV, PAGES2k, MXD divergence)—distinct from weather...

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Cryptographer · stanfish06 bundle
Expert-thinking profile for Cryptographer (theoretical / applied / implementation & standards cryptography): Reasons from IND-CCA/EUF-CMA games and tight reductions through AES-GCM/RSA-OAEP/ECDSA, ML-KEM/ML-DSA (FIPS 203/204), ProVerif/Tamarin/EasyCrypt, dudect constant-time, CAVP/ACVP and FIPS 140-3 CMVP—not pure number theory or vuln fuzzing.

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Data Engineer · stanfish06 bundle
Expert-thinking profile for Data Engineer (computational / batch & streaming data platforms): Reasons from idempotent ELT, medallion bronze/silver/gold, Kimball grain and SCD2, CDC/Debezium and watermark incremental loads, dbt/GX quality gates, Airflow/Dagster orchestration, Iceberg/Delta lakehouse MERGE, data contracts and freshness SLIs while treating silent join drops, duplicate amplification, schema drift...

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Deep Research · stanfish06 bundle
Universal deep research agent team. 13-agent pipeline for rigorous academic research on any topic. 8 modes: full research, quick brief, paper review, lit-review, fact-check, three-way literature scan, Socratic guided research dialogue, and systematic review with optional meta-analysis. Covers research question formulation, Socratic mentoring, methodology design, systematic literature search, source verification, cross-source synthesis, risk of bias assessment, meta-analysis, APA 7.0 report compilation, editorial review, devil's advocate challenges, ethics review, and post-research literature monitoring. Triggers on: research, deep research, literature review, systematic review, meta-analysis, PRISMA, evidence synthesis, fact-check, WHY HOW WHAT papers, 3W literature scan, guide my research, help me think through, 研究, 深度研究, 文獻回顧, 文獻探討, 系統性回顧, 後設分析, 事實查核, 三段式文獻掃描, 引導我的研究, 幫我釐清, 幫我想想, 我不確定要研究什麼, 研究方向, 研究主題, 심층 연구, 문헌 조사, 체계적 문헌고찰, 메타분석, 사실 확인, 연구 방향을 잡아줘, 연구 주제 정하는 것을 도와줘.

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Officecli · stanfish06
Create, analyze, proofread, and modify Office documents (.docx, .xlsx, .pptx) using the officecli CLI tool. Use when the user wants to create, inspect, check formatting, find issues, add charts, or modify Office documents.

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Pennylane · stanfish06 bundle
Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google/Rigetti/IonQ. Best for variational algorithms (VQE, QAOA), quantum neural networks, and integration with PyTorch or JAX. For hardware-specific optimizations use qiskit (IBM) or cirq (Google); for open quantum systems use qutip.

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Pwn Chain · stanfish06 bundle
从逆向走到可用利用 (Working Exploit) 的全链路工程化方法。适用场景：拿到了二进制 + 漏洞点 + 目标环境，需要写出一个能稳定打通的 exploit（不是只能本地复现一下、远程一打就崩的脚本）。覆盖三大方向：栈溢出 / 堆利用 / 内核 pwn。强调"CTF 本地通 → 真实远程稳定打通"的工程差距：libc 版本错配、堆喷射时序、SMEP/SMAP/KASLR、栈对齐、远程缓冲。核心工具链：pwntools + GEF/pwndbg + ROPgadget/Ropper + one_gadget + libc-database + qemu-system 内核调试。触发关键词：pwn、栈溢出、堆溢出、ROP、ret2libc、ret2csu、one_gadget、libc-database、堆利用、tcache、fastbin、unsorted bin、kernel pwn、kROP、SMEP、SMAP、KASLR、modprobe_path、pwntools、GEF、pwndbg。

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Query Geo · stanfish06
Query NCBI GEO for gene expression datasets. Use when user asks about RNA-seq datasets, microarray data, expression data, GEO accessions, or finding public datasets. Triggers on "geo", "gene expression omnibus", "expression dataset", "RNA-seq dataset", "microarray dataset", "GSE", "GDS".

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Run Tests · stanfish06
Recommend or run the exact `dotnet test` command. Use when the user asks to run, filter, or troubleshoot .NET tests or wants the precise command, flags, or argument order — the right syntax depends on the test platform (VSTest vs Microsoft.Testing.Platform) and SDK version and is easy to get wrong from memory. USE FOR: running all tests or a subset (a specific class, category, or trait) via filters; a single framework in a multi-TFM project (`--framework`); TRX reports; crash or hang dumps; whether MTP args need the `--` separator (SDK 8/9) or pass directly (SDK 10+); diagnosing why `dotnet test` fails or uses wrong argument syntax. Detects the platform (VSTest vs MTP) and framework (MSTest/xUnit/NUnit/TUnit), then picks the matching command and filter flag (--filter, --filter-class, --filter-trait, --filter-query, --treenode-filter). DO NOT USE FOR: writing test code (use code-testing-agent), iterating on failing tests without rebuilding (use mtp-hot-reload), CI/CD config, or debugging test logic.

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Streamlit · stanfish06
Building data apps and dashboards in Python with Streamlit — the top-to-bottom rerun model, st.session_state, caching with st.cache_data/st.cache_resource, forms and st.fragment to limit reruns, multipage apps via st.Page/st.navigation, chat UIs (st.chat_message/st.chat_input), dataframe/plot display, and deployment with streamlit run. Use when building an interactive dashboard, internal data tool, model demo, or chat frontend in pure Python, or when debugging unexpected reruns, lost widget state, or slow Streamlit apps.

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Terraform · stanfish06
Terraform and OpenTofu infrastructure-as-code (IaC) — declare cloud/SaaS resources in HCL, manage state with remote backends and locking, author and consume modules, and run the init/plan/apply/destroy lifecycle. Use whenever the user mentions Terraform, OpenTofu, the tofu CLI, IaC, "infrastructure as code", provisioning cloud resources, .tf/HCL files, tfstate/backends, providers, modules, workspaces, drift, or importing existing infrastructure. For AWS-only IaC written in a general-purpose language (TypeScript/Python) via CloudFormation, prefer aws-cdk-development instead.

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Tiledbvcf · stanfish06
Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, parallel queries, and export capabilities for population genomics.

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Torchdrug · stanfish06 bundle
PyTorch-native graph neural networks for molecules and proteins. Use when building custom GNN architectures for drug discovery, protein modeling, or knowledge graph reasoning. Best for custom model development, protein property prediction, retrosynthesis. For pre-trained models and diverse featurizers use deepchem; for benchmark datasets use pytdc.

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Hunk Review · stanfish06
Interacts with live Hunk diff review sessions via CLI. Inspects review focus, navigates files, hunks, and exact lines, reloads session contents, adds inline review comments, and paints attention marks on character ranges. Use when the user has a Hunk session running or wants to review diffs interactively.

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Hydrologist · stanfish06 bundle
Expert-thinking profile for Hydrologist (rainfall-runoff modeling / flood forecasting / watershed hydrology / cold-regions & ecohydrology / uncertainty quantification): Reasons from hydrologic-cycle closure (P = ET + Q + ΔS + I), runoff-generation mechanisms, and channel routing through HEC-HMS, HEC-RAS, the National Water Model, and split-sample KGE/NSE/PBIAS calibration, while treating post-flood rating-curve shifts, radar QPE bias, snow/rain misclassification, and non-stationarity...

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Ida Reverse · stanfish06 bundle
IDA Pro 逆向分析辅助技能。当用户提到逆向、反编译、分析二进制/PE/ELF/APK/DLL/SO、破解、找密码、漏洞分析、病毒分析、firmware 固件分析，或需要分析 exe/dll/so/elf/macho/sys 等文件时，务必使用此技能。 Ensure to use this skill when the user wants to analyze any binary file, regardless of whether they explicitly mention "IDA" or "reverse engineering". This includes requests like "看看这个exe", "分析这个dll", "帮我破解", "找一下密码", "这个软件怎么注册", etc. Use the bundled scripts (scripts/start.ps1, scripts/open.ps1) for deterministic server management and file opening — do NOT write ad-hoc PowerShell commands for these operations.

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Limnologist · stanfish06 bundle
Expert-thinking profile for Limnologist (field / observational / physical limnology / lake ecology / paleolimnology): Reasons from stratification, Schmidt stability, and nutrient–light coupling; profiles with CTD/EXO and Carlson TSI components; models with rLakeAnalyzer and GLM while treating internal P loading, sensor fouling, and spatial pseudoreplication as first-class failure modes.

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Mammalogist · stanfish06 bundle
Expert-thinking profile for Mammalogist (field / observational / museum systematics / telemetry): Reasons from mammalian life history and detectability-limited sampling through ASM MDD taxonomy, Sherman/camera-trap/SCR survey design, occupancy and SECR models, bat acoustic validation, and museum voucher discipline while treating trap heterogeneity, camera autocorrelation, closure violation, and WNS decontamination...

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Mixpanelyst · stanfish06 bundle
Use when the user asks about Mixpanel product analytics, event data, funnel analysis, retention curves, cohort analysis, segmentation queries, user behavior, conversion rates, churn, DAU/MAU, ARPU, revenue metrics, feature adoption, A/B test results, user paths, flow analysis, or any request to query, explore, visualize, or analyze Mixpanel data using Python. Also use when the user asks to read, write, or manage Mixpanel "business context" — the markdown documentation that grounds AI assistants in an organization's structure and goals.

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Neurologist · stanfish06 bundle
Expert-thinking profile for Neurologist (clinical / research): Reasons from anatomic localization, time course, and phenomenology through NIHSS/ASPECTS stroke triage, ILAE 2025 seizure classification, McDonald 2017 and AQP4/MOG cell-based assays, EEG and EMG/NCS, and SNOOP4 red flags, while treating CT-negative early ischemia, ~50%-sensitive routine EEG, MS-versus-NMOSD/MOGAD...

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Paper 2 Web · stanfish06 bundle
Use when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing print-ready posters from LaTeX or PDF sources.

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Pathologist · stanfish06 bundle
Expert-thinking profile for Pathologist (clinical / research): Reasons from H&E morphology, pretest-probability differentials, and pre-analytic integrity through CAP synoptic protocols, staged IHC and FISH panels, WHO/AJCC grading and staging, and Bethesda/Paris/Milan cytology systems while treating crush artifact, fixation/decalcification failure, single-frozen-section overcall...

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Peer Review · stanfish06 bundle
Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.

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Petrologist · stanfish06 bundle
Expert-thinking profile for Petrologist (igneous/metamorphic petrology / petrography / EPMA-LA-ICP-MS microanalysis / thermodynamic modeling (Perple_X, THERMOCALC, MELTS)...): Reasons from Gibbs free energy minimization, the phase rule, and protolith-specific facies assemblages through petrography, EPMA/LA-ICP-MS microanalysis, pseudosections (Perple_X, THERMOCALC, MELTS), and classical thermobarometry while treating retrograde overprinting, serpentinization, propylitic alteration mimicking...

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Phoenix CLI · stanfish06 bundle
Debug LLM applications using the Phoenix CLI. Fetch traces, analyze errors, structure trace review with open coding and axial coding, inspect datasets, review experiments, query annotation configs, and use the GraphQL API. Use whenever the user is analyzing traces or spans, investigating LLM/agent failures, deciding what to do after instrumenting an app, building failure taxonomies, choosing what evals to write, or asking "what's going wrong", "what kinds of mistakes", or "where do I focus" — even without naming a technique.

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Dermatologist · stanfish06 bundle
Expert-thinking profile for Dermatologist (clinical / research): Clinical-research dermatologist: layered skin anatomy, inflammatory dermatoses and trial endpoints, dermoscopy vs clinical ABCDE, biopsy/pathology, patch testing, telederm, AAD guidelines, and topical steroid potency.

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Docker Expert · stanfish06
You are an advanced Docker containerization expert with comprehensive, practical knowledge of container optimization, security hardening, multi-stage builds, orchestration patterns, and production deployment strategies based on current industry best practices.

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Edr Bypass Re · stanfish06 bundle
逆向防御方实现 → 红队针对性绕过。把 EDR / Defender / AV 的 hook 表、ETW provider、AMSI 实现先逆向出来，再写针对性的 unhook / 间接 syscall / ETW patch / call stack spoof。对照 MITRE ATT&CK T1562 防御规避。触发关键词：EDR 绕过、AV bypass、免杀、unhook、direct syscall、indirect syscall、Hell's Gate、Halo's Gate、 Tartarus Gate、ETW patch、AMSI patch、call stack spoofing、hardware breakpoint Blindside、MITRE T1562、 ntdll unhook、kernel callback、CrowdStrike 绕过、Defender 绕过、Sentinel One 绕过、Elastic Defend、 Sysmon 规避、PPID spoof、Sleep mask、Process Hollowing、Reflective DLL。

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Epigeneticist · stanfish06 bundle
Expert-thinking profile for Epigeneticist (epigenomic assays / ChIP-CUT&RUN-ATAC / bisulfite methylation (EWAS) / 3D genome (Hi-C) / epigenome editing (dCas9)): Reasons from chromatin state, DNA methylation, histone marks, accessibility, and 3D genome topology through ChIP/CUT&RUN, ATAC-seq, WGBS/EM-seq, Hi-C, and dCas9-DNMT3A/KRAB perturbation while treating cell-composition shifts, batch confounding, antibody nonspecificity, Tn5 bias, and incomplete bisulfite conversion as...

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Figma Swiftui · stanfish06 bundle
SwiftUI ↔ Figma translation. Use whenever the user mentions Swift, SwiftUI, iOS, iPhone, or iPad — in EITHER direction — translating a Figma design into SwiftUI (design → code), or pushing SwiftUI views / screens / tokens back into a Figma file (code → design). Triggers on phrases like 'implement this Figma design in SwiftUI', 'build this screen in Swift', 'push this SwiftUI view to Figma', 'mirror my Swift code in a Figma file', or whenever a Figma URL appears alongside `.swift` files / an `.xcodeproj`. Routes to a direction-specific reference doc; loads alongside `figma-use` for the code → design path.

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Food Engineer · stanfish06 bundle
Expert-thinking profile for Food Engineer (process engineering / thermal & nonthermal processing / HACCP validation / pilot-to-plant scale-up): Reasons from water activity, thermal microbiology, transport-coupled reaction, and rheology through heat- penetration studies, F0/D/z lethality integration, HACCP with prerequisite programs, and CFR Title 21 LACF/acidified-food rules while treating cold-point under-processing, aw and pH drift, post-process...

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Fpga Engineer · stanfish06 bundle
Expert-thinking profile for FPGA Engineer (RTL design / timing closure / CDC / SoC integration / lab bring-up (Vivado, Quartus)): Reasons from metastability budgets, setup/hold margins, and tool-reported WNS/TNS through Vivado/Quartus timing and CDC reports, XDC/SDC constraints, Spyglass/Verilator lint, and ILA/IBERT lab bring-up while treating unsafe clock-domain crossings, reset domain crossings, sim-versus- silicon X mismatches, and...

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Game Playtest · stanfish06 bundle
Run browser-game playtests and frontend QA. Use when the user asks for smoke tests, screenshot-based verification, browser automation, HUD or overlay review, or structured issue-finding in a browser game.

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Gerontologist · stanfish06 bundle
Expert-thinking profile for Gerontologist (clinical / research): Reasons from senescence hallmarks, frailty, multi-morbidity, and life-course exposures through validated instruments (Fried phenotype, Rockwood CFS, SPPB/gait speed), epigenetic clocks (Horvath, PhenoAge, GrimAge), competing-risk survival (Fine-Gray), and NIA cohorts (HRS, NHATS, ITP) while treating survivor bias...

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Green Chemist · stanfish06 bundle
Expert-thinking profile for Green Chemist (process R&D / pharmaceutical & fine- chemical manufacturing / sustainable design): Reasons from Anastas–Warner 12 principles, Trost atom economy, and PMI/MMI/E-factor mass metrics; selects solvents via CHEM21/GSK/ACS GCIPR guides, integrates catalysis and LCA (ISO 14040), and aligns REACH/CSS with ACS GC&E benchmarking.

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Gwas Pipeline · stanfish06 bundle
End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association testing. Produces Manhattan plots, QQ plots, clumped lead variants, and structured summary statistics.

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Herpetologist · stanfish06 bundle
Expert-thinking profile for Herpetologist (field / observational / lab / conservation herpetology): Reasons from detectability-limited sampling and ectotherm phenology through VES, pitfall/drift-fence and cover-board arrays, NAAMP call surveys, Program MARK CJS, unmarked/occuTTD occupancy, and Bd/Bsal MW113 qPCR biosecurity; uses AmphibiaWeb, Reptile Database, SSAR 9th ed./CNAH names, Amphibian Disease Portal...

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Check NPM · stanfish06 bundle
Audit a JavaScript/TypeScript repo's npm, yarn, or pnpm configuration for supply-chain hardening: tool version, lifecycle scripts, unsafe dependency protocols, and minimum release age ≥3 days. Use when the user invokes /check-npm or asks to audit package manager security, lifecycle scripts, git dependencies, ignore-scripts, min-release-age, allow-git, approvedGitRepositories, strictDepBuilds, or blockExoticSubdeps in a Grafana plugin or JS/TS project.

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Citations · stanfish06 bundle
Canonical rules and HTML/CSS contract for inline `[n]` citation references, end-of-document Citations blocks, and optional per-section citation recaps used across Moody's Agentic Solutions HTML report skills (earnings-brief, peer-analysis, issuer-brief, sector-brief, etc.). Parent skills must read BOTH this `SKILL.md` (rules, numbering, hyperlink behavior, source data shape) AND `assets/template.html` (canonical CSS block + literal HTML markup snippets) before emitting citations. The asset file is the single source of truth for the visual/markup implementation; this `SKILL.md` is the single source of truth for the authoring rules. Triggers when the user asks about citations, sources, references, footnotes, hyperlinking [n] markers, or the Sources/Citations block in any HTML report skill.

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Cloud K8S · stanfish06 bundle
Use for authorized cloud, container, and Kubernetes security assessment including metadata SSRF, IAM misconfig, container escape paths, and cluster RBAC review.

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Colabfold · stanfish06
Fast AlphaFold2/ColabFold protein structure prediction. Use when predicting monomer or multimer protein structures from FASTA, running colabfold_batch, interpreting pLDDT/PAE, or preparing predicted structures for docking, molecular dynamics, or publication figures.

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Ecologist · stanfish06 bundle
Expert-thinking profile for Ecologist (field / observational / community & spatial ecology): Reasons from Preston/Fisher SADs and Hutchinson fundamental vs realized niches; designs quadrat/transect and distance/occupancy surveys; filters GBIF issue flags and iNaturalist DQA; fits vegan/iNEXT/unmarked GLMMs with Moran's I and nlme/glmmTMB spatial correlation while treating pseudoreplication, effort bias, and...

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Figma Use · stanfish06 bundle
Load this skill before every `use_figma` tool call. Trigger whenever the user wants to perform a write action or a unique read action that requires JavaScript execution in the Figma file context — e.g. create/edit/delete nodes, set up variables or tokens, build components and variants, modify auto-layout or fills, bind variables to properties, or inspect file structure programmatically.

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Geistdocs · stanfish06 bundle
Expert guidance for Geistdocs, Vercel's documentation template built with Next.js and Fumadocs — MDX authoring, configuration, AI chat, i18n, feedback, deployment. Use when creating documentation sites, configuring geistdocs, writing MDX content, or setting up docs infrastructure.

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Geodesist · stanfish06 bundle
Expert-thinking profile for Geodesist (space geodesy / reference-frame realization (ITRF) / GNSS-InSAR-SLR-VLBI-DORIS / crustal deformation / gravity-field modeling): Reasons from coordinates as four-dimensional objects with epoch, velocity, and frame realization (ITRS vs. ITRF2020, WGS84) through GAMIT/GLOBK and Bernese PPP-AR, SBAS/PS-InSAR with GACOS atmospheric correction, IERS Conventions, and 14-parameter Helmert transforms while treating ITRF-realization switches...

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Geologist · stanfish06 bundle
Expert-thinking profile for Geologist (field / mapping / stratigraphy / petrography / structural geology): Reasons from Steno's principles and Walther's Law through Brunton strike/dip, measured sections, hand-lens rock ID (QAPF/Folk/Dunham), thin-section petrography (PPL/XPL, Michel-Lévy, point counting), FGDC/GeMS geologic maps, NGMDB/Geolex/Macrostrat, and stereonet structural analysis while treating weathering, float...

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Geomaster · stanfish06 bundle
Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific domains. Supports satellite imagery processing (Sentinel, Landsat, MODIS, SAR, hyperspectral), vector and raster data operations, spatial statistics, point cloud processing, network analysis, cloud-native workflows (STAC, COG, Planetary Computer), and 8 programming languages (Python, R, Julia, JavaScript, C++, Java, Go, Rust) with 500+ code examples. Use for remote sensing workflows, GIS analysis, spatial ML, Earth observation data processing, terrain analysis, hydrological modeling, marine spatial analysis, atmospheric science, and any geospatial computation task.

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Skills Hub · stanfish06
Browse and install community skills from the BioClaw Skills Hub. Use when a user's task is not covered by built-in skills, or when the user asks about available skills, advanced workflows, or specialized analysis pipelines. Triggers on "skills hub", "more skills", "install skill", "community skills", "find a skill for".

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Sqlalchemy · stanfish06
The standard Python SQL toolkit and ORM — 2.x style only. Covers declarative models with DeclarativeBase/Mapped/mapped_column, engine and session lifecycle, CRUD with select() and Session.scalars(), relationships and eager loading (selectinload vs joinedload), transactions, async engines, and Alembic migrations. Use when defining database models in Python, querying relational databases (PostgreSQL, SQLite, MySQL) from application code, wiring a database into FastAPI, fixing N+1 or DetachedInstanceError problems, or migrating legacy Query-API code to 2.x.

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Topologist · stanfish06 bundle
Expert-thinking profile for Topologist (proof-based / algebraic topology / low- dimensional & knot theory / TDA (persistent homology)): Reasons from continuity, compactness, connectedness, homotopy, and manifold structure through invariants and tools like π₁ via Seifert-van Kampen, cellular/simplicial homology with ∂²=0 and Smith-normal-form torsion, Mayer-Vietoris, and SnapPy/GUDHI computation, while treating lost-Hausdorffness in quotients, torsion...

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UI Toolkit · stanfish06 bundle
Use when using Zoom UI Toolkit.

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Validation · stanfish06 bundle
Use when Codex is already in the validation phase of a security scan or the user explicitly asks to determine whether one or more candidate security findings are valid. Do not use as the primary trigger for full PR, commit, branch, patch, or repository scans.

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Vercel CLI · stanfish06 bundle
Vercel CLI expert guidance. Use when deploying, managing environment variables, linking projects, viewing logs, managing domains, or interacting with the Vercel platform from the command line.

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Virologist · stanfish06 bundle
Expert-thinking profile for Virologist (wet-lab / clinical / viral genomics): Reasons from Baltimore groups, replication-cycle kinetics, and ICTV/MSL41 taxonomy; runs plaque/TCID50/PRNT, MIQE qPCR, ARTIC Illumina/Nanopore surveillance, antiviral TOA, VLP platforms, and BEI Resources while treating DI particles, subgenomic RNA, pseudovirus cytotoxicity, and IFN/MHC evasion as first-class failure...

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Windows Ad · stanfish06 bundle
Use for authorized Active Directory and Windows identity attacks including Kerberos, AD CS, BloodHound paths, NTLM relay, and domain privilege escalation research.

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Apk Reverse · stanfish06 bundle
在 CLI 环境下做 Android APK 逆向时使用。适用于 APK 解包、Java 反编译、smali 修改、重打包、Frida 动态 Hook，以及按需切换到 so/native 分析。优先使用本机已安装的 jadx、apktool、frida、adb、ida-reverse、radare2。

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Audiologist · stanfish06 bundle
Expert-thinking profile for Audiologist (clinical audiology / diagnostic audiometry / amplification & cochlear implants / vestibular / standards (ANSI S3.6, ISO 8253)): Reasons from auditory transduction, site-of-lesion localization, audibility, and noise dose-response through calibrated pure-tone/masking audiometry, immittance, OAE and ABR/ASSR, and real-ear verification against NAL-NL2/DSL targets while treating unmasked cross-hearing, collapsed ear canals, transducer...

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Binary Diff · stanfish06 bundle
跨版本符号迁移与二进制差分。当你有旧版本的符号/逆向结果，需要快速迁移到新版本时使用。适用场景：内核缺 PDB 用旧版符号推导、程序更新后批量迁移函数名、应用更新后快速定位新偏移。核心方法：用 LLM 做结构化差异比对，程序化输入输出，成本极低（200 函数 ~1 元）。触发关键词：符号迁移、bindiff、跨版本、PDB 缺失、函数偏移迁移、symbol migration、binary diff、版本对比。

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Scrna Seq Qc · stanfish06 bundle
Process, quality-control, annotate, and visualize single-cell or single-nucleus RNA-seq datasets across tissues and species. Use when Codex needs to build, adapt, or review a general scRNA-seq QC pipeline; choose dataset-appropriate cell-level filters from QC distributions; run required scDblFinder-based doublet and ambient-RNA filtering; annotate cells with matched references or marker-based fallbacks; or generate global and per-group UMAP visualizations for large scRNA-seq datasets.

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Seismologist · stanfish06 bundle
Expert-thinking profile for Seismologist (observational / computational / operational seismology): Reasons from elastic wave theory and Earth models through detection, HypoDD/iLoc location, moment tensors, ambient-noise and receiver-function imaging, PSHA/OpenQuake hazard, and NEIC-style operational products (ShakeMap, PAGER, EEW) with explicit artifact and magnitude-type discipline.

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Skillquarium · stanfish06
Search this vault's 2,100+ skills and manage them with the skillquarium CLI. Use when looking for a skill to do something, when native description matching returns nothing useful, when you need every skill covering a topic rather than the single best match, when searching skill text for an exact string, or when adding, toggling, rebuilding, or updating skills in ~/.agents.

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Statistician · stanfish06 bundle
Expert-thinking profile for Statistician (applied inference / experimental design / Bayesian-frequentist / causal & survey methods / SAP-driven consulting): Reasons from estimands, generative-model assumptions, and a budgeted Type I/II error tradeoff through analysis plans (SAP, ICH E9(R1) estimands), mixed models, multiple imputation under MCAR/MAR/MNAR, and Benjamini-Hochberg FDR while treating naive post-selection SEs, unadjusted multiplicity, ignored clustering in...

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Thick Client · stanfish06 bundle
Use for authorized security testing of desktop thick clients including local storage, update channels, IPC, traffic, and client-side trust boundaries.

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Threat Model · stanfish06 bundle
Use when Codex is already in the threat-modeling phase of a security scan, the user explicitly invokes $threat-model, or the user explicitly asks to create, update, or persist a repository threat model. Do not use as the primary trigger for full PR, commit, branch, patch, or repository scans.

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Toxicologist · stanfish06 bundle
Expert-thinking profile for Toxicologist (regulatory / pharmaceutical / industrial chemical safety): Reasons from dose–response, ADME/TK, MOA/AOP, and exposure context; separates hazard from risk; derives BMDL/DNEL/RfD PODs and interprets OECD/ICH batteries with vehicle, strain, S9, and histopath artifacts as first-class failure modes.

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Transformers · stanfish06 bundle
Hugging Face Transformers for loading Hub models, running pipeline inference, text generation, and Trainer fine-tuning on NLP, vision, audio, and multimodal tasks. Use when working with AutoModel, pipelines, tokenizers, or TrainingArguments—not for general ML outside the Transformers library.

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Veterinarian · stanfish06 bundle
Expert-thinking profile for Veterinarian (clinical / companion & production animal medicine / One Health): Reasons from species-specific physiology and pharmacology (Plumb's, AMDUCA, MDR1/PRiME), WSAVA 2024/AAHA/ISCAID 2025/CAPC guidelines, IDEXX/Cornell/eClinpath diagnostics, CMPS-SF/FGS pain and RECOVER 2024 CPR, and One Health zoonosis reporting while treating cat NSAID/acetaminophen toxicity, subclinical bacteriuria...

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Agroecologist · stanfish06 bundle
Expert-thinking profile for Agroecologist (field ecology / soil health / participatory on-farm trials / landscape GIS / agroecology transitions (FAO 10 Elements)): Reasons from socio-ecological farm systems, functional diversity, soil-biology-mediated fertility, and yield-service trade-offs through mother-baby and mixed-model trials, N/P/C mass balances, PLFA/amplicon and pollinator surveys, and NDVI/FRAGSTATS landscape analysis, while treating edge-effect and plot-size...

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AI Researcher · stanfish06 bundle
Expert-thinking profile for AI Researcher (empirical ML / experiment design / evaluation methodology / reproducibility / LLM & RL / trustworthiness (robustness, fairness, safety)): Reasons from data generating processes, inductive biases, and compute-data-algorithm trade-offs through train/val/test discipline, seed sweeps, ablation ladders, and standards like NeurIPS reproducibility checklists, model cards, and lm-eval-harness, while treating data leakage (Kapoor & Narayanan taxonomy), benchmark...

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AWS MCP Setup · stanfish06
Configure AWS MCP servers for documentation search and API access. Use when setting up AWS MCP, configuring AWS documentation tools, troubleshooting MCP connectivity, or when user mentions aws-mcp, awsdocs, uvx setup, or MCP server configuration. Covers both Full AWS MCP Server (with uvx + credentials) and lightweight Documentation MCP (no auth required).

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Wrangler · stanfish06 bundle
Cloudflare Workers CLI for deploying, developing, and managing Workers, KV, R2, D1, Vectorize, Hyperdrive, Workers AI, Containers, Queues, Workflows, Pipelines, and Secrets Store. Load before running wrangler commands to ensure correct syntax and best practices. Biases towards retrieval from Cloudflare docs over pre-trained knowledge.

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Anatomist · stanfish06 bundle
Expert-thinking profile for Anatomist (comparative morphology / museum collections / dissection & imaging): Reasons from homology, EPB, and von Baer principles through gross dissection, diceCT/μCT/MRI pipelines, UBERON–PATO EQ annotation, MorphoSource/oVert digitization, geometric morphometrics, and NAV/TA2 nomenclature while treating fixation shrinkage, segmentation artifacts, landmark homology error, and collection bias...

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Autoskill · stanfish06 bundle
Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use when the user asks to analyze their recent work and propose skills based on what they actually do. Requires the screenpipe daemon (https://github.com/screenpipe/screenpipe) running locally on port 3030 — the skill has no other data source and will refuse to run if screenpipe is unreachable. All detection runs locally; only redacted cluster summaries reach the LLM.

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Bio Tools · stanfish06 bundle
Biology research tools reference. Always available inside agent containers.

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Biopython · stanfish06 bundle
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.

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Rdkit · stanfish06 bundle
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

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Rowan · stanfish06
Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and tautomer ensembles, docking and analogue docking, protein-ligand cofolding, MSA generation, molecular dynamics, permeability, descriptor workflows, and related small-molecule or protein modeling tasks. Ideal for programmatic batch screening, multi-step chemistry pipelines, and workflows that would otherwise require maintaining local HPC/GPU infrastructure.

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Start · stanfish06 bundle
Use when starting Zoom work.

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1088 published skills · page 10 of 11